-
1
-
-
0033895840
-
Effects of limited aeration and of the ArcAB system on intermediary pyruvate catabolism in Escherichia coli
-
Alexeeva S., de Kort B., Sawers G., Hellingwerf K.J., and de Mattos M.J. Effects of limited aeration and of the ArcAB system on intermediary pyruvate catabolism in Escherichia coli. J. Bacteriol. 182 (2000) 4934-4940
-
(2000)
J. Bacteriol.
, vol.182
, pp. 4934-4940
-
-
Alexeeva, S.1
de Kort, B.2
Sawers, G.3
Hellingwerf, K.J.4
de Mattos, M.J.5
-
2
-
-
0037216801
-
Requirement of ArcA for redox regulation in E. coli under microaerobic but not anaerobic or aerobic conditions
-
Alexeeva S., Hellingwerf K.J., and Teixeira de Mattos M.J. Requirement of ArcA for redox regulation in E. coli under microaerobic but not anaerobic or aerobic conditions. J. Bacteriol. 185 (2003) 204-209
-
(2003)
J. Bacteriol.
, vol.185
, pp. 204-209
-
-
Alexeeva, S.1
Hellingwerf, K.J.2
Teixeira de Mattos, M.J.3
-
3
-
-
18844392599
-
Identifying gene targets for the metabolic engineering of lycopene biosynthesis in E. coli
-
Alper H., Jin Y., Moxley J.F., and Stephanopoulos G. Identifying gene targets for the metabolic engineering of lycopene biosynthesis in E. coli. Metab. Eng. 7 (2005) 155-164
-
(2005)
Metab. Eng.
, vol.7
, pp. 155-164
-
-
Alper, H.1
Jin, Y.2
Moxley, J.F.3
Stephanopoulos, G.4
-
4
-
-
31544450286
-
-
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K.A., Tomita, M., Wanner, B.L., Mori, H., 2006. Construction of E. coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:msb4100050-E1; msb4100050-E11.
-
-
-
-
5
-
-
0002739483
-
Derivations and genotypes of some mutant derivatives of E. coli K-12
-
Neidhardt F.C., Curtiss III R., Ingraham J.L., Lin E.C.C., Low K.B., Magasanik B., Reznikoff W.S., Riley M., Schaechter M., and Umbarger H.E. (Eds), ASM Press, Washington, DC
-
Bachmann B.J. Derivations and genotypes of some mutant derivatives of E. coli K-12. In: Neidhardt F.C., Curtiss III R., Ingraham J.L., Lin E.C.C., Low K.B., Magasanik B., Reznikoff W.S., Riley M., Schaechter M., and Umbarger H.E. (Eds). E. coli and Salmonella: Cellular and Molecular Biology. second ed (1996), ASM Press, Washington, DC 2460-2488
-
(1996)
E. coli and Salmonella: Cellular and Molecular Biology. second ed
, pp. 2460-2488
-
-
Bachmann, B.J.1
-
6
-
-
0030571217
-
Inverse metabolic engineering: a strategy for directed genetic engineering of useful phenotypes
-
Bailey J.E., Sburlati A., Hatzimanikatis V., Lee K., Renner W.A., and Tsai P.S. Inverse metabolic engineering: a strategy for directed genetic engineering of useful phenotypes. Biotechnol. Bioeng. 55 (1996) 109-121
-
(1996)
Biotechnol. Bioeng.
, vol.55
, pp. 109-121
-
-
Bailey, J.E.1
Sburlati, A.2
Hatzimanikatis, V.3
Lee, K.4
Renner, W.A.5
Tsai, P.S.6
-
7
-
-
0242487787
-
Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
-
Burgard A.P., Pharkya P., and Maranas C.D. Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization. Biotechnol. Bioeng. 84 (2003) 647-657
-
(2003)
Biotechnol. Bioeng.
, vol.84
, pp. 647-657
-
-
Burgard, A.P.1
Pharkya, P.2
Maranas, C.D.3
-
8
-
-
0027155827
-
Energetic efficiency of E. coli: effects of mutations in components of the aerobic respiratory chain
-
Calhoun M.W., Oden K.L., Gennis R.B., de Mattos M.J.T., and Neijssel O.M. Energetic efficiency of E. coli: effects of mutations in components of the aerobic respiratory chain. J. Bacteriol. 175 (1993) 3020-3025
-
(1993)
J. Bacteriol.
, vol.175
, pp. 3020-3025
-
-
Calhoun, M.W.1
Oden, K.L.2
Gennis, R.B.3
de Mattos, M.J.T.4
Neijssel, O.M.5
-
9
-
-
1842525835
-
Fundamental E. coli biochemical pathways for biomass and energy production: creation of overall flux states
-
Carlson R., and Srienc F. Fundamental E. coli biochemical pathways for biomass and energy production: creation of overall flux states. Biotechnol. Bioeng. 86 (2004) 149-161
-
(2004)
Biotechnol. Bioeng.
, vol.86
, pp. 149-161
-
-
Carlson, R.1
Srienc, F.2
-
10
-
-
0347761259
-
Fundamental E. coli biochemical pathways for biomass and energy production: identification of reactions
-
Carlson R., and Srienc F. Fundamental E. coli biochemical pathways for biomass and energy production: identification of reactions. Biotechnol. Bioeng. 85 (2004) 1-18
-
(2004)
Biotechnol. Bioeng.
, vol.85
, pp. 1-18
-
-
Carlson, R.1
Srienc, F.2
-
11
-
-
0034612342
-
One-step inactivation of chromosomal genes in E. coli K-12 using PCR products
-
Datsenko K.A., and Wanner B.L. One-step inactivation of chromosomal genes in E. coli K-12 using PCR products. PNAS 97 (2000) 6640-6645
-
(2000)
PNAS
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
12
-
-
0037335931
-
Metabolic flux profiling of E. coli mutants in central carbon metabolism using GC-MS
-
Fischer E., and Sauer U. Metabolic flux profiling of E. coli mutants in central carbon metabolism using GC-MS. Eur. J. Biochem. 270 (2003) 880-891
-
(2003)
Eur. J. Biochem.
, vol.270
, pp. 880-891
-
-
Fischer, E.1
Sauer, U.2
-
13
-
-
25144505718
-
In silico design and adaptive evolution of E. coli for production of lactic acid
-
Fong S.S., Burgard A.P., Herring C.D., Knight E.M., Blattner F.R., Maranas C.D., and Palsson B.O. In silico design and adaptive evolution of E. coli for production of lactic acid. Biotechnol. Bioeng. 91 (2005) 643-648
-
(2005)
Biotechnol. Bioeng.
, vol.91
, pp. 643-648
-
-
Fong, S.S.1
Burgard, A.P.2
Herring, C.D.3
Knight, E.M.4
Blattner, F.R.5
Maranas, C.D.6
Palsson, B.O.7
-
14
-
-
0014272137
-
Selection of E. coli mutants lacking glucose-6-phosphate dehydrogenase or gluconate-6-phosphate dehydrogenase
-
Fraenkel D.G. Selection of E. coli mutants lacking glucose-6-phosphate dehydrogenase or gluconate-6-phosphate dehydrogenase. J. Bacteriol. 95 (1967) 1267-1271
-
(1967)
J. Bacteriol.
, vol.95
, pp. 1267-1271
-
-
Fraenkel, D.G.1
-
15
-
-
0014010920
-
Regulation of pyruvate dehydrogenase activity in E. coli K12
-
Hansen H.G., and Henning U. Regulation of pyruvate dehydrogenase activity in E. coli K12. Biochim. Biophys. Acta 122 2 (1996) 355-358
-
(1996)
Biochim. Biophys. Acta
, vol.122
, Issue.2
, pp. 355-358
-
-
Hansen, H.G.1
Henning, U.2
-
16
-
-
13444262374
-
EcoCyc: a comprehensive database resource for E. coli
-
Keseler I.M., Collado-Vides J., Gama-Castro S., Ingraham J., Paley S., Paulsen I.T., Peralta-Gil M., and Karp P.D. EcoCyc: a comprehensive database resource for E. coli. Nucleic Acids Res. 33 (2005) D334-D337
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Keseler, I.M.1
Collado-Vides, J.2
Gama-Castro, S.3
Ingraham, J.4
Paley, S.5
Paulsen, I.T.6
Peralta-Gil, M.7
Karp, P.D.8
-
17
-
-
32144453095
-
Generalized concept of minimal cut sets in biochemical networks
-
Klamt S. Generalized concept of minimal cut sets in biochemical networks. BioSystems 83 (2006) 233-247
-
(2006)
BioSystems
, vol.83
, pp. 233-247
-
-
Klamt, S.1
-
18
-
-
1042269472
-
Minimal cut sets in biochemical reaction networks
-
Klamt S., and Gilles E.D. Minimal cut sets in biochemical reaction networks. Bioinformatics 20 (2004) 226-234
-
(2004)
Bioinformatics
, vol.20
, pp. 226-234
-
-
Klamt, S.1
Gilles, E.D.2
-
19
-
-
0344052685
-
METATOOL: for studying metabolic networks
-
Pfeiffer T., Sanchez-Valdenebro I., Nuno J., Montero F., and Schuster S. METATOOL: for studying metabolic networks. Bioinformatics 15 (1999) 251-257
-
(1999)
Bioinformatics
, vol.15
, pp. 251-257
-
-
Pfeiffer, T.1
Sanchez-Valdenebro, I.2
Nuno, J.3
Montero, F.4
Schuster, S.5
-
20
-
-
0030860064
-
Versatile insertion plasmids for targeted genome manipulations in bacteria: isolation, deletion, and rescue of the pathogenicity island LEE of the E. coli O157:H7 genome
-
Posfai G., Koob M.D., Kirkpatrick H.A., and Blattner F.R. Versatile insertion plasmids for targeted genome manipulations in bacteria: isolation, deletion, and rescue of the pathogenicity island LEE of the E. coli O157:H7 genome. J. Bacteriol. 179 (1997) 4426-4428
-
(1997)
J. Bacteriol.
, vol.179
, pp. 4426-4428
-
-
Posfai, G.1
Koob, M.D.2
Kirkpatrick, H.A.3
Blattner, F.R.4
-
21
-
-
1342325419
-
The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of E. coli
-
Sauer U., Canonaco F., Heri S., Perrenoud A., and Fischer E. The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of E. coli. J. Biol. Chem. 279 (2004) 6613-6619
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6613-6619
-
-
Sauer, U.1
Canonaco, F.2
Heri, S.3
Perrenoud, A.4
Fischer, E.5
-
22
-
-
0036691976
-
Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism
-
Schuster S., Hilgetag C., Woods J.H., and Fell D.A. Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism. J. Math. Biol. 45 (2002) 153-181
-
(2002)
J. Math. Biol.
, vol.45
, pp. 153-181
-
-
Schuster, S.1
Hilgetag, C.2
Woods, J.H.3
Fell, D.A.4
-
23
-
-
0037069467
-
Analysis of optimality in natural and perturbed metabolic networks
-
Segre D., Vitkup D., and Church G.M. Analysis of optimality in natural and perturbed metabolic networks. PNAS 99 (2002) 15112-15117
-
(2002)
PNAS
, vol.99
, pp. 15112-15117
-
-
Segre, D.1
Vitkup, D.2
Church, G.M.3
-
24
-
-
0032693327
-
Functional genomics: expression analysis of E. coli growing on minimal and rich media
-
Tao H., Bausch C., Richmond C., Blattner F.R., and Conway T. Functional genomics: expression analysis of E. coli growing on minimal and rich media. J. Bacteriol. 181 (1999) 6425-6440
-
(1999)
J. Bacteriol.
, vol.181
, pp. 6425-6440
-
-
Tao, H.1
Bausch, C.2
Richmond, C.3
Blattner, F.R.4
Conway, T.5
-
25
-
-
33746929855
-
The fractional contributions of elementary modes to the metabolism of E. coli and their estimation from reaction entropies
-
Wlaschin A.P., Trinh C.T., Carlson R., and Srienc F. The fractional contributions of elementary modes to the metabolism of E. coli and their estimation from reaction entropies. Metab. Eng. 8 (2006) 338-352
-
(2006)
Metab. Eng.
, vol.8
, pp. 338-352
-
-
Wlaschin, A.P.1
Trinh, C.T.2
Carlson, R.3
Srienc, F.4
-
26
-
-
2342565059
-
Effect of zwf gene knockout on the metabolism of E. coli grown on glucose or acetate
-
Zhao J., Baba T., Mori H., and Shimizu K. Effect of zwf gene knockout on the metabolism of E. coli grown on glucose or acetate. Metab. Eng. 6 (2004) 164-174
-
(2004)
Metab. Eng.
, vol.6
, pp. 164-174
-
-
Zhao, J.1
Baba, T.2
Mori, H.3
Shimizu, K.4
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