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Volumn 67, Issue 1, 2008, Pages 29-40

Comparative analysis of period genes in teleost fish genomes

Author keywords

Asymmetric evolutionary rates; Circadian clocks; Genome duplication; In situ hybridization; Purifying selection; Syntenic analysis

Indexed keywords

ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; EVOLUTIONARY RATE; GENE DUPLICATION; GENE EXPRESSION; GENOME ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PER1 GENE; PER1A GENE; PER1B GENE; PER2 GENE; PER2A GENE; PER2B GENE; PER3 GENE; PERIOD GENE; PHYLOGENY; PUFFER FISH; REGULATOR GENE; RNA SPLICING; TELEOST; ZEBRA FISH;

EID: 48549104380     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-008-9121-5     Document Type: Article
Times cited : (63)

References (78)
  • 1
    • 0345596433 scopus 로고    scopus 로고
    • A differential response of two putative mammalian circadian regulators, mper1 and mper2, to light
    • U Albrecht ZS Sun G Eichele CC Lee 1997 A differential response of two putative mammalian circadian regulators, mper1 and mper2, to light Cell 91 1055 1064
    • (1997) Cell , vol.91 , pp. 1055-1064
    • Albrecht, U.1    Sun, Z.S.2    Eichele, G.3    Lee, C.C.4
  • 4
    • 0021751123 scopus 로고
    • Restoration of circadian behavioural rhythms by gene transfer in Drosophila
    • TA Bargiello FR Jackson MW Young 1984 Restoration of circadian behavioural rhythms by gene transfer in Drosophila Nature 312 752 754
    • (1984) Nature , vol.312 , pp. 752-754
    • Bargiello, T.A.1    Jackson, F.R.2    Young, M.W.3
  • 6
    • 0030021710 scopus 로고    scopus 로고
    • Circadian regulation of melatonin production in cultured zebrafish pineal and retina
    • GM Cahill 1996 Circadian regulation of melatonin production in cultured zebrafish pineal and retina Brain Res 708 177 181
    • (1996) Brain Res , vol.708 , pp. 177-181
    • Cahill, G.M.1
  • 7
    • 0035991379 scopus 로고    scopus 로고
    • Clock mechanisms in zebrafish
    • GM Cahill 2002 Clock mechanisms in zebrafish Cell Tissue Res 309 27 34
    • (2002) Cell Tissue Res , vol.309 , pp. 27-34
    • Cahill, G.M.1
  • 8
    • 0032569599 scopus 로고    scopus 로고
    • Circadian rhythmicity in the locomotor activity of larval zebrafish
    • GM Cahill MW Hurd MM Batchelor 1998 Circadian rhythmicity in the locomotor activity of larval zebrafish Neuroreport 9 3445 3449
    • (1998) Neuroreport , vol.9 , pp. 3445-3449
    • Cahill, G.M.1    Hurd, M.W.2    Batchelor, M.M.3
  • 9
    • 0034636050 scopus 로고    scopus 로고
    • Asynchronous oscillations of two zebrafish CLOCK partners reveal differential clock control and function
    • N Cermakian D Whitmore NS Foulkes P Sassone-Corsi 2000 Asynchronous oscillations of two zebrafish CLOCK partners reveal differential clock control and function Proc Natl Acad Sci USA 97 4339 4344
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 4339-4344
    • Cermakian, N.1    Whitmore, D.2    Foulkes, N.S.3    Sassone-Corsi, P.4
  • 10
    • 2442707716 scopus 로고    scopus 로고
    • Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes
    • A Christoffels EG Koh JM Chia S Brenner S Aparicio B Venkatesh 2004 Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes Mol Biol Evol 21 1146 1151
    • (2004) Mol Biol Evol , vol.21 , pp. 1146-1151
    • Christoffels, A.1    Koh, E.G.2    Chia, J.M.3    Brenner, S.4    Aparicio, S.5    Venkatesh, B.6
  • 12
    • 33845638631 scopus 로고    scopus 로고
    • Studies of threespine stickleback developmental evolution: Progress and promise
    • WA Cresko KL McGuigan PC Phillips JH Postlethwait 2007 Studies of threespine stickleback developmental evolution: progress and promise Genetica 129 105 126
    • (2007) Genetica , vol.129 , pp. 105-126
    • Cresko, W.A.1    McGuigan, K.L.2    Phillips, P.C.3    Postlethwait, J.H.4
  • 13
    • 26444603772 scopus 로고    scopus 로고
    • Two rounds of whole genome duplication in the ancestral vertebrate
    • P Dehal JL Boore 2005 Two rounds of whole genome duplication in the ancestral vertebrate PLoS Biol 3 e314
    • (2005) PLoS Biol , vol.3 , pp. 314
    • Dehal, P.1    Boore, J.L.2
  • 14
  • 15
    • 0038618920 scopus 로고    scopus 로고
    • Differential regulation of Period 2 and Period 3 expression during development of the zebrafish circadian clock
    • F Delaunay C Thisse B Thisse V Laudet 2003 Differential regulation of Period 2 and Period 3 expression during development of the zebrafish circadian clock Gene Expr Patterns 3 319 324
    • (2003) Gene Expr Patterns , vol.3 , pp. 319-324
    • Delaunay, F.1    Thisse, C.2    Thisse, B.3    Laudet, V.4
  • 17
    • 0033593306 scopus 로고    scopus 로고
    • Molecular bases for circadian clocks
    • JC Dunlap 1999 Molecular bases for circadian clocks Cell 96 271 290
    • (1999) Cell , vol.96 , pp. 271-290
    • Dunlap, J.C.1
  • 19
    • 0037227485 scopus 로고    scopus 로고
    • The temporal distribution of gene duplication events in a set of highly conserved human gene families
    • R Friedman AL Hughes 2003 The temporal distribution of gene duplication events in a set of highly conserved human gene families Mol Biol Evol 20 154 161
    • (2003) Mol Biol Evol , vol.20 , pp. 154-161
    • Friedman, R.1    Hughes, A.L.2
  • 21
    • 24044444531 scopus 로고    scopus 로고
    • The circadian timekeeping system of Drosophila
    • PE Hardin 2005 The circadian timekeeping system of Drosophila Curr Biol 15 R714 R22
    • (2005) Curr Biol , vol.15
    • Hardin, P.E.1
  • 22
    • 15544389841 scopus 로고    scopus 로고
    • Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
    • X He J Zhang 2005 Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution Genetics 169 1157 1164
    • (2005) Genetics , vol.169 , pp. 1157-1164
    • He, X.1    Zhang, J.2
  • 24
    • 36248967647 scopus 로고    scopus 로고
    • Comparative phylogenomic analyses of teleost fish Hox gene clusters: Lessons from the cichlid fish Astatotilapia burtoni
    • S Hoegg JL Boore JV Kuehl A Meyer 2007 Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni BMC Genomics 8 317
    • (2007) BMC Genomics , vol.8 , pp. 317
    • Hoegg, S.1    Boore, J.L.2    Kuehl, J.V.3    Meyer, A.4
  • 25
  • 26
    • 0028342845 scopus 로고
    • The evolution of functionally novel proteins after gene duplication
    • AL Hughes 1994 The evolution of functionally novel proteins after gene duplication Proc Biol Sci 256 119 124
    • (1994) Proc Biol Sci , vol.256 , pp. 119-124
    • Hughes, A.L.1
  • 29
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
    • M Kellis BW Birren ES Lander 2004 Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae Nature 428 617 624
    • (2004) Nature , vol.428 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3
  • 30
    • 33749031807 scopus 로고    scopus 로고
    • Molecular components of the mammalian circadian clock
    • Spec No 2
    • CH Ko JS Takahashi 2006 Molecular components of the mammalian circadian clock Hum Mol Genet 15 Spec No 2 R271 R277
    • (2006) Hum Mol Genet , vol.15
    • Ko, C.H.1    Takahashi, J.S.2
  • 33
    • 0015119210 scopus 로고
    • Clock mutants of Drosophila melanogaster
    • RJ Konopka S Benzer 1971 Clock mutants of Drosophila melanogaster Proc Natl Acad Sci USA 68 2112 2116
    • (1971) Proc Natl Acad Sci USA , vol.68 , pp. 2112-2116
    • Konopka, R.J.1    Benzer, S.2
  • 34
    • 0027953771 scopus 로고
    • Hox genes in vertebrate development
    • R Krumlauf 1994 Hox genes in vertebrate development Cell 78 191 201
    • (1994) Cell , vol.78 , pp. 191-201
    • Krumlauf, R.1
  • 35
    • 13144276336 scopus 로고    scopus 로고
    • Gene duplication and complex circadian clocks in mammals
    • P Looby AS Loudon 2005 Gene duplication and complex circadian clocks in mammals Trends Genet 21 46 53
    • (2005) Trends Genet , vol.21 , pp. 46-53
    • Looby, P.1    Loudon, A.S.2
  • 36
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • M Lynch JS Conery 2000 The evolutionary fate and consequences of duplicate genes Science 290 1151 1155
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 37
    • 0032733930 scopus 로고    scopus 로고
    • Gene and genome duplications in vertebrates: The one-to-four (-to-eight in fish) rule and the evolution of novel gene functions
    • A Meyer M Schartl 1999 Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions Curr Opin Cell Biol 11 699 704
    • (1999) Curr Opin Cell Biol , vol.11 , pp. 699-704
    • Meyer, A.1    Schartl, M.2
  • 38
    • 26244444380 scopus 로고    scopus 로고
    • From 2R to 3R: Evidence for a fish-specific genome duplication (FSGD)
    • A Meyer Y Van de Peer 2005 From 2R to 3R: evidence for a fish-specific genome duplication (FSGD) Bioessays 27 937 945
    • (2005) Bioessays , vol.27 , pp. 937-945
    • Meyer, A.1    Van De Peer, Y.2
  • 42
    • 0037118077 scopus 로고    scopus 로고
    • Circadian rhythms from flies to human
    • S Panda JB Hogenesch SA Kay 2002 Circadian rhythms from flies to human Nature 417 329 335
    • (2002) Nature , vol.417 , pp. 329-335
    • Panda, S.1    Hogenesch, J.B.2    Kay, S.A.3
  • 43
    • 0036013776 scopus 로고    scopus 로고
    • Unraveling the mechanisms of the vertebrate circadian clock: Zebrafish may light the way
    • MP Pando P Sassone-Corsi 2002 Unraveling the mechanisms of the vertebrate circadian clock: zebrafish may light the way Bioessays 24 419 426
    • (2002) Bioessays , vol.24 , pp. 419-426
    • Pando, M.P.1    Sassone-Corsi, P.2
  • 44
    • 0035964343 scopus 로고    scopus 로고
    • A cell-based system that recapitulates the dynamic light-dependent regulation of the vertebrate clock
    • MP Pando AB Pinchak N Cermakian P Sassone-Corsi 2001 A cell-based system that recapitulates the dynamic light-dependent regulation of the vertebrate clock Proc Natl Acad Sci USA 98 10178 10183
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 10178-10183
    • Pando, M.P.1    Pinchak, A.B.2    Cermakian, N.3    Sassone-Corsi, P.4
  • 45
    • 24644486449 scopus 로고    scopus 로고
    • Timing and mechanism of ancient vertebrate genome duplications-the adventure of a hypothesis
    • G Panopoulou AJ Poustka 2005 Timing and mechanism of ancient vertebrate genome duplications-the adventure of a hypothesis Trends Genet 21 559 567
    • (2005) Trends Genet , vol.21 , pp. 559-567
    • Panopoulou, G.1    Poustka, A.J.2
  • 46
    • 34948908604 scopus 로고    scopus 로고
    • The zebrafish genome in context: Ohnologs gone missing
    • JH Postlethwait 2007 The zebrafish genome in context: ohnologs gone missing J Exp Zoolog B Mol Dev Evol 308 563 577
    • (2007) J Exp Zoolog B Mol Dev Evol , vol.308 , pp. 563-577
    • Postlethwait, J.H.1
  • 48
    • 4444340536 scopus 로고    scopus 로고
    • Subfunction partitioning, the teleost radiation and the annotation of the human genome
    • J Postlethwait A Amores W Cresko A Singer YL Yan 2004 Subfunction partitioning, the teleost radiation and the annotation of the human genome Trends Genet 20 481 490
    • (2004) Trends Genet , vol.20 , pp. 481-490
    • Postlethwait, J.1    Amores, A.2    Cresko, W.3    Singer, A.4    Yan, Y.L.5
  • 49
    • 0021680955 scopus 로고
    • Molecular analysis of the period locus in Drosophila melanogaster and identification of a transcript involved in biological rhythms
    • P Reddy WA Zehring DA Wheeler V Pirrotta C Hadfield JC Hall M Rosbash 1984 Molecular analysis of the period locus in Drosophila melanogaster and identification of a transcript involved in biological rhythms Cell 38 701 710
    • (1984) Cell , vol.38 , pp. 701-710
    • Reddy, P.1    Zehring, W.A.2    Wheeler, D.A.3    Pirrotta, V.4    Hadfield, C.5    Hall, J.C.6    Rosbash, M.7
  • 50
    • 33847065899 scopus 로고    scopus 로고
    • Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor
    • M Semon KH Wolfe 2007 Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor Trends Genet 23 108 112
    • (2007) Trends Genet , vol.23 , pp. 108-112
    • Semon, M.1    Wolfe, K.H.2
  • 51
    • 0031472474 scopus 로고    scopus 로고
    • Two period homologs: Circadian expression and photic regulation in the suprachiasmatic nuclei
    • LP Shearman MJ Zylka DR Weaver LF Kolakowski Jr. SM Reppert 1997 Two period homologs: circadian expression and photic regulation in the suprachiasmatic nuclei Neuron 19 1261 1269
    • (1997) Neuron , vol.19 , pp. 1261-1269
    • Shearman, L.P.1    Zylka, M.J.2    Weaver, D.R.3    Kolakowski Jr., L.F.4    Reppert, S.M.5
  • 52
    • 0029027342 scopus 로고
    • Hox gene expression in teleost fins and the origin of vertebrate digits
    • P Sordino F van der Hoeven D Duboule 1995 Hox gene expression in teleost fins and the origin of vertebrate digits Nature 375 678 681
    • (1995) Nature , vol.375 , pp. 678-681
    • Sordino, P.1    Van Der Hoeven, F.2    Duboule, D.3
  • 53
    • 33645230553 scopus 로고    scopus 로고
    • Many genes in fish have species-specific asymmetric rates of molecular evolution
    • D Steinke W Salzburger I Braasch A Meyer 2006 Many genes in fish have species-specific asymmetric rates of molecular evolution BMC Genomics 7 20
    • (2006) BMC Genomics , vol.7 , pp. 20
    • Steinke, D.1    Salzburger, W.2    Braasch, I.3    Meyer, A.4
  • 54
    • 0032770725 scopus 로고    scopus 로고
    • On the possibility of constructive neutral evolution
    • A Stoltzfus 1999 On the possibility of constructive neutral evolution J Mol Evol 49 169 181
    • (1999) J Mol Evol , vol.49 , pp. 169-181
    • Stoltzfus, A.1
  • 56
    • 0027453388 scopus 로고
    • Simple methods for testing the molecular evolutionary clock hypothesis
    • F Tajima 1993 Simple methods for testing the molecular evolutionary clock hypothesis Genetics 135 599 607
    • (1993) Genetics , vol.135 , pp. 599-607
    • Tajima, F.1
  • 57
    • 27844609293 scopus 로고    scopus 로고
    • Zebrafish circadian clocks: Cells that see light
    • TK Tamai AJ Carr D Whitmore 2005 Zebrafish circadian clocks: cells that see light Biochem Soc Trans 33 962 966
    • (2005) Biochem Soc Trans , vol.33 , pp. 962-966
    • Tamai, T.K.1    Carr, A.J.2    Whitmore, D.3
  • 58
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 60
    • 0035368224 scopus 로고    scopus 로고
    • Genome duplication, divergent resolution and speciation
    • JS Taylor Y Van de Peer A Meyer 2001 Genome duplication, divergent resolution and speciation Trends Genet 17 299 301
    • (2001) Trends Genet , vol.17 , pp. 299-301
    • Taylor, J.S.1    Van De Peer, Y.2    Meyer, A.3
  • 63
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 65
    • 0034819040 scopus 로고    scopus 로고
    • The ghost of selection past: Rates of evolution and functional divergence of anciently duplicated genes
    • Y Van de Peer JS Taylor I Braasch A Meyer 2001 The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes J Mol Evol 53 436 446
    • (2001) J Mol Evol , vol.53 , pp. 436-446
    • Van De Peer, Y.1    Taylor, J.S.2    Braasch, I.3    Meyer, A.4
  • 66
    • 1242274629 scopus 로고    scopus 로고
    • Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
    • K Van de poele W De Vos JS Taylor A Meyer Y Van de Peer 2004 Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates Proc Natl Acad Sci USA 101 1638 1643
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 1638-1643
    • Van De Poele, K.1    De Vos, W.2    Taylor, J.S.3    Meyer, A.4    Van De Peer, Y.5
  • 67
    • 33744907264 scopus 로고    scopus 로고
    • Evolutionary history of the vertebrate period genes
    • M von Schantz A Jenkins SN Archer 2006 Evolutionary history of the vertebrate period genes J Mol Evol 62 701 707
    • (2006) J Mol Evol , vol.62 , pp. 701-707
    • Von Schantz, M.1    Jenkins, A.2    Archer, S.N.3
  • 69
    • 33847662814 scopus 로고    scopus 로고
    • Comparison of Pax1/9 locus reveals 500-Myr-old syntenic block and evolutionary conserved noncoding regions
    • W Wang J Zhong B Su Y Zhou YQ Wang 2007 Comparison of Pax1/9 locus reveals 500-Myr-old syntenic block and evolutionary conserved noncoding regions Mol Biol Evol 24 784 791
    • (2007) Mol Biol Evol , vol.24 , pp. 784-791
    • Wang, W.1    Zhong, J.2    Su, B.3    Zhou, Y.4    Wang, Y.Q.5
  • 72
    • 0032234896 scopus 로고    scopus 로고
    • Zebrafish Clock rhythmic expression reveals independent peripheral circadian oscillators
    • D Whitmore NS Foulkes U Strahle P Sassone-Corsi 1998 Zebrafish Clock rhythmic expression reveals independent peripheral circadian oscillators Nat Neurosci 1 701 707
    • (1998) Nat Neurosci , vol.1 , pp. 701-707
    • Whitmore, D.1    Foulkes, N.S.2    Strahle, U.3    Sassone-Corsi, P.4
  • 74
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Z Yang 1997 PAML: a program package for phylogenetic analysis by maximum likelihood Comput Appl Biosci 13 555 556
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 75
    • 33845910903 scopus 로고    scopus 로고
    • Circadian oscillators of Drosophila and mammals
    • W Yu PE Hardin 2006 Circadian oscillators of Drosophila and mammals J Cell Sci 119 4793 4795
    • (2006) J Cell Sci , vol.119 , pp. 4793-4795
    • Yu, W.1    Hardin, P.E.2
  • 76
    • 34547816223 scopus 로고    scopus 로고
    • The role of Hox genes during vertebrate limb development
    • J Zakany D Duboule 2007 The role of Hox genes during vertebrate limb development Curr Opin Genet Dev 17 359 366
    • (2007) Curr Opin Genet Dev , vol.17 , pp. 359-366
    • Zakany, J.1    Duboule, D.2
  • 77
    • 33645233954 scopus 로고    scopus 로고
    • Circadian time-keeping during early stages of development
    • L Ziv Y Gothilf 2006 Circadian time-keeping during early stages of development Proc Natl Acad Sci USA 103 4146 4151
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 4146-4151
    • Ziv, L.1    Gothilf, Y.2
  • 78
    • 19044392845 scopus 로고    scopus 로고
    • Functional development of the zebrafish pineal gland: Light-induced expression of period2 is required for onset of the circadian clock
    • L Ziv S Levkovitz R Toyama J Falcon Y Gothilf 2005 Functional development of the zebrafish pineal gland: light-induced expression of period2 is required for onset of the circadian clock J Neuroendocrinol 17 314 320
    • (2005) J Neuroendocrinol , vol.17 , pp. 314-320
    • Ziv, L.1    Levkovitz, S.2    Toyama, R.3    Falcon, J.4    Gothilf, Y.5


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