A detailed linkage map of Medaka, Oryzias latipes: Comparative genomics and genome evolution

Genetics

Volumn 154, Issue 4, 2000, Pages 1773-1784

  Naruse, Kiyoshi ^a   Fukamachi, Shoji ^a   Mitani, Hiroshi ^a   Kondo, Mariko ^a   Matsuoka, Tomoko ^a   Kondo, Shu ^a   Hanamura, Nana ^a   Morita, Yutaka ^a   Hasegawa, Kazuhito ^a   Nishigaki, Reiko ^a   Shimada, Atsuko ^a   Wada, Hironori ^b   Kusakabe, Takehiro ^c   Suzuki, Norio ^c   Kinoshita, Masato ^d   Kanamori, Akira ^e   Terado, Tokio ^f   Kimura, Hiroshi ^f   Nonaka, Masaru ^a   Shima, Akihiro ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b RIKEN   (Japan)

^c HOKKAIDO UNIVERSITY   (Japan)

^d KYOTO UNIVERSITY   (Japan)

^e FISHERIES RESEARCH AGENCY   (Japan)

^f SHIGA UNIVERSITY OF MEDICAL SCIENCE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; FISH; GENE LOCUS; GENE MAPPING; GENETIC LINKAGE; GENOME; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TELEOST; X CHROMOSOME; Y CHROMOSOME;

ANIMALS; BASE SEQUENCE; CELL LINE; CHROMOSOME MAPPING; DNA PRIMERS; EVOLUTION; GENES, HOMEOBOX; GENOME; LINKAGE (GENETICS); MAJOR HISTOCOMPATIBILITY COMPLEX; ORYZIAS; SEX CHROMOSOMES;

BELONIFORMES; DANIO RERIO; LATIPES; ORYZIAS LATIPES; TELEOSTEI;

EID: 0034093094     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (43)

1. AIDA, T., 1921 On the inheritance of color in a fresh-water fish Aplocheilus latipes Temmick and Schlegel, with special reference to sex-linked inheritance. Genetics 6: 554-573.
2. AMORES, A., A. FORCE, Y. YAN, L. JOLY, C. AMEMIYA et al., 1998 Zebrafish hox clusters and vertebrate genome evolution. Science 282: 1711-1714.
3. APARICIO, S., K. HAWKER, A. COTTAG, Y. MIKAWA, L. ZUO et al., 1997 Organization of the Fugu rubripes Hox clusters: evidence for continuing evolution of vertebrate Hox complexes. Nat. Genet. 16: 79-83.
4. BINGULAC-POPOVIC, J., F. FIGUEROA, A. SATO, W. S. TALBOT, S. L. JOHNSON et al., 1997 Mapping of mhc class I and class II regions to different linkage groups in the zebrafish, Danio rerio. Immunogenetics 46: 129-134.
5. DAVIS, B., 1964 Disc gel electrophoresis. II. Method and application to human serum proteins. Ann. NY Acad. Sci. 121: 404-427.
6. DIB, C., S. FAURE, C. FIZAMES, D. SAMON, N. DROUOT et al., 1997 A comprehensive genetic map of the human genome based on 5264 microsatellites. Nature 380: 152-154.
7. DIETRICH, W. F., J. MILLER, R. STEEN, M. A. MERCHANT, D. DAMRON BOLES et al., 1997 A comprehensive genetic map of the mouse genome. Nature 380: 149-151.
8. HANSEN, J. D., P. STRASSBURGER, G. H. THORGAARD, W. P. YOUNG and L. DU PASQUIER, 1999 Expression, linkage and polymorphism of Mhc-related genes in rainbow trout, Oncorhynchus mykiss. J. Immunol. 163: 774-786.
9. HYODO-TAGUCHI, Y., and M. SAKAIZUMI, 1993 List of inbred strains of the medaka Oryzias latipes, maintained in the division of Biology, National Institute of Radiological Sciences. Fish Biol. J. Medaka 5: 5-10.
10. JOHNSON, S. L., M. A. GATES, M. JOHNSON, W. S. TALBOT, S. HORNE et al., 1996 Centromere-linkage analysis and consolidation of the zebrafish genetic map. Genetics 142: 1277-1288.
11. KNAPIK, K. W., A. GOODMAN, M. EKKER, M. CHEVRETTE, J. DELGADO et al., 1998 A microsatellite genetic linkage map for zebrafish (Danio rerio). Nat. Genet. 18: 338-343.
12. KOMURA, J., H. MITANI and A. SHIMA, 1988 Fish cell culture: establishment of two fibroblast-like cell lines (OL-17 and OL-32) from fin of the Medaka, Oryzias latipes. In Vitro 24: 294-298.
13. KUBOTA, Y., A. SHIMADA and A. SHIMA, 1995 DNA alternations detected in the progeny of paternally irradiated Japanese medaka fish (Oryzias latipes). Proc. Natl. Acad. Sci. USA 92: 330-334.
14. KURODA, N., H. WADA, K. NARUSE, A. SHIMADA, A. SHIMA et al., 1996 Molecular cloning and linkage analysis of the Japanese medaka fish complement Bf/C2 gene. Immunogenetics 44: 459-467.
15. KURODA, N., K. NARUSE, A. SHIMA, M. NONAKA, M. SASAKI et al., 2000 Molecular cloning and linkage analysis of complement C3 and C4 genes of the Japanese medaka fish. Immunogenetics 51: 117-128.
16. LANDER, E. S., and D. BOTSTEIN, 1989 Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
17. LANDER, E. S., P. GREEN, J. ABRAHAMSON, A. BARLOW, M. J. DALY et al., 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
18. MATSUDA, M., T. KUSAMA, T. OSHIRO, Y. KURIHARA, S. HAMAGUCHI et al., 1997a Isolation of a sex chromosome-specific DNA sequence in the medaka Oryzias latipes. Genes Genet. Syst. 72: 263-268.
19. MATSUDA, M., H. YONEKAWA, S. HAMAGUCHI and M. SAKAIZUMI, 1997b Geographic variation and diversity in the mitochondrial DNA of the medaka Oryzias latipes, as determined by restriction endonuclease analysis. Zool. Sci. 14: 517-526.
20. MATSUDA, M., C. MATSUDA, S. HAMAGUCHI and M. SAKAIZUMI, 1998 Identification of the sex chromosomes of the medaka, Oryzias latipes, by fluorescence in situ hybridization. Cytogenet. Cell Genet. 82: 257-262.
21. MCCARTHY, L., K. HUNTER, L. SCHALKWYK, L. RIBA, S. ANSON et al., 1995 Efficient high-resolution genetic mapping of mouse interspersed repetitive sequence PCR products, toward integrated genetic and physical mapping of the mouse genome. Proc. Natl. Acad. Sci. USA 92: 5302-5306.
22. NAMIKAWA-YAMADA, C., K. NARUSE, H. WADA, A. SHIMA, N. KURODA et al., 1997 Genetic linkage between the LMP2 and LMP7 genes in the medaka fish, a teleost. Immunogenetics 46: 431-433.
23. NARUSE, K., 1996 Classification and phytogeny of fishes of the genus Oryzias and its relatives. Fish Biol. J. Medaka 8: 1-9.
24. NARUSE, K., and A. SHIMA, 1989 Linkage relationships of gene loci in the medaka, Oryzias latipes (Pisces: Oryziatidae), determined by backcrosses and gynogenesis. Biochem. Genet. 27: 183-198.
25. NARUSE, K., A. SHIMADA and A. SHIMA, 1988 Gene-centromere mapping for 5 visible mutant loci in multiple recessive tester stock of the medaka (Oryzias latipes). Zool. Sci. 5: 489-492.
26. NARUSE, K., H. MITANI and A. SHIMA, 1992 A highly repetitive interspersed sequence isolated from genomic DNA of the Medaka, Oryzias latipes, is conserved in three other related species within the genus Oryzias. J. Exp. Zool. 262: 81-86.
27. NARUSE, K., M. SAKAIZUMI and A. SHIMA, 1994 Medaka as an experimental animal for biological study. Fish Biol. J. Medaka 6: 47-52.
28. NELSON, J. S., 1994 Fishes of the World. John Wiley & Sons, New York.
29. POSTLETHWAIT, J. H., S. L. JOHNSON, C. N. MIDSON, W. S. TALBOT, M. GATES et al., 1994 A genetic linkage map for zebrafish. Science 264: 699-703.
30. POSTLETHWAIT, J. H., Y. L. YAN, M. A. GATES, S. HORNE, A. AMORES et al., 1998 Vertebrate genome evolution and the zebrafish gene map. Nat. Genet. 18: 301-303.
31. SAKAIZUMI, M., 1986 Genetic divergence in wild population of the fish Oryzias latipes (Pisces: Oryziatidae) from Japan and China. Genetica 69: 119-125.
32. SCOTT, M. P., 1992 Vertebrate homeobox gene nomenclature. Cell 71: 551-553.
33. SHIMADA, A., and A. SHIMA, 1997 Combination of genomic DNA fingerprinting into the medaka specific-locus test system for studying environmental germ-line mutagenesis. Mutat. Res. 399: 149-165.
34. SHIMODA, N., M. CHEVRETTE, M. EKKER, Y. KIKUCHI, Y. HOTTA et al., 1996 Mermaid: a family of short interspersed repetitive elements widespread in vertebrates. Biochem. Biophys. Res. Commun. 220: 226-232.
35. SUN, H., R. KONDO, A. SHIMA, K. NARUSE, H. HORI et al., 1999 Evolutionary analysis of putative olfactory receptor genes of medaka fish, Oryzias latipes. Gene 231: 137-145.
36. TOMITA, H., 1975 Mutant gene in the Medaka, pp. 251-272 in Medaka (killifish) Biology and Strains, edited by T. YAMAMOTO. Keigaku, Tokyo.
37. TOMITA, H., 1982 Gene analysis in the Medaka (Oryzias latipes). Fish Biol. J. Medaka 1: 7-10.
38. UCHIYAMA, T., I. HIRONO, M. OHTA, F. TAKASHIMA and T. AOKI, 1996 A highly repetitive sequence isolated from genomic DNA of the medaka (Oryzias latipes). Mol. Marine Biol. Biotech. 5: 220-224.
39. VOS, P., R. HOGERS, M. BLEEKER, M. REIJANS, T. VAN DER LEE, M. HORNES et al., 1995 AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.
40. WADA, H., K. NARUSE, A. SHIMADA and A. SHIMA, 1995 Genetic linkage map of a fish, the Japanese medaka Oryzias latipes. Mol. Marine Biol. Biotech. 4: 269-274.
41. WADA, H., A. SHIMADA, S. FUKAMACHI, K. NARUSE and A. SHIMA, 1998 Sex-linked inheritance of the lf locus in the medaka fish (Oryzias latipes). Zool. Sci. 15: 123-126.
42. YAMAMOTO, T., 1975 Medaka (killifish) Biology and Strains. Keigaku, Tokyo.
43. YOUNG, W. P., P. A. WHEELER, V. H. CORYELL, P. KEIM and G. H. THORGAARD, 1998 A detailed linkage map of rainbow trout produced using doubled haploids. Genetics 148: 839-850.