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Volumn 47, Issue 6, 2004, Pages 1360-1374

A Computational Model for Anthracycline Binding to DNA: Tuning Groove-Binding Intercalators for Specific Sequences

Author keywords

[No Author keywords available]

Indexed keywords

2' BROMO 4' EPIDAUNORUBICIN; 2' CHLORO 4' EPIDAUNORUBICIN; 2' FLUORO 4' EPIDAUNORUBICIN; 2' IODO 4' EPIDAUNORUBICIN; 3' (3 CYANOMORPHOLINO) 3' DEAMINODOXORUBICIN; 4' IODOESORUBICIN; 9 DEHYDROXYDOXORUBICIN; ADRIAMYCINONE; ANNAMYCIN; ANTHRACYCLINE ANTIBIOTIC AGENT; BROMODOXORUBICIN; CARBOXYDAUNORUBICIN GAMMA LACTAM; CHLORODOXORUBICIN; DAUNOMYCINONE; DAUNORUBICIN; DAUNOSAMINE; DOXORUBICIN 3',4' DIACETATE; DOXORUBICIN DERIVATIVE; FLUORODOXORUBICIN; HYDROXYDOXORUBICIN; IDARUBICIN; N (BROMOACETYL)DOXORUBICIN; N (CHLOROACETYL)DOXORUBICIN; N (FLUOROACETYL)DOXORUBICIN; N (IODOACETYL)DOXORUBICIN; PIRARUBICIN; TRIFLUOROACETAMIDE; UNCLASSIFIED DRUG; UNINDEXED DRUG; WP 608; ZORUBICIN;

EID: 1542358019     PISSN: 00222623     EISSN: None     Source Type: Journal    
DOI: 10.1021/jm030529h     Document Type: Article
Times cited : (50)

References (47)
  • 1
    • 0038497542 scopus 로고
    • Molecular Structure of Nucleic Acids
    • Watson, J. D.; Crick, F. H. C. Molecular Structure of Nucleic Acids. Nature 1953, 171, 737-738.
    • (1953) Nature , vol.171 , pp. 737-738
    • Watson, J.D.1    Crick, F.H.C.2
  • 2
    • 0033806243 scopus 로고    scopus 로고
    • Intercalative Binding of Small Molecules to Nucleic Acids
    • Graves, D. E.; Velea, L. M. Intercalative Binding of Small Molecules to Nucleic Acids. Curr. Org. Chem. 2000, 4 (9), 915-929.
    • (2000) Curr. Org. Chem. , vol.4 , Issue.9 , pp. 915-929
    • Graves, D.E.1    Velea, L.M.2
  • 3
    • 0001322933 scopus 로고    scopus 로고
    • A Physical Map of the Human Genome
    • The International Human Genome Mapping Consortium. A Physical Map of the Human Genome. Nature 2001, 401, 860-921.
    • (2001) Nature , vol.401 , pp. 860-921
  • 4
    • 0026714331 scopus 로고
    • The Anthracyclines: Will We Ever Find a Better Doxorubicin?
    • Weiss, Raymond B. The Anthracyclines: Will We Ever Find a Better Doxorubicin? 1992, Semin. Oncol. 19 (6), 670-686.
    • (1992) Semin. Oncol. , vol.19 , Issue.6 , pp. 670-686
    • Weiss, R.B.1
  • 5
    • 0015494420 scopus 로고
    • Stereochemistry of Intercalation: Interaction of Daunomycin with DNA
    • Pigram, W. J.; Fuller, W.; Hamilton, L. D. Stereochemistry of Intercalation: Interaction of Daunomycin with DNA. Nat. N. Biol. 1972, 235, 17-19.
    • (1972) Nat. N. Biol. , vol.235 , pp. 17-19
    • Pigram, W.J.1    Fuller, W.2    Hamilton, L.D.3
  • 6
    • 0017178490 scopus 로고
    • Effect of Adriamycin on DNA, RNA Protein Synthesis in Cell-Free Systems and Intact Cells
    • Momparler, R. L.; Karon, M.; Siegel, S. E.; Avila, F. Effect of Adriamycin on DNA, RNA, and Protein Synthesis in Cell-Free Systems and Intact Cells. Cancer Res. 1976, 36, 2891-2895.
    • (1976) Cancer Res. , vol.36 , pp. 2891-2895
    • Momparler, R.L.1    Karon, M.2    Siegel, S.E.3    Avila, F.4
  • 7
    • 0021151237 scopus 로고
    • Adriamycin-Induced DNA Damage Mediated by Mammalian DNA Topoisomerase II
    • Tewey, K. M.; Rowe, T. C.; Yang, L.; Halligan, B. D.; Lui, L. F. Adriamycin-Induced DNA Damage Mediated by Mammalian DNA Topoisomerase II. Science 1984, 226, 466-468.
    • (1984) Science , vol.226 , pp. 466-468
    • Tewey, K.M.1    Rowe, T.C.2    Yang, L.3    Halligan, B.D.4    Lui, L.F.5
  • 8
    • 0025653684 scopus 로고
    • DNA Topoisomerases as Anticancer Drug Targets
    • Schneider, E.; Hsiang, Y.; Lui, L. F. DNA Topoisomerases as Anticancer Drug Targets. Adv. Pharmacol. 1990, 21, 149-183.
    • (1990) Adv. Pharmacol. , vol.21 , pp. 149-183
    • Schneider, E.1    Hsiang, Y.2    Lui, L.F.3
  • 9
    • 0021099691 scopus 로고
    • Double strand DNA cleavage by type II DNA Topoisomerase from Drosophila melanogaster
    • Sander, M.; Tsieh, T.-S. Double strand DNA cleavage by type II DNA Topoisomerase from Drosophila melanogaster. J. Biol. Chem. 1983, 258, 8421-8428.
    • (1983) J. Biol. Chem. , vol.258 , pp. 8421-8428
    • Sander, M.1    Tsieh, T.-S.2
  • 10
    • 0034635186 scopus 로고    scopus 로고
    • Identification and Characterization of the MDR1 Promoter-Enhancing Factor 1 (MEF1) in the Multidrug Resistant HL60/VCR Human Acute Myeloid Leukemia Cell Line
    • Ogretmen, B.; Safa, A. R. Identification and Characterization of the MDR1 Promoter-Enhancing Factor 1 (MEF1) in the Multidrug Resistant HL60/VCR Human Acute Myeloid Leukemia Cell Line. Biochemistry 2000, 39, 194-204.
    • (2000) Biochemistry , vol.39 , pp. 194-204
    • Ogretmen, B.1    Safa, A.R.2
  • 11
    • 0023151436 scopus 로고
    • Interactions between an Anthracycline Antibiotic and DNA: Molecular Structure of Daunomycin Complexed to d(CpGpTpApCpG) at 1.2-Å Resolution
    • Wang, A. H. J.; Ughetto, G.; Quigley, G. J.; Rich, A. Interactions Between an Anthracycline Antibiotic and DNA: Molecular Structure of Daunomycin Complexed to d(CpGpTpApCpG) at 1.2-Å Resolution. Biochemistry 1987, 26, 1152-1163.
    • (1987) Biochemistry , vol.26 , pp. 1152-1163
    • Wang, A.H.J.1    Ughetto, G.2    Quigley, G.J.3    Rich, A.4
  • 12
    • 0024399696 scopus 로고
    • DNA-Drug Interactions. The Crystal Structure of d(CGATCG) Complexed with Daunomycin
    • Moore, M. H.; Junter, W. N.; d'Estaintot, B. L.; Kennard, O. DNA-Drug Interactions. The Crystal Structure of d(CGATCG) Complexed With Daunomycin. J. Mol. Biol. 1989, 206, 693-705.
    • (1989) J. Mol. Biol. , vol.206 , pp. 693-705
    • Moore, M.H.1    Junter, W.N.2    D'Estaintot, B.L.3    Kennard, O.4
  • 13
    • 0022339618 scopus 로고
    • A Theoretical Investigation on the Sequence Selective Binding of Daunomycin to Double-Stranded Polynucleotides
    • Chen, K. X.; Gresh, N.; Pullman, B. A Theoretical Investigation on the Sequence Selective Binding of Daunomycin to Double-Stranded Polynucleotides. J. Biomol. Struct. Dyn. 1985, 3, 445-466.
    • (1985) J. Biomol. Struct. Dyn. , vol.3 , pp. 445-466
    • Chen, K.X.1    Gresh, N.2    Pullman, B.3
  • 14
    • 0023549371 scopus 로고
    • Site and Sequence Specificity of the Daunomycin-DNA Interaction
    • Chaires, J. B.; Fox, K. R.; Herrerra, J. E.; Britt, M.; Waring, M. J. Site and Sequence Specificity of the Daunomycin-DNA Interaction. Biochemistry 1987, 26, 8227-8236.
    • (1987) Biochemistry , vol.26 , pp. 8227-8236
    • Chaires, J.B.1    Fox, K.R.2    Herrerra, J.E.3    Britt, M.4    Waring, M.J.5
  • 15
    • 0023829528 scopus 로고
    • The 5′-CA DNA-Sequence Preference of Daunomycin
    • Skorobogaty, A.; White, R. J.; Phillips, D. R.; Reiss, J. A. The 5′-CA DNA-Sequence Preference of Daunomycin. FEBS Lett. 1988, 227 (2), 103-106.
    • (1988) FEBS Lett. , vol.227 , Issue.2 , pp. 103-106
    • Skorobogaty, A.1    White, R.J.2    Phillips, D.R.3    Reiss, J.A.4
  • 16
    • 0025376127 scopus 로고
    • Induction of Stable Transcriptional Blockage Sites by Adriamycin: GpC Specificity of Apparent Adriamycin-DNA Adducts and Dependence on Iron(III) Ions
    • Cullinane, C. R.; Phillips, D. R. Induction of Stable Transcriptional Blockage Sites By Adriamycin: GpC Specificity of Apparent Adriamycin-DNA Adducts and Dependence On Iron(III) Ions. Biochemistry 1990, 29, 5638-5646.
    • (1990) Biochemistry , vol.29 , pp. 5638-5646
    • Cullinane, C.R.1    Phillips, D.R.2
  • 17
    • 0020619667 scopus 로고
    • Adriamycin and Daunorubicin Bind in a Cooperative Manner to Deoxyribonucleic Acid
    • Graves, D. E.; Krugh, T. R. Adriamycin and Daunorubicin Bind in a Cooperative Manner to Deoxyribonucleic Acid. Biochemistry 1983, 22 (16), 3941-3947.
    • (1983) Biochemistry , vol.22 , Issue.16 , pp. 3941-3947
    • Graves, D.E.1    Krugh, T.R.2
  • 18
    • 0024357103 scopus 로고
    • In Vitro Transcription Analysis of the Role of Flanking Sequence on the DNA Sequence Specificity of Adriamycin
    • Trist, H.; Phillips, D. R. In Vitro Transcription Analysis of the Role of Flanking Sequence on the DNA Sequence Specificity of Adriamycin. Nucleic Acids Res. 1989, 17, 3673-3688.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 3673-3688
    • Trist, H.1    Phillips, D.R.2
  • 19
    • 0025298798 scopus 로고
    • Preferential Binding of Daunomycin to 5′-(A/T)CG and 5′-(T/A)GC Sequences Revealed by Footprinting Titration Experiments
    • Chaires, J. B.; Herrerra, J. E. Preferential Binding of Daunomycin to 5′-(A/T)CG and 5′-(T/A)GC Sequences Revealed by Footprinting Titration Experiments. Biochemistry 1990, 29, 6145-6153.
    • (1990) Biochemistry , vol.29 , pp. 6145-6153
    • Chaires, J.B.1    Herrerra, J.E.2
  • 21
    • 0032531740 scopus 로고    scopus 로고
    • Identification and Hydropathic Characterization of Structural Features Affecting Sequence Specificity for Doxorubicin Intercalation into DNA Double-Stranded Polynucleotides
    • Kellogg, G. E.; Scarsdale, J. N.; Fornari, F. A. Identification and Hydropathic Characterization of Structural Features Affecting Sequence Specificity for Doxorubicin Intercalation into DNA Double-Stranded Polynucleotides. Nucleic Acids Res. 1998, 26 (20), 4721-4732.
    • (1998) Nucleic Acids Res. , vol.26 , Issue.20 , pp. 4721-4732
    • Kellogg, G.E.1    Scarsdale, J.N.2    Fornari, F.A.3
  • 24
    • 0023465103 scopus 로고
    • Extension of the Fragment Method to Calculate Amino Acid Zwitterion and Side Chain Partition Coefficients
    • Hansch, C.; Leo, A. J. Extension of the Fragment Method to Calculate Amino Acid Zwitterion and Side Chain Partition Coefficients. Proteins: Struct., Funct., Genet. 1987, 2, 130-152.
    • (1987) Proteins: Struct., Funct., Genet. , vol.2 , pp. 130-152
    • Hansch, C.1    Leo, A.J.2
  • 25
    • 0034701042 scopus 로고    scopus 로고
    • Computational Methodology for Estimating Changes in Free Energies of Biomolecular Association upon Mutation. The Importance of Bound Water in Dimer-Tetramer Assembly for β-37 Mutant Hemoglobins
    • Burnett, J. C.; Kellogg, G. E.; Abraham, D. J. Computational Methodology for Estimating Changes in Free Energies of Biomolecular Association upon Mutation. The Importance of Bound Water in Dimer-Tetramer Assembly for β-37 Mutant Hemoglobins. Biochemistry 2000, 39 (7), 1622-1633.
    • (2000) Biochemistry , vol.39 , Issue.7 , pp. 1622-1633
    • Burnett, J.C.1    Kellogg, G.E.2    Abraham, D.J.3
  • 26
    • 0037030649 scopus 로고    scopus 로고
    • Simple, Intuitive Calculations of Free Energy of Binding for Protein-Ligand Complexes. 1. Models without Explicit Constrained Water
    • Cozzini, P.; Fornabaio, M.; Marabotti, A.; Abraham, D. J.; Kellogg, G. E.; Mozzarelli, A. Simple, Intuitive Calculations of Free Energy of Binding for Protein-Ligand Complexes. 1. Models without Explicit Constrained Water. J. Med. Chem. 2002, 45 (12), 2469-2483.
    • (2002) J. Med. Chem. , vol.45 , Issue.12 , pp. 2469-2483
    • Cozzini, P.1    Fornabaio, M.2    Marabotti, A.3    Abraham, D.J.4    Kellogg, G.E.5    Mozzarelli, A.6
  • 27
    • 0035931347 scopus 로고    scopus 로고
    • Which Aminoglycoside Ring Is Most Important for Binding? A Hydropathic Analysis of Gentamicin, Paromomycin, and Analogues
    • Cashman, D. J.; Rife, J. P.; Kellogg, G. E. Which Aminoglycoside Ring Is Most Important For Binding? A Hydropathic Analysis of Gentamicin, Paromomycin, and Analogues. Bioorg., Med. Chem. Lett. 2001, 11, 119-122.
    • (2001) Bioorg., Med. Chem. Lett. , vol.11 , pp. 119-122
    • Cashman, D.J.1    Rife, J.P.2    Kellogg, G.E.3
  • 28
    • 0043163784 scopus 로고    scopus 로고
    • Hydropathic Analysis of the Free Energy Differences in Anthracycline Antibiotic Binding to DNA
    • Cashman, D. J.; Scarsdale, J. N.; Kellogg, G. E. Hydropathic Analysis of the Free Energy Differences in Anthracycline Antibiotic Binding to DNA. Nucleic Acids Res. 2003, 31 (15), 4410-4416.
    • (2003) Nucleic Acids Res. , vol.31 , Issue.15 , pp. 4410-4416
    • Cashman, D.J.1    Scarsdale, J.N.2    Kellogg, G.E.3
  • 29
    • 0021871375 scopus 로고
    • A Computational Procedure for Determining Energetically-Favorable Binding Sites on Biologically Important Macromolecules
    • Goodford, P. J. A Computational Procedure For Determining Energetically-Favorable Binding Sites on Biologically Important Macromolecules. J. Med. Chem. 1985, 28, 849-857.
    • (1985) J. Med. Chem. , vol.28 , pp. 849-857
    • Goodford, P.J.1
  • 30
    • 0035835086 scopus 로고    scopus 로고
    • Hydration Changes for DNA Intercalation Reactions
    • Qu, X.; Chaires, J. B. Hydration Changes for DNA Intercalation Reactions. J. Am. Chem. Soc. 2001, 123 (1), 1-7.
    • (2001) J. Am. Chem. Soc. , vol.123 , Issue.1 , pp. 1-7
    • Qu, X.1    Chaires, J.B.2
  • 31
    • 0028875749 scopus 로고
    • Molecular Structure of the Halogenated Anti-Cancer Drug Iododoxorubicin Complexed with d(TGTACA) and d(CGATCG)
    • Berger, I.; Su, L.; Spitzner, J. R.; Kang, C.; Burke, T. G.; Rich, A. Molecular Structure of the Halogenated Anti-Cancer Drug Iododoxorubicin Complexed with d(TGTACA) and d(CGATCG). Nucleic Acids Res. 1995, 23, 4488-4494.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4488-4494
    • Berger, I.1    Su, L.2    Spitzner, J.R.3    Kang, C.4    Burke, T.G.5    Rich, A.6
  • 32
    • 0016816459 scopus 로고
    • Adriamycin (NSC-123127): New Chemical Developments and Analogues
    • Arcamone, F.; Penco, S.; Vigevani, A. Adriamycin (NSC-123127): New Chemical Developments and Analogues. Cancer Chemotherapy Rep., Pt. 3, 1975, 6 (2), 123-129.
    • (1975) Cancer Chemotherapy Rep., Pt. 3 , vol.6 , Issue.2 , pp. 123-129
    • Arcamone, F.1    Penco, S.2    Vigevani, A.3
  • 33
    • 0029812019 scopus 로고    scopus 로고
    • Substitutions at C2′ of Daunosamine in the Anticancer Drug Daunorubicin Alter its DNA-Binding Sequence Specificity
    • Gao, Y.-G.; Priebe, W.; Wang, A. H.-J. Substitutions at C2′ of Daunosamine in the Anticancer Drug Daunorubicin Alter its DNA-Binding Sequence Specificity. Eur. J. Biochem. 1996, 240, 331-335.
    • (1996) Eur. J. Biochem. , vol.240 , pp. 331-335
    • Gao, Y.-G.1    Priebe, W.2    Wang, A.H.-J.3
  • 34
    • 1542302622 scopus 로고    scopus 로고
    • U.S. Pat. No. 5, 977, 327, 1999
    • Dziewiszek, K.; Priebe, W. U.S. Pat. No. 5, 977, 327, 1999.
    • Dziewiszek, K.1    Priebe, W.2
  • 35
    • 0026033474 scopus 로고
    • Doxorubicin Analogues Incorporating Chemically Reactive Substituents
    • Farquhar, D.; Newman, R. A.; Zuckerman, J. E.; Anderson, B. S. Doxorubicin Analogues Incorporating Chemically Reactive Substituents. J. Med. Chem. 1991, 34, 561-564.
    • (1991) J. Med. Chem. , vol.34 , pp. 561-564
    • Farquhar, D.1    Newman, R.A.2    Zuckerman, J.E.3    Anderson, B.S.4
  • 36
    • 0015383341 scopus 로고
    • Antitumor Activity of Some Derivatives of Daunorubicin at the Amino and Methyl Ketone Functions
    • Yamamoto, K.; Acton, E. M.; Henry, D. W. Antitumor Activity of Some Derivatives of Daunorubicin at the Amino and Methyl Ketone Functions. J. Med. Chem. 1972, 15 (8), 872-875.
    • (1972) J. Med. Chem. , vol.15 , Issue.8 , pp. 872-875
    • Yamamoto, K.1    Acton, E.M.2    Henry, D.W.3
  • 39
    • 0019882720 scopus 로고
    • Synthesis and Antitumor Activity of 7-O-(3,4-Di-O-Acetyl-2,6-Dideoxy-α-L-lyxo-Hexopyranosyl)Adriamycinone
    • Horton, D.; Priebe, W.; Turner, W. R. Synthesis and Antitumor Activity of 7-O-(3,4-Di-O-Acetyl-2,6-Dideoxy-α-L-lyxo-Hexopyranosyl)Adriamycinone. Carbohydrate Res. 1981, 94, 11-25.
    • (1981) Carbohydrate Res. , vol.94 , pp. 11-25
    • Horton, D.1    Priebe, W.2    Turner, W.R.3
  • 40
    • 0018740998 scopus 로고
    • Synthesis of daunorubicin analogues with novel 9-acyl substituents
    • Smith, T. H.; Fujiwara, A. N.; Henry, D. W. Synthesis of daunorubicin analogues with novel 9-acyl substituents. J. Med. Chem. 1979, 22 (1), 40-44.
    • (1979) J. Med. Chem. , vol.22 , Issue.1 , pp. 40-44
    • Smith, T.H.1    Fujiwara, A.N.2    Henry, D.W.3
  • 42
    • 0025463737 scopus 로고
    • Electrophilic Analogues of Daunorubicin and Doxorubicin
    • Rosik, L.; Sweet, F. Electrophilic Analogues of Daunorubicin and Doxorubicin. Bioconjugate Chem. 1990, 1, 251-256.
    • (1990) Bioconjugate Chem. , vol.1 , pp. 251-256
    • Rosik, L.1    Sweet, F.2
  • 43
    • 0024271425 scopus 로고
    • MX2, A Morpholino Anthracycline, As A New Antitumor Agent Against Drug-Sensitive and Multidrug-Resistant Human and Murine Tumor Cells
    • Watanabe, M.; Komeshima, N.; Nakajima, S.; Tsuruo, T. MX2, A Morpholino Anthracycline, As A New Antitumor Agent Against Drug-Sensitive and Multidrug-Resistant Human and Murine Tumor Cells. Cancer Res. 1988, 48, 6653-6657.
    • (1988) Cancer Res. , vol.48 , pp. 6653-6657
    • Watanabe, M.1    Komeshima, N.2    Nakajima, S.3    Tsuruo, T.4
  • 44
    • 0033649249 scopus 로고    scopus 로고
    • A Simple Model for Predicting the Free Energy of Binding between Anthracycline Antibiotics DNA
    • Rudnicki, W. R.; Kurzepa, M.; Szczepanik, T.; Priebe, W.; Lesyng, B. A Simple Model for Predicting the Free Energy of Binding Between Anthracycline Antibiotics and DNA. Acta Biochim. Pol. 2000, 47 (1), 1-9.
    • (2000) Acta Biochim. Pol. , vol.47 , Issue.1 , pp. 1-9
    • Rudnicki, W.R.1    Kurzepa, M.2    Szczepanik, T.3    Priebe, W.4    Lesyng, B.5
  • 45
    • 0018618916 scopus 로고
    • Adriamycin Analogues Hydroxylated at C-3′: Synthesis and Antitumor Activity
    • Horton, D.; Turner, W. R. Adriamycin Analogues Hydroxylated at C-3′: Synthesis and Antitumor Activity. Carbohydrate Res. 1979, 77, C8-C11.
    • (1979) Carbohydrate Res. , vol.77
    • Horton, D.1    Turner, W.R.2
  • 46
    • 0024467056 scopus 로고
    • A Fluorine-Containing Anthracycline (ME-2303) As A New Antitumor Agent Against Murine and Human Tumors and Their Multidrug-Resistant Sublines
    • Tsuruo, T.; Yusa, K.; Sudo, Y.; Takamori, R.; Sugimoto, Y. A Fluorine-Containing Anthracycline (ME-2303) As A New Antitumor Agent Against Murine and Human Tumors and Their Multidrug-Resistant Sublines. Cancer Res. 1989, 49, 5537-5542.
    • (1989) Cancer Res. , vol.49 , pp. 5537-5542
    • Tsuruo, T.1    Yusa, K.2    Sudo, Y.3    Takamori, R.4    Sugimoto, Y.5


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