Energy-based prediction of amino acid-nucleotide base recognition

Journal of Computational Chemistry

Volumn 29, Issue 12, 2008, Pages 1955-1969

  Marabotti, Anna ^a,b   Spyrakis, Francesca ^c,d   Facchiano, Angelo ^a,b   Cozzini, Pietro ^c,d   Alberti, Saverio ^e   Kellogg, Glen E ^f   Mozzarelli, Andrea ^c,d  

^a CNR   (Italy)

^b SECOND UNIVERSITY OF NAPLES   (Italy)

^c UNIVERSITY OF PARMA   (Italy)

^d NATIONAL INSTITUTE OF BIOSTRUCTURES AND BIOSYSTEMS   (Italy)

^e UNIVERSITY OF CHIETI   (Italy)

^f VIRGINIA COMMONWEALTH UNIVERSITY   (United States)

Author keywords

Amino acid base recognition; Energy based code; HINT; Protein DNA; Zinc finger

Indexed keywords

ACID BASE; CASE STUDIES; DATA SETS; DNA STRUCTURES; ENERGETIC RELEVANCE; ENHANCEMENT FACTORS; ENTROPIC CONTRIBUTIONS; FORCE FIELD (FF); HIGH RESOLUTIONS; HYDROGEN BOND INTERACTIONS; INTERACTION ENERGIES; NON NEWTONIAN; NUCLEOTIDE BASES; PREDICTION RATE; PREFERENTIAL INTERACTION; ZINC FINGERS;

ACIDS; AMINATION; AMINES; AMINO ACIDS; FLOW INTERACTIONS; FORECASTING; HEALTH; HYDROGEN; HYDROGEN BONDS; KETONES; LAWS AND LEGISLATION; NONMETALS; NUCLEIC ACIDS; NUCLEOTIDES; RISK ASSESSMENT; WATER ANALYSIS; ZINC; ZINC SULFIDE;

ORGANIC ACIDS;

AMINO ACID; DNA; NUCLEOTIDE; PROTEIN; WATER;

ARTICLE; BINDING SITE; BIOLOGY; CHEMISTRY; HYDROGEN BOND; METHODOLOGY; PROTEIN BINDING; THERMODYNAMICS;

AMINO ACIDS; BINDING SITES; COMPUTATIONAL BIOLOGY; DNA; HYDROGEN BONDING; NUCLEOTIDES; PROTEIN BINDING; PROTEINS; THERMODYNAMICS; WATER;

EID: 47549102750     PISSN: 01928651     EISSN: 1096987X     Source Type: Journal    
DOI: 10.1002/jcc.20954     Document Type: Article

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