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Volumn 28, Issue 10, 2008, Pages 3089-3100

Different mechanisms for pseudouridine formation in yeast 5S and 5.8S rRNAs

Author keywords

[No Author keywords available]

Indexed keywords

PSEUDOURIDINE; RIBOSOME RNA; SMALL NUCLEOLAR RIBONUCLEOPROTEIN; SYNTHETASE; TRANSFER RNA;

EID: 43249108205     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.01574-07     Document Type: Article
Times cited : (24)

References (116)
  • 4
    • 0038721061 scopus 로고    scopus 로고
    • A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast
    • Badis, G., M. Fromont-Racine, and A. Jacquier. 2003. A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast. RNA 9:771-779.
    • (2003) RNA , vol.9 , pp. 771-779
    • Badis, G.1    Fromont-Racine, M.2    Jacquier, A.3
  • 5
    • 18844397555 scopus 로고    scopus 로고
    • RNA-guided RNA modification: Functional organization of the archaeal H/ACA RNP
    • Baker, D. L., O. A. Youssef, M. I. R. Chastkofsky, D. A. Dy, R. M. Terns, and M. P. Terns. 2005. RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP. Genes Dev. 19:1238-1248.
    • (2005) Genes Dev , vol.19 , pp. 1238-1248
    • Baker, D.L.1    Youssef, O.A.2    Chastkofsky, M.I.R.3    Dy, D.A.4    Terns, R.M.5    Terns, M.P.6
  • 6
    • 0028071999 scopus 로고
    • Clustering of pseudouridine residues around the peptidyltransferase center of yeast cytoplasmic and mitochondrial ribosomes
    • Bakin, A., B. G. Lane, and J. Ofengand. 1994. Clustering of pseudouridine residues around the peptidyltransferase center of yeast cytoplasmic and mitochondrial ribosomes. Biochemistry 33:13475-13483.
    • (1994) Biochemistry , vol.33 , pp. 13475-13483
    • Bakin, A.1    Lane, B.G.2    Ofengand, J.3
  • 7
    • 0029143665 scopus 로고
    • Mapping of the 13 pseudouridine residues in Saccharomyces cerevisiae small subunit ribosomal RNA to nucleotide resolution
    • Bakin, A., and J. Ofengand. 1995. Mapping of the 13 pseudouridine residues in Saccharomyces cerevisiae small subunit ribosomal RNA to nucleotide resolution. Nucleic Acids Res. 23:3290-3294.
    • (1995) Nucleic Acids Res , vol.23 , pp. 3290-3294
    • Bakin, A.1    Ofengand, J.2
  • 8
    • 34249868208 scopus 로고    scopus 로고
    • Optimization of ribosome structure and function by rRNA base modification
    • Baxter-Roshek, J. L., A. N. Petrov, and J. D. Dinman. 2007. Optimization of ribosome structure and function by rRNA base modification. PLoS One 2:e174.
    • (2007) PLoS One , vol.2
    • Baxter-Roshek, J.L.1    Petrov, A.N.2    Dinman, J.D.3
  • 9
    • 0142147324 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae U2 snRNA:pseudouridine- synthase Pus7 is a novel multisite-multisubstrate RNA:ψ-synthase also acting on tRNAs
    • Behm-Ansmant, I., A. Urban, X. Ma, Y.-T. Yu, Y. Motorin, and C. Branlant. 2003. The Saccharomyces cerevisiae U2 snRNA:pseudouridine- synthase Pus7 is a novel multisite-multisubstrate RNA:ψ-synthase also acting on tRNAs. RNA 9:1371-1382.
    • (2003) RNA , vol.9 , pp. 1371-1382
    • Behm-Ansmant, I.1    Urban, A.2    Ma, X.3    Yu, Y.-T.4    Motorin, Y.5    Branlant, C.6
  • 10
    • 4544382906 scopus 로고    scopus 로고
    • The snoRNPs and related machines: Ancient devices that mediate maturation of rRNA and other RNAs
    • M. O. J. Olson ed, Kluwer Academic/Plenum Publishers, New York, NY
    • Bertrand, E., and M. J. Fournier. 2004. The snoRNPs and related machines: ancient devices that mediate maturation of rRNA and other RNAs, p. 223-257. In M. O. J. Olson (ed.), The nucleolus. Kluwer Academic/Plenum Publishers, New York, NY.
    • (2004) The nucleolus , pp. 223-257
    • Bertrand, E.1    Fournier, M.J.2
  • 12
    • 0030837031 scopus 로고    scopus 로고
    • A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs
    • Bousquet-Antonelli, C., Y. Henry, J.-P. Gélugne, M. Caizergues-Ferrer, and T. Kiss. 1997. A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs. EMBO J. 16:4770-4776.
    • (1997) EMBO J , vol.16 , pp. 4770-4776
    • Bousquet-Antonelli, C.1    Henry, Y.2    Gélugne, J.-P.3    Caizergues-Ferrer, M.4    Kiss, T.5
  • 13
    • 0034747718 scopus 로고    scopus 로고
    • Cross talk between tRNA and rRNA synthesis in Saccharomyces cerevisiae
    • Briand, J.-F., F. Navarro, O. Gadal, and P. Thuriaux. 2001. Cross talk between tRNA and rRNA synthesis in Saccharomyces cerevisiae. Mol. Cell. Biol. 21:189-195.
    • (2001) Mol. Cell. Biol , vol.21 , pp. 189-195
    • Briand, J.-F.1    Navarro, F.2    Gadal, O.3    Thuriaux, P.4
  • 16
    • 0033935223 scopus 로고    scopus 로고
    • Pseudouridine in RNA: What, where, how, and why
    • Charette, M., and M. W. Gray. 2000. Pseudouridine in RNA: what, where, how, and why. IUBMB Life 49:341-351.
    • (2000) IUBMB Life , vol.49 , pp. 341-351
    • Charette, M.1    Gray, M.W.2
  • 17
    • 20144374350 scopus 로고    scopus 로고
    • Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation
    • Charpentier, B., S. Muller, and C. Branlant. 2005. Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation. Nucleic Acids Res. 33:3133-3144.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3133-3144
    • Charpentier, B.1    Muller, S.2    Branlant, C.3
  • 19
    • 0033053644 scopus 로고    scopus 로고
    • 16S ribosomal RNA pseudouridine synthase RsuA of Escherichia coli: Deletion, mutation of the conserved Asp102 residue, and sequence comparison among all other pseudouridine synthases
    • Conrad, J., L. Niu, K. Rudd, B. G. Lane, and J. Ofengand. 1999. 16S ribosomal RNA pseudouridine synthase RsuA of Escherichia coli: deletion, mutation of the conserved Asp102 residue, and sequence comparison among all other pseudouridine synthases. RNA 5:751-763.
    • (1999) RNA , vol.5 , pp. 751-763
    • Conrad, J.1    Niu, L.2    Rudd, K.3    Lane, B.G.4    Ofengand, J.5
  • 20
    • 33644784770 scopus 로고    scopus 로고
    • Davis, C. A., and M. Ares, Jr. 2006. Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 103:3262-3267.
    • Davis, C. A., and M. Ares, Jr. 2006. Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 103:3262-3267.
  • 21
    • 0037428520 scopus 로고    scopus 로고
    • RNA-guided nucleotide modification of ribosomal and other RNAs
    • Decatur, W. A., and M. J. Fournier. 2003. RNA-guided nucleotide modification of ribosomal and other RNAs. J. Biol. Chem. 278:695-698.
    • (2003) J. Biol. Chem , vol.278 , pp. 695-698
    • Decatur, W.A.1    Fournier, M.J.2
  • 22
    • 0033612556 scopus 로고    scopus 로고
    • Assembly of 5S ribosomal RNA is required at a specific step of the pre-rRNA processing pathway
    • Dechampesme, A.-M., O. Koroleva, I. Leger-Silvestre, N. Gas, and S. Camier. 1999. Assembly of 5S ribosomal RNA is required at a specific step of the pre-rRNA processing pathway. J. Cell Biol. 145:1369-1380.
    • (1999) J. Cell Biol , vol.145 , pp. 1369-1380
    • Dechampesme, A.-M.1    Koroleva, O.2    Leger-Silvestre, I.3    Gas, N.4    Camier, S.5
  • 23
    • 0027211846 scopus 로고    scopus 로고
    • Deshmukh, M., Y.-F. Tsay, A. G. Paulovich, and J. L. Woolford, Jr. 1993. Yeast ribosomal protein L1 is required for the stability of newly synthesized 5S rRNA and the assembly of 60S ribosomal subunits. Mol. Cell. Biol. 13:2835-2845.
    • Deshmukh, M., Y.-F. Tsay, A. G. Paulovich, and J. L. Woolford, Jr. 1993. Yeast ribosomal protein L1 is required for the stability of newly synthesized 5S rRNA and the assembly of 60S ribosomal subunits. Mol. Cell. Biol. 13:2835-2845.
  • 24
    • 3042720475 scopus 로고    scopus 로고
    • Dujon, B, D. Sherman, G. Fischer, P. Durrens, S. Casaregola, I. Lafontaine, J. de Montigny, C. Marck, C. Neuvéglise, E. Talla, N. Goffard, L. Frangeul, M. Aigle, V. Anthouard, A. Babour, V. Barbe, S. Barnay, S. Blanchin, J.-M. Beckerich, E. Beyne, C. Bleykasten, A. Boisramé, J. Boyer, L. Cattolico, F. Confanioleri, A. de Daruvar, L. Despons, E. Fabre, C. Fairhead, H. Ferry-Dumazet, A. Groppi, F. Hantraye, C. Hennequin, N. Jauniaux, P. Joyet, R. Kachouri, A. Kerrest, R. Koszul, M. Lemaire, I. Lesur, L. Ma, H. Muller, J.-M. Nicaud, M. Nikolski, S. Oztas, O. Ozier-Kalogeropoulos, S. Pellenz, S. Potier, G.-F. Richard, M.-L. Straub, A. Suleau, D. Swennen, F. Tekaia, M. Wésolowski-Louvel, E. Westhof, B. Wirth, M. Zeniou-Meyer, I. Zivanovic, M. Bolotin-Fukuhara, A. Thierry, C. Bouchier, B. Caudron, C. Scarpelli, C. Gaillardin, J. Weissenbach, P. Wincker, and J.-L. Souciet. 2004. Genome evolution in yeasts. Nature 430:35-44
    • Dujon, B., D. Sherman, G. Fischer, P. Durrens, S. Casaregola, I. Lafontaine, J. de Montigny, C. Marck, C. Neuvéglise, E. Talla, N. Goffard, L. Frangeul, M. Aigle, V. Anthouard, A. Babour, V. Barbe, S. Barnay, S. Blanchin, J.-M. Beckerich, E. Beyne, C. Bleykasten, A. Boisramé, J. Boyer, L. Cattolico, F. Confanioleri, A. de Daruvar, L. Despons, E. Fabre, C. Fairhead, H. Ferry-Dumazet, A. Groppi, F. Hantraye, C. Hennequin, N. Jauniaux, P. Joyet, R. Kachouri, A. Kerrest, R. Koszul, M. Lemaire, I. Lesur, L. Ma, H. Muller, J.-M. Nicaud, M. Nikolski, S. Oztas, O. Ozier-Kalogeropoulos, S. Pellenz, S. Potier, G.-F. Richard, M.-L. Straub, A. Suleau, D. Swennen, F. Tekaia, M. Wésolowski-Louvel, E. Westhof, B. Wirth, M. Zeniou-Meyer, I. Zivanovic, M. Bolotin-Fukuhara, A. Thierry, C. Bouchier, B. Caudron, C. Scarpelli, C. Gaillardin, J. Weissenbach, P. Wincker, and J.-L. Souciet. 2004. Genome evolution in yeasts. Nature 430:35-44.
  • 26
    • 2342610542 scopus 로고    scopus 로고
    • X-ray structure of tRNA pseudouridine synthase TruD reveals an inserted domain with a novel fold
    • Ericsson, U. B., P. Nordlund, and B. M. Hallberg. 2004. X-ray structure of tRNA pseudouridine synthase TruD reveals an inserted domain with a novel fold. FEBS Lett. 565:59-64.
    • (2004) FEBS Lett , vol.565 , pp. 59-64
    • Ericsson, U.B.1    Nordlund, P.2    Hallberg, B.M.3
  • 27
    • 0036719183 scopus 로고    scopus 로고
    • Ngl2p is a Ccr4p-like RNA nuclease essential for the final step in 3′-end processing of 5.8S rRNA in Saccharomyces cerevisiae
    • Faber, A. W., M. Van Dijk, H. A. Raué, and J. C. Vos. 2002. Ngl2p is a Ccr4p-like RNA nuclease essential for the final step in 3′-end processing of 5.8S rRNA in Saccharomyces cerevisiae. RNA 8:1095-1101.
    • (2002) RNA , vol.8 , pp. 1095-1101
    • Faber, A.W.1    Van Dijk, M.2    Raué, H.A.3    Vos, J.C.4
  • 29
    • 9344261419 scopus 로고    scopus 로고
    • The RNA catabolic enzymes Rex4p, Rnt1p, and Dbr1p show genetic interaction with trans-acting factors involved in processing of ITS1 in Saccharomyces cerevisiae pre-rRNA
    • Faber, A. W., J. C. Vos, H. R. Vos, G. Ghazal, S. A. Elela, and H. A. Raué. 2004. The RNA catabolic enzymes Rex4p, Rnt1p, and Dbr1p show genetic interaction with trans-acting factors involved in processing of ITS1 in Saccharomyces cerevisiae pre-rRNA. RNA 10:1946-1956.
    • (2004) RNA , vol.10 , pp. 1946-1956
    • Faber, A.W.1    Vos, J.C.2    Vos, H.R.3    Ghazal, G.4    Elela, S.A.5    Raué, H.A.6
  • 30
    • 16344393340 scopus 로고    scopus 로고
    • Comparative genomics in hemiascomycete yeasts: Evolution of sex, silencing, and subtelomeres
    • Fabre, E., H. Muller, P. Theirizols, I. Lafontaine, B. Dujon, and C. Fairhead. 2005. Comparative genomics in hemiascomycete yeasts: evolution of sex, silencing, and subtelomeres. Mol. Biol. Evol. 22:856-873.
    • (2005) Mol. Biol. Evol , vol.22 , pp. 856-873
    • Fabre, E.1    Muller, H.2    Theirizols, P.3    Lafontaine, I.4    Dujon, B.5    Fairhead, C.6
  • 31
    • 0036270543 scopus 로고    scopus 로고
    • Transformation of yeast by lithium acctate/single-stranded carrier DNA/polyethylene glycol method
    • Gietz, R. D., and R. A. Woods. 2002. Transformation of yeast by lithium acctate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol. 350:87-96.
    • (2002) Methods Enzymol , vol.350 , pp. 87-96
    • Gietz, R.D.1    Woods, R.A.2
  • 33
    • 34047177024 scopus 로고    scopus 로고
    • Modification and editing of RNA: Historical overview and important facts to remember
    • Grosjean, H. 2005. Modification and editing of RNA: historical overview and important facts to remember. Top. Curr. Genet. 12:1-22.
    • (2005) Top. Curr. Genet , vol.12 , pp. 1-22
    • Grosjean, H.1
  • 34
    • 16544383371 scopus 로고    scopus 로고
    • Genome organization in three dimensions: Thinking outside the line
    • Haeusler, R. A., and D. R. Engelke. 2004. Genome organization in three dimensions: thinking outside the line. Cell Cycle 3:273-275.
    • (2004) Cell Cycle , vol.3 , pp. 273-275
    • Haeusler, R.A.1    Engelke, D.R.2
  • 35
    • 33750268390 scopus 로고    scopus 로고
    • Spatial organization of transcription by RNA polymerase III
    • Haeusler, R. A., and D. R. Engelke. 2006. Spatial organization of transcription by RNA polymerase III. Nucleic Acids Res. 34:4826-4836.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4826-4836
    • Haeusler, R.A.1    Engelke, D.R.2
  • 36
    • 28544449371 scopus 로고    scopus 로고
    • The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs
    • Hamma, T., S. L. Reichow, G. Varani, and A. R. Ferré- D'Amaré. 2005. The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Nat. Struct. Mol. Biol. 12:1101-1107.
    • (2005) Nat. Struct. Mol. Biol , vol.12 , pp. 1101-1107
    • Hamma, T.1    Reichow, S.L.2    Varani, G.3    Ferré- D'Amaré, A.R.4
  • 38
    • 2942610793 scopus 로고    scopus 로고
    • RNA structure and function in C/D and H/ACA s(no)RNPs
    • Henras, A. K., C. Dez, and Y. Henry. 2004. RNA structure and function in C/D and H/ACA s(no)RNPs. Curr. Opin. Struct. Biol. 14:335-343.
    • (2004) Curr. Opin. Struct. Biol , vol.14 , pp. 335-343
    • Henras, A.K.1    Dez, C.2    Henry, Y.3
  • 39
    • 0028342849 scopus 로고
    • The 5′ end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site
    • Henry, Y., H. Wood, J. P. Morrissey, E. Petfalski, S. Kearsey, and D. Tollervey. 1994. The 5′ end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site. EMBO J. 13:2452-2463.
    • (1994) EMBO J , vol.13 , pp. 2452-2463
    • Henry, Y.1    Wood, H.2    Morrissey, J.P.3    Petfalski, E.4    Kearsey, S.5    Tollervey, D.6
  • 40
    • 0035966271 scopus 로고    scopus 로고
    • Cocrystal structure of a tRNA ψ55 pseudouridine synthase: Nucleotide flipping by an RNA-modifying enzyme
    • Hoang, C., and A. R. Ferré-D'Amaré. 2001. Cocrystal structure of a tRNA ψ55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme. Cell 107:929-939.
    • (2001) Cell , vol.107 , pp. 929-939
    • Hoang, C.1    Ferré-D'Amaré, A.R.2
  • 41
    • 33845984589 scopus 로고    scopus 로고
    • Substrate recognition by RNA 5-methyluridine methyltransferases and pseudouridine synthases: A structural perspective
    • Hur, S., R. M. Stroud, and J. Finer-Moore. 2006. Substrate recognition by RNA 5-methyluridine methyltransferases and pseudouridine synthases: a structural perspective. J. Biol. Chem. 281:38969-38973.
    • (2006) J. Biol. Chem , vol.281 , pp. 38969-38973
    • Hur, S.1    Stroud, R.M.2    Finer-Moore, J.3
  • 42
    • 0038613099 scopus 로고    scopus 로고
    • Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme
    • Ishitani, R., O. Nureki, N. Nameki, N. Okada, S. Nishimura, and S. Yokoyama. 2003. Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme. Cell 113:383-394.
    • (2003) Cell , vol.113 , pp. 383-394
    • Ishitani, R.1    Nureki, O.2    Nameki, N.3    Okada, N.4    Nishimura, S.5    Yokoyama, S.6
  • 44
    • 0344080588 scopus 로고    scopus 로고
    • Modification of small nuclear RNAs occurs in the nucleoplasms Cajal body following import from the cytoplasm
    • Jády, B. E., X. Darzacq, K. E. Tucker, A. G. Matera, E. Bertrand, and T. Kiss. 2003. Modification of small nuclear RNAs occurs in the nucleoplasms Cajal body following import from the cytoplasm. EMBO J. 22:1878-1888.
    • (2003) EMBO J , vol.22 , pp. 1878-1888
    • Jády, B.E.1    Darzacq, X.2    Tucker, K.E.3    Matera, A.G.4    Bertrand, E.5    Kiss, T.6
  • 48
    • 33344476794 scopus 로고    scopus 로고
    • Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA
    • Kadaba, S., X. Wang, and J. T. Anderson. 2006. Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA. RNA 12:508-521.
    • (2006) RNA , vol.12 , pp. 508-521
    • Kadaba, S.1    Wang, X.2    Anderson, J.T.3
  • 49
    • 0038475918 scopus 로고    scopus 로고
    • A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea, and eukarya
    • Kaya, Y., and J. Ofengand. 2003. A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea, and eukarya. RNA 9:711-721.
    • (2003) RNA , vol.9 , pp. 711-721
    • Kaya, Y.1    Ofengand, J.2
  • 50
    • 0017372017 scopus 로고
    • Nucleotide sequence relationships between vertebrate 5.8 S ribosomal RNAs
    • Khan, M. S. N., and B. E. H. Maden. 1977. Nucleotide sequence relationships between vertebrate 5.8 S ribosomal RNAs. Nucleic Acids Res. 4:2495-2505.
    • (1977) Nucleic Acids Res , vol.4 , pp. 2495-2505
    • Khan, M.S.N.1    Maden, B.E.H.2
  • 51
    • 29844442763 scopus 로고    scopus 로고
    • Structural study of the H/ACA snoRNP components Nop10p and the 3′ hairpin of U65 snoRNA
    • Khanna, M., H. Wu, C. Johansson, M. Caizergues-Ferrer, and J. Feigon. 2006. Structural study of the H/ACA snoRNP components Nop10p and the 3′ hairpin of U65 snoRNA. RNA 12:40-52.
    • (2006) RNA , vol.12 , pp. 40-52
    • Khanna, M.1    Wu, H.2    Johansson, C.3    Caizergues-Ferrer, M.4    Feigon, J.5
  • 52
    • 0034769951 scopus 로고    scopus 로고
    • A well-connected and conserved nucleoplasms: Helicase is required for production of box C/D and H/ACA snoRNAs and localization of snoRNP proteins
    • King, T. H., W. A. Decatur, E. Bertrand, E. S. Maxwell, and M. J. Fournier. 2001. A well-connected and conserved nucleoplasms: helicase is required for production of box C/D and H/ACA snoRNAs and localization of snoRNP proteins. Mol. Cell. Biol. 21:7731-7746.
    • (2001) Mol. Cell. Biol , vol.21 , pp. 7731-7746
    • King, T.H.1    Decatur, W.A.2    Bertrand, E.3    Maxwell, E.S.4    Fournier, M.J.5
  • 54
    • 2942718696 scopus 로고    scopus 로고
    • Human box H/ACA pseudouridylation guide RNA machinery
    • Kiss, A. M., B. E. Jády, E. Bertrand, and T. Kiss. 2004. Human box H/ACA pseudouridylation guide RNA machinery. Mol. Cell. Biol. 24:5797-5807.
    • (2004) Mol. Cell. Biol , vol.24 , pp. 5797-5807
    • Kiss, A.M.1    Jády, B.E.2    Bertrand, E.3    Kiss, T.4
  • 55
    • 0029945504 scopus 로고    scopus 로고
    • Pseudouridine synthases: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases
    • Koonin, E. V. 1996. Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases. Nucleic Acids Res. 24:2411-2415.
    • (1996) Nucleic Acids Res , vol.24 , pp. 2411-2415
    • Koonin, E.V.1
  • 56
    • 33746631755 scopus 로고    scopus 로고
    • The transcriptional activity of RNA polymerase I is a key determinant for the level of all ribosome components
    • Laferté, A., E. Favry, A. Sentenac, M. Riva, C. Carles, and S. Chédin. 2006. The transcriptional activity of RNA polymerase I is a key determinant for the level of all ribosome components. Genes Dev. 20:2030-2040.
    • (2006) Genes Dev , vol.20 , pp. 2030-2040
    • Laferté, A.1    Favry, E.2    Sentenac, A.3    Riva, M.4    Carles, C.5    Chédin, S.6
  • 57
    • 0033931625 scopus 로고    scopus 로고
    • Transient nucleolar localization Of U6 small nuclear RNA in Xenopus laevis oocytes
    • Lange, T. S., and S. A. Gerbi. 2000. Transient nucleolar localization Of U6 small nuclear RNA in Xenopus laevis oocytes. Mol. Biol. Cell 11:2419-2428.
    • (2000) Mol. Biol. Cell , vol.11 , pp. 2419-2428
    • Lange, T.S.1    Gerbi, S.A.2
  • 58
    • 8844219672 scopus 로고    scopus 로고
    • 2922 in the ribosome catalytic center occurs at a late processing stage
    • 2922 in the ribosome catalytic center occurs at a late processing stage. Mol. Cell 16:663-669.
    • (2004) Mol. Cell , vol.16 , pp. 663-669
    • Lapeyre, B.1    Purushothaman, S.K.2
  • 59
    • 33644875300 scopus 로고    scopus 로고
    • snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
    • Lestrade, L., and M. J. Weber. 2006. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res. 34:D158-D62.
    • (2006) Nucleic Acids Res , vol.34
    • Lestrade, L.1    Weber, M.J.2
  • 60
    • 33748947672 scopus 로고    scopus 로고
    • Crystal structure of an H/ACA box ribonucleoprotein particle
    • Li, L., and K. Ye. 2006. Crystal structure of an H/ACA box ribonucleoprotein particle. Nature 443:302-307.
    • (2006) Nature , vol.443 , pp. 302-307
    • Li, L.1    Ye, K.2
  • 61
    • 0033582628 scopus 로고    scopus 로고
    • A computational screen for methylation guide snoRNAs in yeast
    • Lowe, T. M., and S. R. Eddy. 1999. A computational screen for methylation guide snoRNAs in yeast. Science 283:1168-1171.
    • (1999) Science , vol.283 , pp. 1168-1171
    • Lowe, T.M.1    Eddy, S.R.2
  • 62
    • 22744442531 scopus 로고    scopus 로고
    • Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism
    • Ma, X., C. Yang, A. Alexandrov, E. J. Grayhack, I. Behm-Ansmant, and Y.-T. Yu. 2005. Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism. EMBO J. 24:2403-2413.
    • (2005) EMBO J , vol.24 , pp. 2403-2413
    • Ma, X.1    Yang, C.2    Alexandrov, A.3    Grayhack, E.J.4    Behm-Ansmant, I.5    Yu, Y.-T.6
  • 63
    • 0037447130 scopus 로고    scopus 로고
    • Pseudouridylation (ψ) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism
    • Ma, X., X. Zhao, and Y.-T. Yu. 2003. Pseudouridylation (ψ) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism. EMBO J. 22:1889-1897.
    • (2003) EMBO J , vol.22 , pp. 1889-1897
    • Ma, X.1    Zhao, X.2    Yu, Y.-T.3
  • 64
    • 0019265986 scopus 로고
    • Nucleotide sequences of wheat-embryo cytosol 5-S and 5.8-S ribosomal ribonucleic acids
    • Mackay, R. M., D. F. Spencer, W. F. Doolittle, and M. W. Gray. 1980. Nucleotide sequences of wheat-embryo cytosol 5-S and 5.8-S ribosomal ribonucleic acids. Eur. J. Biochem. 112:561-576.
    • (1980) Eur. J. Biochem , vol.112 , pp. 561-576
    • Mackay, R.M.1    Spencer, D.F.2    Doolittle, W.F.3    Gray, M.W.4
  • 65
    • 0025580878 scopus 로고
    • The numerous modified nucleotides in eukaryotic ribosomal RNA
    • Maden, B. E. H. 1990. The numerous modified nucleotides in eukaryotic ribosomal RNA. Prog. Nucleic Acid Res. Mol. Biol. 39:241-303.
    • (1990) Prog. Nucleic Acid Res. Mol. Biol , vol.39 , pp. 241-303
    • Maden, B.E.H.1
  • 66
    • 33644867181 scopus 로고    scopus 로고
    • Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity
    • Manival, X., C. Charron, J.-B. Fourmann, F. Godard, B. Charpentier, and C. Branlant. 2006. Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity. Nucleic Acids Res. 34:826-839.
    • (2006) Nucleic Acids Res , vol.34 , pp. 826-839
    • Manival, X.1    Charron, C.2    Fourmann, J.-B.3    Godard, F.4    Charpentier, B.5    Branlant, C.6
  • 67
    • 33645895581 scopus 로고    scopus 로고
    • The RNA polymerase III-dependent family of genes in hemiascomycetes: Comparative RNomics, decoding strategies, transcription and evolutionary implications
    • Marck, C., R. Kachouri-Lafond, I. Lafontaine, E. Westhof, B. Dujon, and H. Grosjean. 2006. The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications. Nucleic Acids Res. 34:1816-1835.
    • (2006) Nucleic Acids Res , vol.34 , pp. 1816-1835
    • Marck, C.1    Kachouri-Lafond, R.2    Lafontaine, I.3    Westhof, E.4    Dujon, B.5    Grosjean, H.6
  • 68
    • 0033046012 scopus 로고    scopus 로고
    • Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase Pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA
    • Massenet, S., Y. Motorin, D. L. J. Lafontaine, E. C. Hurt, H. Grosjean, and C. Branlant. 1999. Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase Pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA. Mol. Cell. Biol. 19:2142-2154.
    • (1999) Mol. Cell. Biol , vol.19 , pp. 2142-2154
    • Massenet, S.1    Motorin, Y.2    Lafontaine, D.L.J.3    Hurt, E.C.4    Grosjean, H.5    Branlant, C.6
  • 69
    • 0242317680 scopus 로고    scopus 로고
    • Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics
    • McCutcheon, J. P., and S. R. Eddy. 2003. Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics. Nucleic Acids Res. 31:4119-4128.
    • (2003) Nucleic Acids Res , vol.31 , pp. 4119-4128
    • McCutcheon, J.P.1    Eddy, S.R.2
  • 70
    • 0023056832 scopus 로고
    • Translational regulation of expression of the bacteriophage T4 lysozyme gene
    • McPheeters, D. S., A. Christensen, E. T. Young, G. Stormo, and L. Gold. 1986. Translational regulation of expression of the bacteriophage T4 lysozyme gene. Nucleic Acids Res. 14:5813-5826.
    • (1986) Nucleic Acids Res , vol.14 , pp. 5813-5826
    • McPheeters, D.S.1    Christensen, A.2    Young, E.T.3    Stormo, G.4    Gold, L.5
  • 71
    • 19444374397 scopus 로고    scopus 로고
    • The many facets of H/ACA ribonucleoproteins
    • Meier, U. T. 2005. The many facets of H/ACA ribonucleoproteins. Chromosoma 114:1-14.
    • (2005) Chromosoma , vol.114 , pp. 1-14
    • Meier, U.T.1
  • 72
    • 0025267056 scopus 로고
    • Comparative analysis of 5.8 S rRNA from Ephedra kokanica Regl. (Gymnospermae) and other plant species
    • Melekhovets Y. F., and A. V. Troitsky. 1990. Comparative analysis of 5.8 S rRNA from Ephedra kokanica Regl. (Gymnospermae) and other plant species. Biochim. Biophys. Acta 1048:294-296.
    • (1990) Biochim. Biophys. Acta , vol.1048 , pp. 294-296
    • Melekhovets, Y.F.1    Troitsky, A.V.2
  • 73
    • 0034897729 scopus 로고    scopus 로고
    • Ribosomal protein L5 helps anchor peptidyl-tRNA to the P-site in Saccharomyces cerevisiae
    • Meskauskas, A., and J. D. Dinman. 2001. Ribosomal protein L5 helps anchor peptidyl-tRNA to the P-site in Saccharomyces cerevisiae. RNA 7:1084-1096.
    • (2001) RNA , vol.7 , pp. 1084-1096
    • Meskauskas, A.1    Dinman, J.D.2
  • 74
    • 33746611583 scopus 로고    scopus 로고
    • Does Pol I talk to Pol II? Coordination of RNA polymerases in ribosome biogenesis
    • Michels, A. A., and N. Hernandez. 2006. Does Pol I talk to Pol II? Coordination of RNA polymerases in ribosome biogenesis. Genes Dev. 20:1982-1985.
    • (2006) Genes Dev , vol.20 , pp. 1982-1985
    • Michels, A.A.1    Hernandez, N.2
  • 75
    • 0016218693 scopus 로고
    • Studies on the nucleotide sequence of pseudouridine-containing 5S RNA from Saccharomyces cerevisiae
    • Miyazaki, M. 1974. Studies on the nucleotide sequence of pseudouridine-containing 5S RNA from Saccharomyces cerevisiae. J. Biochem. 75:1407-1410.
    • (1974) J. Biochem , vol.75 , pp. 1407-1410
    • Miyazaki, M.1
  • 76
    • 0031870753 scopus 로고    scopus 로고
    • The yeast tRNA:pseudouridine synthase Pus1p displays a multisite substrate specificity
    • Motorin, Y., G. Keith, C. Simon, D. Foiret, G. Simos, E. Hurt, and H. Grosjean. 1998. The yeast tRNA:pseudouridine synthase Pus1p displays a multisite substrate specificity. RNA 4:856-869.
    • (1998) RNA , vol.4 , pp. 856-869
    • Motorin, Y.1    Keith, G.2    Simon, C.3    Foiret, D.4    Simos, G.5    Hurt, E.6    Grosjean, H.7
  • 77
    • 23844511660 scopus 로고    scopus 로고
    • Synergistic defect in 60S ribosomal subunit assembly caused by a mutation of Rrs1p, a ribosomal protein L11-binding protein, and 3′-extension of 5S rRNA in Saccharomyces cerevisiae
    • Nariai, M., T. Tanaka, T. Okada, C. Shirai, C. Horigome, and K. Mizuta. 2005. Synergistic defect in 60S ribosomal subunit assembly caused by a mutation of Rrs1p, a ribosomal protein L11-binding protein, and 3′-extension of 5S rRNA in Saccharomyces cerevisiae. Nucleic Acids Res. 33:4553-4562.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4553-4562
    • Nariai, M.1    Tanaka, T.2    Okada, T.3    Shirai, C.4    Horigome, C.5    Mizuta, K.6
  • 78
    • 0017257679 scopus 로고
    • Sequence homologies in mammalian 5.8S ribosomal RNA
    • Nazar, R. N., T. O. Sitz, and H. Busch. 1976. Sequence homologies in mammalian 5.8S ribosomal RNA. Biochemistry 15:505-508.
    • (1976) Biochemistry , vol.15 , pp. 505-508
    • Nazar, R.N.1    Sitz, T.O.2    Busch, H.3
  • 79
    • 0034975454 scopus 로고    scopus 로고
    • A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture
    • Newby, M. I., and N. L. Greenbaum. 2001. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. RNA 7:833-845.
    • (2001) RNA , vol.7 , pp. 833-845
    • Newby, M.I.1    Greenbaum, N.L.2
  • 80
    • 0036896469 scopus 로고    scopus 로고
    • Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine
    • Newby, M. I., and N. L. Greenbaum. 2002. Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine. Nat. Struct. Biol. 9:958-965.
    • (2002) Nat. Struct. Biol , vol.9 , pp. 958-965
    • Newby, M.I.1    Greenbaum, N.L.2
  • 81
    • 33749247285 scopus 로고    scopus 로고
    • Analysis of the binding of the N-terminal conserved domain of yeast Cbf5p to a box H/ACA snoRNA
    • Normand, C., R. Capeyrou, S. Quevillon-Cheruel, A. Mougin, Y. Henry, and M. Caizergues-Ferrer. 2006. Analysis of the binding of the N-terminal conserved domain of yeast Cbf5p to a box H/ACA snoRNA. RNA 12:1868-1882.
    • (2006) RNA , vol.12 , pp. 1868-1882
    • Normand, C.1    Capeyrou, R.2    Quevillon-Cheruel, S.3    Mougin, A.4    Henry, Y.5    Caizergues-Ferrer, M.6
  • 82
    • 0037029086 scopus 로고    scopus 로고
    • Ribosomal RNA pseudouridines and pseudouridine synthases
    • Ofengand, J. 2002. Ribosomal RNA pseudouridines and pseudouridine synthases. FEBS Lett. 514:17-25.
    • (2002) FEBS Lett , vol.514 , pp. 17-25
    • Ofengand, J.1
  • 83
    • 0031581856 scopus 로고    scopus 로고
    • Ofengand, J., and A. Bakin. 1997. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. J. Mol. Biol. 266:246-268.
    • Ofengand, J., and A. Bakin. 1997. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. J. Mol. Biol. 266:246-268.
  • 84
    • 0002387035 scopus 로고    scopus 로고
    • The pseudouridine residues of ribosomal RNA: Number, location, biosynthesis, and function
    • H. Grosjean and R. Benne ed, ASM Press, Washington, DC
    • Ofengand, J., and M. J. Fournier. 1998. The pseudouridine residues of ribosomal RNA: number, location, biosynthesis, and function, p. 229-253. In H. Grosjean and R. Benne (ed.), Modification and editing of RNA: the alteration of RNA structure and function. ASM Press, Washington, DC.
    • (1998) Modification and editing of RNA: The alteration of RNA structure and function , pp. 229-253
    • Ofengand, J.1    Fournier, M.J.2
  • 85
    • 0018459544 scopus 로고
    • Direct chemical method for sequencing RNA
    • Peattie, D. A. 1979. Direct chemical method for sequencing RNA. Proc. Natl. Acad. Sci. USA 76:1760-1764.
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 1760-1764
    • Peattie, D.A.1
  • 86
    • 33847270751 scopus 로고    scopus 로고
    • New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA
    • Piekna-Przybylska, D., W. A. Decatur, and M. J. Fournier. 2007. New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. RNA 13:305-312.
    • (2007) RNA , vol.13 , pp. 305-312
    • Piekna-Przybylska, D.1    Decatur, W.A.2    Fournier, M.J.3
  • 88
    • 30744445688 scopus 로고    scopus 로고
    • Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita
    • Rashid, R., B. Liang, D. L. Baker, O. A. Youssef, Y. He, K. Phipps, R. M. Terns, M. P. Terns, and H. Li. 2006. Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita. Mol. Cell 21:249-260.
    • (2006) Mol. Cell , vol.21 , pp. 249-260
    • Rashid, R.1    Liang, B.2    Baker, D.L.3    Youssef, O.A.4    He, Y.5    Phipps, K.6    Terns, R.M.7    Terns, M.P.8    Li, H.9
  • 89
    • 0024150216 scopus 로고
    • Evolutionary conservation of structure and function of high molecular weight ribosomal RNA
    • Raué, H. A., J. Klootwijk, and W. Musters. 1988. Evolutionary conservation of structure and function of high molecular weight ribosomal RNA. Prog. Biophys. Mol. Biol. 51:77-129.
    • (1988) Prog. Biophys. Mol. Biol , vol.51 , pp. 77-129
    • Raué, H.A.1    Klootwijk, J.2    Musters, W.3
  • 90
  • 91
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice, P., I. Longden, and A. Bleasby. 2000. EMBOSS: the European molecular biology open software suite. Trends Genet. 16:276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 92
    • 0042967786 scopus 로고    scopus 로고
    • A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs
    • Richard, P., X. Darzacq, E. Bertrand, B. E. Jády, C. Verheggen, and T. Kiss. 2003. A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs. EMBO J. 22:4283-4293.
    • (2003) EMBO J , vol.22 , pp. 4283-4293
    • Richard, P.1    Darzacq, X.2    Bertrand, E.3    Jády, B.E.4    Verheggen, C.5    Kiss, T.6
  • 94
    • 0015847983 scopus 로고
    • The nucleotide sequence of Saccharomyces cerevisiae 5.8 S ribosomal ribonucleic acid
    • Rubin, G. M. 1973. The nucleotide sequence of Saccharomyces cerevisiae 5.8 S ribosomal ribonucleic acid. J. Biol. Chem. 248:3860-3875.
    • (1973) J. Biol. Chem , vol.248 , pp. 3860-3875
    • Rubin, G.M.1
  • 95
    • 34347336512 scopus 로고    scopus 로고
    • Potential interface between ribosomal protein production and pre-rRNA processing
    • Rudra, D., J. Mallick, Y. Zhao, and J. R. Warner. 2007. Potential interface between ribosomal protein production and pre-rRNA processing. Mol. Cell. Biol. 27:4815-4824.
    • (2007) Mol. Cell. Biol , vol.27 , pp. 4815-4824
    • Rudra, D.1    Mallick, J.2    Zhao, Y.3    Warner, J.R.4
  • 96
    • 5444237797 scopus 로고    scopus 로고
    • What better measure than ribosome synthesis?
    • Rudra, D., and J. R. Warner. 2004. What better measure than ribosome synthesis? Genes Dev. 18:2431-2436.
    • (2004) Genes Dev , vol.18 , pp. 2431-2436
    • Rudra, D.1    Warner, J.R.2
  • 98
    • 3042523704 scopus 로고    scopus 로고
    • Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis
    • Russell, A. G., M. N. Schnare, and M. W. Gray. 2004. Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis. RNA 10:1034-1046.
    • (2004) RNA , vol.10 , pp. 1034-1046
    • Russell, A.G.1    Schnare, M.N.2    Gray, M.W.3
  • 99
    • 0032894591 scopus 로고    scopus 로고
    • A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae
    • Samarsky, D. A., and M. J. Fournier. 1999. A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Nucleic Acids Res. 27:161-164.
    • (1999) Nucleic Acids Res , vol.27 , pp. 161-164
    • Samarsky, D.A.1    Fournier, M.J.2
  • 100
    • 29844435528 scopus 로고    scopus 로고
    • A computational screen for mammalian pseudouridylation guide H/ACA RNAs
    • Schattner, P., S. Barberan-Soler, and T. M. Lowe. 2006. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. RNA 12:15-25.
    • (2006) RNA , vol.12 , pp. 15-25
    • Schattner, P.1    Barberan-Soler, S.2    Lowe, T.M.3
  • 101
    • 23144460836 scopus 로고    scopus 로고
    • The tRNAscan-SE, snoscan and snoGPS Web servers for the detection of tRNAs and snoRNAs
    • Schattner, P., A. N. Brooks, and T. M. Lowe. 2005. The tRNAscan-SE, snoscan and snoGPS Web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686-W689.
    • (2005) Nucleic Acids Res , vol.33
    • Schattner, P.1    Brooks, A.N.2    Lowe, T.M.3
  • 102
    • 4043120552 scopus 로고    scopus 로고
    • Genome-wide searching for pseudouridylation guide snoRNAs: Analysis of the Saccharomyces cerevisiae genome
    • Schattner, P., W. A. Decatur, C. A. Davis, M. Ares, Jr., M. J. Fournier, and T. M. Lowe. 2004. Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res. 32:4281-4296.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4281-4296
    • Schattner, P.1    Decatur, W.A.2    Davis, C.A.3    Ares Jr., M.4    Fournier, M.J.5    Lowe, T.M.6
  • 103
    • 0024669291 scopus 로고
    • A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
    • Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19-27.
    • (1989) Genetics , vol.122 , pp. 19-27
    • Sikorski, R.S.1    Hieter, P.2
  • 104
    • 13444288185 scopus 로고    scopus 로고
    • Compilation of tRNA sequences and sequences of tRNA genes
    • Sprinzl, M., and K. S. Vassilenko. 2005. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res. 33:D139-D140.
    • (2005) Nucleic Acids Res , vol.33
    • Sprinzl, M.1    Vassilenko, K.S.2
  • 106
    • 0344012605 scopus 로고    scopus 로고
    • Nucleolar clustering of dispersed tRNA genes
    • Thompson, M., R. A. Haeusler, P. D. Good, and D. R. Engelke. 2003. Nucleolar clustering of dispersed tRNA genes. Science 302:1399-1401.
    • (2003) Science , vol.302 , pp. 1399-1401
    • Thompson, M.1    Haeusler, R.A.2    Good, P.D.3    Engelke, D.R.4
  • 107
    • 21844473540 scopus 로고    scopus 로고
    • The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae
    • Torchet, C., G. Badis, F. Devaux, G. Costanzo, M. Werner, and A. Jacquier. 2005. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11:928-938.
    • (2005) RNA , vol.11 , pp. 928-938
    • Torchet, C.1    Badis, G.2    Devaux, F.3    Costanzo, G.4    Werner, M.5    Jacquier, A.6
  • 109
    • 33645744221 scopus 로고    scopus 로고
    • The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes
    • Wade, C. H., M. A. Umbarger, and M. A. McAlear. 2006. The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes. Ycast 23:293-306.
    • (2006) Ycast , vol.23 , pp. 293-306
    • Wade, C.H.1    Umbarger, M.A.2    McAlear, M.A.3
  • 111
    • 14544303670 scopus 로고    scopus 로고
    • Recognition of the spliceosomal branch site RNA helix on the basis of surface and electrostatic features
    • Xu, D., N. L. Greenbaum, and M. O. Fenley. 2005. Recognition of the spliceosomal branch site RNA helix on the basis of surface and electrostatic features. Nucleic Acids Res. 33:1154-1161.
    • (2005) Nucleic Acids Res , vol.33 , pp. 1154-1161
    • Xu, D.1    Greenbaum, N.L.2    Fenley, M.O.3
  • 112
    • 33646543044 scopus 로고    scopus 로고
    • Impaired control of IRES-mediated translation in X-linked dyskeratosis congenita
    • Yoon, A., G. Peng, Y. Brandenburger, O. Zollo, W. Xu, E. Rego, and D. Ruggero. 2006. Impaired control of IRES-mediated translation in X-linked dyskeratosis congenita. Science 312:902-906.
    • (2006) Science , vol.312 , pp. 902-906
    • Yoon, A.1    Peng, G.2    Brandenburger, Y.3    Zollo, O.4    Xu, W.5    Rego, E.6    Ruggero, D.7
  • 113
    • 0035911956 scopus 로고    scopus 로고
    • Internal modification of U2 small nuclear (sn)RNA occurs in nucleoli of Xenopus oocytes
    • Yu, Y.-T., M. D. Shu, A. Narayanan, R. M. Terns, M. P. Terns, and J. A. Steitz. 2001. Internal modification of U2 small nuclear (sn)RNA occurs in nucleoli of Xenopus oocytes. J. Cell Biol. 152:1279-1288.
    • (2001) J. Cell Biol , vol.152 , pp. 1279-1288
    • Yu, Y.-T.1    Shu, M.D.2    Narayanan, A.3    Terns, R.M.4    Terns, M.P.5    Steitz, J.A.6
  • 114
    • 43249107085 scopus 로고    scopus 로고
    • Yu, Y.-T., R. M. Terns, and M. P. Terns. 2005. Mechanisms and functions of RNA-guided RNA modification. Top. Curr. Genet. 12:223-262.
    • Yu, Y.-T., R. M. Terns, and M. P. Terns. 2005. Mechanisms and functions of RNA-guided RNA modification. Top. Curr. Genet. 12:223-262.
  • 115
    • 0032718276 scopus 로고    scopus 로고
    • Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA
    • Zebarjadian, Y., T. King, M. J. Fournier, L. Clarke, and J. Carbon. 1999. Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA. Mol. Cell. Biol. 19:7461-7472.
    • (1999) Mol. Cell. Biol , vol.19 , pp. 7461-7472
    • Zebarjadian, Y.1    King, T.2    Fournier, M.J.3    Clarke, L.4    Carbon, J.5
  • 116
    • 0042121256 scopus 로고    scopus 로고
    • Mfold Web server for nucleic acid folding and hybridization prediction
    • Zuker, M. 2003. Mfold Web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.