Gene and genome duplications in vertebrates: The one-to-four (-to-eight in fish) rule and the evolution of novel gene functions

Current Opinion in Cell Biology

Volumn 11, Issue 6, 1999, Pages 699-704

  Meyer, Axel ^a   Schartl, Manfred ^b  

^a UNIVERSITY OF KONSTANZ   (Germany)

^b UNIVERSITY OF WÜRZBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMPHIBIA; ANIMAL CELL; BIRD; FISH; GENE DUPLICATION; GENE FUNCTION; GENOME; MAMMAL; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PSEUDOGENE; REPTILE; REVIEW; VERTEBRATE;

ACTINOPTERYGII; AMPHIBIA; ANIMALIA; AVES; ENTOVALVA; LATIMERIA CHALUMNAE; MAMMALIA; REPTILIA; VERTEBRATA;

EID: 0032733930     PISSN: 09550674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0955-0674(99)00039-3     Document Type: Review

References (45)

1. Ohno S. Evolution by Gene Duplication. 1970;Springer Verlag, New York.
2. Sidow A. Gen(om)e duplications in the evolution of early vertebrates. Curr Opin Genet Dev. 6:1996;715-722.
3. Holland P.W.H., Garcia-Fernandez J.D. Hox genes and chordate evolution. Dev Biol. 173:1996;382-395.
4. Sharman A.C., Holland P.W.H. Conservation, duplication, and divergence of developmental genes during chordate evolution. Neth J Zool. 46:1996;47-67.
5. Spring J. Vertebrate evolution by interspecific hybridization - are we polyploid? FEBS Lett. 400:1997;2-8.
6. Ohno S. The one-to-four rule and paralogues of sex-determing gene. Cell Mol Life Sci. 55:1999;824-830.
7. Holland P.W.H. Vertebrate evolution: something fishy about Hox genes. Curr Biol. 7:1997;570-572.
8. Pebusque M.J., Coulier F., Birnbaurm D., Pontarotti P. Ancient large-scale genome duplications: phylogenetic linkage analyses shed light on chordate genome evolution. Mol Biol Evol. 15:1998;1145-1159.
9. Skrabanek L., Wolfe K.H. Eukaryote genome duplication - where's the evidence? Curr Opin Genet Dev. 8:1998;694-700.
10. Hughes A.L. Phylogenetic tests of the hypothesis of block duplication of homologous genes on human chromosomes 6, 9, and 1. Mol Biol Evol. 15:1998;854-870.
11. Smith N.G.C., Knight R., Hurst L.D. Vertebrate genome evolution: a slow shuffle or a big bang? BioEssays. 21:1999;697-703.
12. Meyer A. The evolution of body plans: HOM/Hox cluster evolution, model systems and the importance of phylogeny. Harvey P.H., Leigh Brown A.J., Maynard Smith J., Nee S. New Uses for New Phylogenies. 1996;322-340 Oxford University Press.
13. Bailey W.J., Kim J., Wagner G.P., Ruddle F.H. Phylogenetic reconstruction of vertebrate Hox cluster duplications. Mol Biol Evol. 14:1997;843-853.
14. Prince V.E., Joly L., Ekker M., Ho R.K. Zebrafish Hox genes: genomic organisation and modified colinear expression patterns in the trunk. Development. 125:1998;407-420.
15. Amores A., Force A., Yan Y.-L., Joly L., Amemiya C., Fritz A., Ho R.K., Langeland J., Prince V., Wang Y.-L., Westerfield M.et al. Zebrafish Hox clusters and vertebrate genome evolution. Science. 282:1998;711-714. This study demonstrates the existences of at least seven Hox gene clusters in the zebrafish and reconstructs an evolutionary scenario for the evolution of Hox gene clusters in vertebrates.
16. Longhurst T.J., Joss J.M.P. Homeobox genes in the Australian lungfish, Neocerodus forsteri. Mol Dev Evol. 285:1999;140-145.
17. Wittbrodt J., Meyer A., Schartl M. More genes in fish? Bioessays. 20:1998;511-515.
18. Meyer A., Málaga-Trillo E. Vertebrate genomics: more fishy tales about Hox genes. Curr Biol. 9:1999;R210-R213.
19. Barth A.L., Justice N.J., Ngai J. Asynchromous onset of odorant receptor expression in the developing zebrafish olfactory system. Neuron. 16:1996;23-34.
20. Weth F., Nadler W., Korsching S. Nested expression for odorant receptors in zebrafish olfactory epithelium. Proc Natl Acad Sci U.S.A. 3:1996;13321-13326.
21. Frönzler D., Altschmied J., Nanda I., Kollo R., Baudler M., Schmid M., Schartl M. The Xmrk oncogene promoter is derived from a novel amplified locus of unusual organiszation. Genome Res. 6:1996;102-113.
22. Adam D., Dimitrijevic Schartl M. Tumor suppression in Xiphophorus by an accidentall acquired promoter. Science. 259:1993;816-819.
23. Gates M.A., Kim L., Egan E.S., Cardozo T., Sirotkin H.I., Dougan S.T., Lashkari D., Abagyan R., Schier A.F., Talbot W.S. A genetic linkage map for zebrafish: Comparative analysis and localization of genes and expressed sequences. Genome Res. 9:1999;334-347.
24. Nei M. Gene duplication and nucleotide substitution in evolution. Nature. 221:1969;40-42.
25. Li W.-H. Rate of gene silencing at duplicate loci: a theoretical study and interpretation of data from tetraploid fishes. Genetics. 95:1980;722-731.
26. Wagner A. The fate of duplicated genes: loss or new function? Bioessays. 20:1998;785-788.
27. Force A.m., Lynsch M., Picketrt F.B., Amores A., Yan Y.-L., Postleweith J. Preservation of duplicate genes by complementary, degenerative muations. Genetics. 151:1999;1531-1545. This paper presents an innovative model of diversification of gene function after duplication.
28. Allendorf F.W., Utter F.M., May B.P. Gene duplication within the family Salmonidae. II. Detection and determination of the genetic control of duplicate loci through inheritance studies and the examination of populations. Market C.L. Isozymes Genetics and Evolution. 1975;415-432 Academic Press, New York.
29. Bailey G.S., Poulter R.T.M., Stockwell P.A. Gene duplication in tetraploid fish: a model for silencing at unlinked duplicated loci. Proc Natl Acad Sci USA. 75:1978;5575-5579.
30. Ferris S.D., Whitt G.S. Evolution of differential regulation of duplicate genes after polyploidization. J Mol Evol. 12:1979;267-317.
31. Hughes M.K., Hughes A.L. Evolution of duplicate genes in a tetraploid animal, Xenopus laevis. Mol Biol Evol. 10:1993;1360-1369.
32. Wang Y., Gu X. Dating the two-round genome duplications in early vertebrates. Trends Genet. 1999;. in press.
33. Treisman J.E. A conserved blueprint for the eye? Bioessays. 21:1999;843-850.
34. Meyer A. Homology and homoplasy: the retention of genetic programmes. Hock G. Homology. 1999;141-157 Wiley & Son, Chichester.
35. Jacob F. Evolution and tinkering. Science. 196:1977;1161-1166.
36. Wilkens A.S. Canalization: a molecular genetic perspective. Bioessays. 19:1997;257-262.
37. Cooke J., Nowak M.A., Boerlijst M., Maynard-Smith J. Evolutionary origins and maintenance of redundant gene expression during metazoan development. Trends Genet. 13:1997;360-364.
38. Davidson E.H. Gene Activity in Early Development. edn 3:1986;Academic Press, Orlando Florida.
39. Davidson E.H., Ruckun G. Themes from a NASA workshop on gene regulatory processes in development and evolution. J Exp Zool. 285:1999;104-115.
40. Palopoli M.F., Patel N.H. Neo-Darwinian developmental evolution: can we bridge the gap between pattern and process? Curr Opin Genet Dev. 6:1996;502-508.
41. Hammerschmid M. The world according to hedgehog. Trends Genetics. 13:1997;14-21.
42. Shimeld S.M. The evolution of the hedgehog gene family in chordates: insights from amphioxus hedgehog. Dev Genes Evol. 209:1999;40-47. In this paper the author reconstructs the evolution of hh genes in chordates. The diversification of functions in paralogous copies of hedgehog genes that arose through gene and genome duplication during the evolution of chordates is described.
43. Zardoya R., Abeiheif E., Meyer A. Evolutionary analyses of hedgehog and Hoxd-10 genes in fish species closely related to the zebrafish. Proc Natl Acad Sci USA. 93:1996;13036-13041.
44. Zardoya R., Abeiheif E., Meyer A. Evolution and orthology of hedgehog genes. Trends in Genet. 12:1996;496-497.
45. Ruddle F.H. Vertebrate genome evolution - a decade ahead. Genomics. 46:1997;171-173.