-
2
-
-
0037266830
-
Functional evolution in the ancestral lineage of vertebrates or when genomic complexity was wagging its morphological tail
-
Aburomia R, Khaner O, Sidow A. 2003. Functional evolution in the ancestral lineage of vertebrates or when genomic complexity was wagging its morphological tail. J Struct Funct Genomics 3:45-52.
-
(2003)
J Struct Funct Genomics
, vol.3
, pp. 45-52
-
-
Aburomia, R.1
Khaner, O.2
Sidow, A.3
-
4
-
-
0031022113
-
Vertebrate evolution by interspecific hybridization - Are we polyploid?
-
Spring J. 1997. Vertebrate evolution by interspecific hybridization-are we polyploid? FEBS Lett 400:2-8.
-
(1997)
FEBS Lett
, vol.400
, pp. 2-8
-
-
Spring, J.1
-
5
-
-
0347799299
-
Phylogenetic analyses alone are insufficient to determine whether genome duplication(s) occurred during early vertebrate evolution
-
Horton AC, Mahadevan NR, Ruvinsky I, Gibson-Brown JJ. 2003. Phylogenetic analyses alone are insufficient to determine whether genome duplication(s) occurred during early vertebrate evolution. J Exp Zool 299B:41-53.
-
(2003)
J Exp Zool
, vol.299 B
, pp. 41-53
-
-
Horton, A.C.1
Mahadevan, N.R.2
Ruvinsky, I.3
Gibson-Brown, J.J.4
-
6
-
-
0037819447
-
Transcription regulation and animal diversity
-
Levine M, Tjian R. 2003. Transcription regulation and animal diversity. Nature 424:147-151.
-
(2003)
Nature
, vol.424
, pp. 147-151
-
-
Levine, M.1
Tjian, R.2
-
7
-
-
0030473920
-
Gen(om)e duplications in the evolution of early vertebrates
-
Sidow A. 1996. Gen(om)e duplications in the evolution of early vertebrates. Curr Opin Gen Dev 6:715-722.
-
(1996)
Curr Opin Gen Dev
, vol.6
, pp. 715-722
-
-
Sidow, A.1
-
8
-
-
0011354387
-
Conservation, duplication, and divergence of developmental genes during chordate evolution
-
Sharman AC, Holland PWH. 1996. Conservation, duplication, and divergence of developmental genes during chordate evolution. Neth J Zool 46:47-67.
-
(1996)
Neth J Zool
, vol.46
, pp. 47-67
-
-
Sharman, A.C.1
Holland, P.W.H.2
-
9
-
-
0031828161
-
Ancient large-scale genome duplications: Phylogenetic linkage analysis shed light on chordate genome evolution
-
Pebusque M-J, Coulieer F, Birnbaurm D, Pontarotti P. 1998. Ancient large-scale genome duplications: phylogenetic linkage analysis shed light on chordate genome evolution. Mol Biol Evol 15:1145-1159.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1145-1159
-
-
Pebusque, M.-J.1
Coulieer, F.2
Birnbaurm, D.3
Pontarotti, P.4
-
10
-
-
4444340536
-
Subfunction partitioning, the teleost radiation and the annotation of the human genome
-
Postlethwait P, Amores A, Cresco W, Singer A, Yan Y-L. 2004. Subfunction partitioning, the teleost radiation and the annotation of the human genome. Trends Genet 20:481-490.
-
(2004)
Trends Genet
, vol.20
, pp. 481-490
-
-
Postlethwait, P.1
Amores, A.2
Cresco, W.3
Singer, A.4
Yan, Y.-L.5
-
11
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch M, Conery JS. 2000. The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
12
-
-
0036578891
-
Evidence of en bloc duplication in vertebrate genomes
-
Abi-Rached L, Gilles A, Shiina T, Pontarotti P, Inoko H. 2002. Evidence of en bloc duplication in vertebrate genomes. Nat Genet 31:100-105.
-
(2002)
Nat Genet
, vol.31
, pp. 100-105
-
-
Abi-Rached, L.1
Gilles, A.2
Shiina, T.3
Pontarotti, P.4
Inoko, H.5
-
13
-
-
0037263482
-
Numerous groups of chromosomal regional paralogies strongly indicate two genome doublings at the root of the vertebrates
-
Lundin LG, Larhammer D, Hallböök F. 2003. Numerous groups of chromosomal regional paralogies strongly indicate two genome doublings at the root of the vertebrates. J Struct Funct Genomics 3:53-63.
-
(2003)
J Struct Funct Genomics
, vol.3
, pp. 53-63
-
-
Lundin, L.G.1
Larhammer, D.2
Hallböök, F.3
-
14
-
-
0032733930
-
Gene and genome duplications in verterbrates: The one-to-four (-to-eight in fish) rule and the evolution of novel gene functions
-
Meyer A, Schartl M. 1999. Gene and genome duplications in verterbrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Curr Op Cell Biol 11:699-704.
-
(1999)
Curr Op Cell Biol
, vol.11
, pp. 699-704
-
-
Meyer, A.1
Schartl, M.2
-
15
-
-
0036613237
-
Extensive genomic duplication during early chordate evolution
-
McLysaght A, Hokamp K, Wolfe KH. 2002. Extensive genomic duplication during early chordate evolution. Nat Genet 31:200-204.
-
(2002)
Nat Genet
, vol.31
, pp. 200-204
-
-
McLysaght, A.1
Hokamp, K.2
Wolfe, K.H.3
-
16
-
-
0036613509
-
Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution
-
Gu X, Wang Y, Gu J. 2002. Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. Nat Genet 31:205-209.
-
(2002)
Nat Genet
, vol.31
, pp. 205-209
-
-
Gu, X.1
Wang, Y.2
Gu, J.3
-
17
-
-
0038817812
-
New evidence for genome-wide duplications at the origin of vertebrates using an Amphioxus gene set and completed animal genomes
-
Panopoulou G, Hennig S, Groth D, Krause A, Poustka AJ, et al. 2003. New evidence for genome-wide duplications at the origin of vertebrates using an Amphioxus gene set and completed animal genomes. Genome Res 13:1056-1066.
-
(2003)
Genome Res
, vol.13
, pp. 1056-1066
-
-
Panopoulou, G.1
Hennig, S.2
Groth, D.3
Krause, A.4
Poustka, A.J.5
-
18
-
-
17144473540
-
Are we polyploids? A brief history of one hypothesis
-
Makalowski W. 2001. Are we polyploids? A brief history of one hypothesis. Genome Res 11:667-670.
-
(2001)
Genome Res
, vol.11
, pp. 667-670
-
-
Makalowski, W.1
-
19
-
-
0031795610
-
Eukaryote genome duplication - Where's the evidence?
-
Skrabanek L, Wolfe KH. 1998. Eukaryote genome duplication-where's the evidence? Curr Opin Gen Dev 8:694-700.
-
(1998)
Curr Opin Gen Dev
, vol.8
, pp. 694-700
-
-
Skrabanek, L.1
Wolfe, K.H.2
-
20
-
-
0037266536
-
Testing hypotheses of genome duplication in early vertebrates
-
Hughes AL, Friedman R. 2003. Testing hypotheses of genome duplication in early vertebrates. J Struct Funct Genomics 3:85-93.
-
(2003)
J Struct Funct Genomics
, vol.3
, pp. 85-93
-
-
Hughes, A.L.1
Friedman, R.2
-
22
-
-
0031989115
-
Genetic redundancy in vertebrates: Polyploidy and persistence of genes encoding multidomain proteins
-
Gibson TJ, Spring J. 1998. Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins. Trends Genet 14:46-49.
-
(1998)
Trends Genet
, vol.14
, pp. 46-49
-
-
Gibson, T.J.1
Spring, J.2
-
23
-
-
1242274629
-
Major events in the genome evolution of vertebrates: Paranome age and size differs considerably between ray-finned fishes and land vertebrates
-
Vandepoele K, De Vos W, Taylor JS, Meyer A, Van de Peer A. 2004. Major events in the genome evolution of vertebrates: Paranome age and size differs considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci USA 101:1638-1643.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1638-1643
-
-
Vandepoele, K.1
De Vos, W.2
Taylor, J.S.3
Meyer, A.4
Van De Peer, A.5
-
24
-
-
0034819040
-
Ghosts of selection past: Rates of evolution of anciently duplicated genes
-
Van de Peer Y, Taylor JS, Braasch I, Meyer A. 2001. Ghosts of selection past: rates of evolution of anciently duplicated genes. J Mol Evol 53:434-444.
-
(2001)
J Mol Evol
, vol.53
, pp. 434-444
-
-
Van De Peer, Y.1
Taylor, J.S.2
Braasch, I.3
Meyer, A.4
-
25
-
-
0035081235
-
Gene duplication and the structure of eukaryotic genomes
-
Friedman R, Hughes AL. 2001. Gene duplication and the structure of eukaryotic genomes. Genome Res 11:373-381.
-
(2001)
Genome Res
, vol.11
, pp. 373-381
-
-
Friedman, R.1
Hughes, A.L.2
-
26
-
-
0036141943
-
Testing the parsimony test of genome duplications: A counterexample
-
Gu X, Huang W. 2002. Testing the parsimony test of genome duplications: a counterexample. Genome Res 12:1-2.
-
(2002)
Genome Res
, vol.12
, pp. 1-2
-
-
Gu, X.1
Huang, W.2
-
28
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
Aparicio S, et al. 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297:1301-1310.
-
(2002)
Science
, vol.297
, pp. 1301-1310
-
-
Aparicio, S.1
-
29
-
-
7244259101
-
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
-
Jaillon O, et al. 2004. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 31:946-957.
-
(2004)
Nature
, vol.31
, pp. 946-957
-
-
Jaillon, O.1
-
31
-
-
0035968908
-
Comparative genomics provides evidence for an ancient genome duplication in fish
-
Taylor JS, Van de Peer Y, Braasch I, Meyer A. 2001. Comparative genomics provides evidence for an ancient genome duplication in fish. Phil Trans Roy Soc 356:1661-1679.
-
(2001)
Phil Trans Roy Soc
, vol.356
, pp. 1661-1679
-
-
Taylor, J.S.1
Van De Peer, Y.2
Braasch, I.3
Meyer, A.4
-
32
-
-
0037351989
-
Genome duplication, a trait shared by 22,000 species of ray-finned fish
-
Taylor JS, Braasch I, Frickey T, Meyer A, Van de Peer Y. 2003. Genome duplication, a trait shared by 22,000 species of ray-finned fish. Genome Res 13:382-390.
-
(2003)
Genome Res
, vol.13
, pp. 382-390
-
-
Taylor, J.S.1
Braasch, I.2
Frickey, T.3
Meyer, A.4
Van De Peer, Y.5
-
33
-
-
2442707716
-
Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes
-
Christoffels A, Koh EG, Brenner S, Aparicio S, Venkatesh B. 2004. Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. Mol Biol Evol 21:1146-1151.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1146-1151
-
-
Christoffels, A.1
Koh, E.G.2
Brenner, S.3
Aparicio, S.4
Venkatesh, B.5
-
34
-
-
3142552575
-
The duplication of the Hox gene clusters in teleost fishes
-
Prohaska SJ, Stadler PF. 2004. The duplication of the Hox gene clusters in teleost fishes. Theory in BioSciences 23:89-110.
-
(2004)
Theory in BioSciences
, vol.23
, pp. 89-110
-
-
Prohaska, S.J.1
Stadler, P.F.2
-
35
-
-
19944428079
-
Tetraodon genome confirms Takifugu findings: Most fish are ancient polyploids
-
Van de Peer Y. 2004. Tetraodon genome confirms Takifugu findings: most fish are ancient polyploids. Genome Biology 5:250.
-
(2004)
Genome Biology
, vol.5
, pp. 250
-
-
Van De Peer, Y.1
-
36
-
-
15544377813
-
Genome evolution and biodiversity in teleost fish
-
Volff J-N. 2005. Genome evolution and biodiversity in teleost fish. Heredity 94:280-294.
-
(2005)
Heredity
, vol.94
, pp. 280-294
-
-
Volff, J.-N.1
-
37
-
-
12244255369
-
Are genome evolution, organism complexity and species diversity linked?
-
Stellwag E. 2004. Are genome evolution, organism complexity and species diversity linked? Integr Comp Biol 44:358-365.
-
(2004)
Integr Comp Biol
, vol.44
, pp. 358-365
-
-
Stellwag, E.1
-
38
-
-
22144452139
-
Hox clusters as models for vertebrate genomic evolution
-
Hoegg S, Meyer A. 2005. Hox clusters as models for vertebrate genomic evolution. Trends Genet 21:421-424.
-
(2005)
Trends Genet
, vol.21
, pp. 421-424
-
-
Hoegg, S.1
Meyer, A.2
-
39
-
-
0029100727
-
Phylogenetic test of the molecular clock and linearized trees
-
Takezaki N, Rzhetsky A, Nei M. 1995. Phylogenetic test of the molecular clock and linearized trees. Mol Biol Evol 12:823-833.
-
(1995)
Mol Biol Evol
, vol.12
, pp. 823-833
-
-
Takezaki, N.1
Rzhetsky, A.2
Nei, M.3
-
40
-
-
8844271705
-
Recent developments in computational approaches for uncovering genomic homology
-
Simillion C, Vandepoele K, Van de Peer Y. 2004. Recent developments in computational approaches for uncovering genomic homology. BioEssays 26:1225-1235.
-
(2004)
BioEssays
, vol.26
, pp. 1225-1235
-
-
Simillion, C.1
Vandepoele, K.2
Van De Peer, Y.3
-
41
-
-
0842344613
-
Recent advances in the (molecular) phylogeny of vertebrates
-
Meyer A, Zardoya R. 2003. Recent advances in the (molecular) phylogeny of vertebrates. Ann Review Ecol Syst 34:311-338.
-
(2003)
Ann Review Ecol Syst
, vol.34
, pp. 311-338
-
-
Meyer, A.1
Zardoya, R.2
-
42
-
-
4143134848
-
Phylogenetic timing of the fish-specific genome duplication correlates with phenotypic and taxonomic diversification in fishes
-
Hoegg S, Brinkmann H, Taylor JS, Meyer A. 2004. Phylogenetic timing of the fish-specific genome duplication correlates with phenotypic and taxonomic diversification in fishes. J Mol Evol 59:190-203.
-
(2004)
J Mol Evol
, vol.59
, pp. 190-203
-
-
Hoegg, S.1
Brinkmann, H.2
Taylor, J.S.3
Meyer, A.4
-
44
-
-
4143095940
-
Novel evolutionary relationship among four fish model systems
-
Chen W-J, Guillermo Ortí G, Meyer A. 2004. Novel evolutionary relationship among four fish model systems. Trends Genet 20:424-431.
-
(2004)
Trends Genet
, vol.20
, pp. 424-431
-
-
Chen, W.-J.1
Guillermo Ortí, G.2
Meyer, A.3
-
46
-
-
0347135956
-
Developmental roles of pufferfish Hox clusters and genome evolution in ray-finned fish
-
Amores A, Suzuki T, yan Y-L, Pomery J, Singer A, et al. 2004. Developmental roles of pufferfish Hox clusters and genome evolution in ray-finned fish. Genome Res 14:1-10.
-
(2004)
Genome Res
, vol.14
, pp. 1-10
-
-
Amores, A.1
Suzuki, T.2
Yan, Y.-L.3
Pomery, J.4
Singer, A.5
-
47
-
-
9144273767
-
Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution
-
Chui C, Dewar K, Wagner GP, Takahashi K, Ruddle F, et al. 2004. Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution. Genome Res 14:11-17.
-
(2004)
Genome Res
, vol.14
, pp. 11-17
-
-
Chui, C.1
Dewar, K.2
Wagner, G.P.3
Takahashi, K.4
Ruddle, F.5
-
48
-
-
4444338618
-
Evolutionary plasticity of vertebrate Hox genes
-
Powers TP, Amemiya CT. 2004. Evolutionary plasticity of vertebrate Hox genes. Curr Genomics 5:459-472.
-
(2004)
Curr Genomics
, vol.5
, pp. 459-472
-
-
Powers, T.P.1
Amemiya, C.T.2
-
49
-
-
0027510821
-
An overview of the early fossil record of acanthomorphs
-
Patterson C. 1993. An overview of the early fossil record of acanthomorphs. Bull Mar Sci 52:29-59.
-
(1993)
Bull Mar Sci
, vol.52
, pp. 29-59
-
-
Patterson, C.1
|