-
1
-
-
0033046425
-
Novel predicted RNA-binding domains associated with the translation machinery
-
L. Aravind, and E.V. Koonin Novel predicted RNA-binding domains associated with the translation machinery J. Mol. Evol. 48 1999 291 302
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 291-302
-
-
Aravind, L.1
Koonin, E.V.2
-
2
-
-
0028239805
-
Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure
-
J.G. Arnez, and T.A. Steitz Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure Biochemistry 33 1994 7560 7567
-
(1994)
Biochemistry
, vol.33
, pp. 7560-7567
-
-
Arnez, J.G.1
Steitz, T.A.2
-
3
-
-
0035690880
-
Zinc coordination sphere in biochemical zinc sites
-
D.S. Auld Zinc coordination sphere in biochemical zinc sites Biometals 14 2001 217 313
-
(2001)
Biometals
, vol.14
, pp. 217-313
-
-
Auld, D.S.1
-
4
-
-
18844397555
-
RNA-guided RNA modification: Functional organization of the archaeal H/ACA RNP
-
D.L. Baker, O.A. Youssef, M.I. Chastkofsky, D.A. Dy, R.M. Terns, and M.P. Terns RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP Genes Dev. 19 2005 1238 1248
-
(2005)
Genes Dev.
, vol.19
, pp. 1238-1248
-
-
Baker, D.L.1
Youssef, O.A.2
Chastkofsky, M.I.3
Dy, D.A.4
Terns, R.M.5
Terns, M.P.6
-
5
-
-
0030572699
-
The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions
-
A.G. Balakin, L. Smith, and M.J. Fournier The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions Cell 86 1996 823 834
-
(1996)
Cell
, vol.86
, pp. 823-834
-
-
Balakin, A.G.1
Smith, L.2
Fournier, M.J.3
-
6
-
-
14544277627
-
Telomeres and telomerase: Their mechanisms of action and the effects of altering their functions
-
E.H. Blackburn Telomeres and telomerase: their mechanisms of action and the effects of altering their functions FEBS Lett. 579 2005 859 862
-
(2005)
FEBS Lett.
, vol.579
, pp. 859-862
-
-
Blackburn, E.H.1
-
7
-
-
0030837031
-
A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs
-
C. Bousquet-Antonelli, Y. Henry, J.P. G' elugne, M. Caizergues-Ferrer, and T. Kiss A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs EMBO J. 16 1997 4770 4776
-
(1997)
EMBO J.
, vol.16
, pp. 4770-4776
-
-
Bousquet-Antonelli, C.1
Henry, Y.2
Elugne, J.P.G.'.3
Caizergues-Ferrer, M.4
Kiss, T.5
-
8
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
A.T. Brunger, P.D. Adams, G.M. Clore, W.L. DeLano, P. Gros, R.W. Grosse-Kunstleve, J.S. Jiang, J. Kuszewski, M. Nilges, and N.S. Pannu Crystallography & NMR system: A new software suite for macromolecular structure determination Acta Crystallogr. D Biol. Crystallogr. 54 1998 905 921
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
9
-
-
0033935223
-
Pseudouridine in RNA: What, where, how, and why
-
M. Charette, and M.W. Gray Pseudouridine in RNA: what, where, how, and why IUBMB Life 49 2000 341 351
-
(2000)
IUBMB Life
, vol.49
, pp. 341-351
-
-
Charette, M.1
Gray, M.W.2
-
10
-
-
20144374350
-
Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation
-
B. Charpentier, S. Muller, and C. Branlant Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation Nucleic Acids Res. 33 2005 3133 3144
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 3133-3144
-
-
Charpentier, B.1
Muller, S.2
Branlant, C.3
-
11
-
-
1842813934
-
Telomerase RNA structure and function: Implications for dyskeratosis congenita
-
J.L. Chen, and C.W. Greider Telomerase RNA structure and function: implications for dyskeratosis congenita Trends Biochem. Sci. 29 2004 183 192
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 183-192
-
-
Chen, J.L.1
Greider, C.W.2
-
12
-
-
0029566314
-
Stabilization of RNA stacking by pseudouridine
-
D.R. Davis Stabilization of RNA stacking by pseudouridine Nucleic Acids Res. 23 1995 5020 5026
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 5020-5026
-
-
Davis, D.R.1
-
13
-
-
0037428520
-
RNA-guided nucleotide modification of ribosomal and other RNAs
-
W.A. Decatur, and M.J. Fournier RNA-guided nucleotide modification of ribosomal and other RNAs J. Biol. Chem. 278 2003 695 698
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 695-698
-
-
Decatur, W.A.1
Fournier, M.J.2
-
14
-
-
1642580818
-
Crystal structure of the catalytic domain of RluD, the only rRNA pseudouridine synthase required for normal growth of Escherichia coli
-
M. del Campo, J. Ofengand, and A. Malhotra Crystal structure of the catalytic domain of RluD, the only rRNA pseudouridine synthase required for normal growth of Escherichia coli RNA 10 2004 231 239
-
(2004)
RNA
, vol.10
, pp. 231-239
-
-
Del Campo, M.1
Ofengand, J.2
Malhotra, A.3
-
15
-
-
9344271506
-
Modified nucleotides at the 5′ end of human U2 snRNA are required for spliceosomal E-complex formation
-
G. Donmez, K. Hartmuth, and R. Luhrmann Modified nucleotides at the 5′ end of human U2 snRNA are required for spliceosomal E-complex formation RNA 10 2004 1925 1933
-
(2004)
RNA
, vol.10
, pp. 1925-1933
-
-
Donmez, G.1
Hartmuth, K.2
Luhrmann, R.3
-
16
-
-
0343183144
-
In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs
-
F. Dragon, V. Pogacic, and W. Filipowicz In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs Mol. Cell. Biol. 20 2000 3037 3048
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 3037-3048
-
-
Dragon, F.1
Pogacic, V.2
Filipowicz, W.3
-
17
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
H.J. Dyson, and P.E. Wright Intrinsically unstructured proteins and their functions Nat. Rev. Mol. Cell Biol. 6 2005 197 208
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
18
-
-
0036916733
-
Naf1 p is a box H/ACA snoRNP assembly factor
-
A. Fatica, M. Dlakic, and D. Tollervey Naf1 p is a box H/ACA snoRNP assembly factor RNA 8 2002 1502 1514
-
(2002)
RNA
, vol.8
, pp. 1502-1514
-
-
Fatica, A.1
Dlakic, M.2
Tollervey, D.3
-
19
-
-
0033987499
-
The structural basis for tRNA recognition and pseudouridine formation by pseudouridine synthase I
-
P.G. Foster, L. Huang, D.V. Santi, and R.M. Stroud The structural basis for tRNA recognition and pseudouridine formation by pseudouridine synthase I Nat. Struct. Biol. 7 2000 23 27
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 23-27
-
-
Foster, P.G.1
Huang, L.2
Santi, D.V.3
Stroud, R.M.4
-
20
-
-
0030711050
-
Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
-
P. Ganot, M.L. Bortolin, and T. Kiss Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs Cell 89 1997 799 809
-
(1997)
Cell
, vol.89
, pp. 799-809
-
-
Ganot, P.1
Bortolin, M.L.2
Kiss, T.3
-
21
-
-
0031003901
-
The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation
-
P. Ganot, M. Caizergues-Ferrer, and T. Kiss The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation Genes Dev. 11 1997 941 956
-
(1997)
Genes Dev.
, vol.11
, pp. 941-956
-
-
Ganot, P.1
Caizergues-Ferrer, M.2
Kiss, T.3
-
22
-
-
0026583945
-
GAR1 is an essential small nucleolar RNP protein required for pre-rRNA processing in yeast
-
J.P. Girard, H. Lehtonen, M. Caizergues-Ferrer, F. Amalric, D. Tollervey, and B. Lapeyre GAR1 is an essential small nucleolar RNP protein required for pre-rRNA processing in yeast EMBO J. 11 1992 673 682
-
(1992)
EMBO J.
, vol.11
, pp. 673-682
-
-
Girard, J.P.1
Lehtonen, H.2
Caizergues-Ferrer, M.3
Amalric, F.4
Tollervey, D.5
Lapeyre, B.6
-
23
-
-
0025081851
-
Crystal structures of aspartate carbamoyltransferase ligated with phosphonoacetamide, malonate, and CTP or ATP at 2.8-A resolution and neutral pH
-
J.E. Gouaux, R.C. Stevens, and W.N. Lipscomb Crystal structures of aspartate carbamoyltransferase ligated with phosphonoacetamide, malonate, and CTP or ATP at 2.8-A resolution and neutral pH Biochemistry 29 1990 7702 7715
-
(1990)
Biochemistry
, vol.29
, pp. 7702-7715
-
-
Gouaux, J.E.1
Stevens, R.C.2
Lipscomb, W.N.3
-
25
-
-
0034547125
-
Deletion of the Escherichia coli pseudouridine synthase gene truB blocks formation of pseudouridine 55 in tRNA in vivo, does not affect exponential growth, but confers a strong selective disadvantage in competition with wild-type cells
-
N. Gutgsell, N. Englund, L. Niu, Y. Kaya, B.G. Lane, and J. Ofengand Deletion of the Escherichia coli pseudouridine synthase gene truB blocks formation of pseudouridine 55 in tRNA in vivo, does not affect exponential growth, but confers a strong selective disadvantage in competition with wild-type cells RNA 6 2000 1870 1881
-
(2000)
RNA
, vol.6
, pp. 1870-1881
-
-
Gutgsell, N.1
Englund, N.2
Niu, L.3
Kaya, Y.4
Lane, B.G.5
Ofengand, J.6
-
26
-
-
9744262505
-
The roles of the essential Asp-48 and highly conserved His-43 elucidated by the pH dependence of the pseudouridine synthase TruB
-
C.S. Hamilton, C.J. Spedaliere, J.M. Ginter, M.V. Johnston, and E.G. Mueller The roles of the essential Asp-48 and highly conserved His-43 elucidated by the pH dependence of the pseudouridine synthase TruB Arch. Biochem. Biophys. 433 2005 322 334
-
(2005)
Arch. Biochem. Biophys.
, vol.433
, pp. 322-334
-
-
Hamilton, C.S.1
Spedaliere, C.J.2
Ginter, J.M.3
Johnston, M.V.4
Mueller, E.G.5
-
27
-
-
2342638215
-
Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 a resolution
-
T. Hamma, and A.R. Ferre-D' Amare Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 A resolution Structure (Camb) 12 2004 893 903
-
(2004)
Structure (Camb)
, vol.12
, pp. 893-903
-
-
Hamma, T.1
Ferre-D Amare, A.R.2
-
28
-
-
0031799895
-
X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions
-
N.S. Heiss, S.W. Knight, T.J. Vulliamy, S.M. Klauck, S. Wiemann, P.J. Mason, A. Poustka, and I. Dokal X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions Nat. Genet. 19 1998 32 38
-
(1998)
Nat. Genet.
, vol.19
, pp. 32-38
-
-
Heiss, N.S.1
Knight, S.W.2
Vulliamy, T.J.3
Klauck, S.M.4
Wiemann, S.5
Mason, P.J.6
Poustka, A.7
Dokal, I.8
-
29
-
-
0032401740
-
Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs
-
A. Henras, Y. Henry, C. Bousquet-Antonelli, J. Noaillac-Depeyre, J.P. Gelugne, and M. Caizergues-Ferrer Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs EMBO J. 17 1998 7078 7090
-
(1998)
EMBO J.
, vol.17
, pp. 7078-7090
-
-
Henras, A.1
Henry, Y.2
Bousquet-Antonelli, C.3
Noaillac-Depeyre, J.4
Gelugne, J.P.5
Caizergues-Ferrer, M.6
-
30
-
-
0035394728
-
Accumulation of H/ACA snoRNPs depends on the integrity of the conserved central domain of the RNA-binding protein Nhp2p
-
A. Henras, C. Dez, J. Noaillac-Depeyre, Y. Henry, and M. Caizergues-Ferrer Accumulation of H/ACA snoRNPs depends on the integrity of the conserved central domain of the RNA-binding protein Nhp2p Nucleic Acids Res. 29 2001 2733 2746
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2733-2746
-
-
Henras, A.1
Dez, C.2
Noaillac-Depeyre, J.3
Henry, Y.4
Caizergues-Ferrer, M.5
-
31
-
-
7044285916
-
Cbf5p, the putative pseudouridine synthase of H/ACA-type snoRNPs, can form a complex with Gar1p and Nop10p in absence of Nhp2p and box H/ACA snoRNAs
-
A.K. Henras, R. Capeyrou, Y. Henry, and M. Caizergues-Ferrer Cbf5p, the putative pseudouridine synthase of H/ACA-type snoRNPs, can form a complex with Gar1p and Nop10p in absence of Nhp2p and box H/ACA snoRNAs RNA 10 2004 1704 1712
-
(2004)
RNA
, vol.10
, pp. 1704-1712
-
-
Henras, A.K.1
Capeyrou, R.2
Henry, Y.3
Caizergues-Ferrer, M.4
-
32
-
-
0035966271
-
Cocrystal structure of a tRNA Psi55 pseudouridine synthase: Nucleotide flipping by an RNA-modifying enzyme
-
C. Hoang, and A.R. Ferre-D' Amare Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme Cell 107 2001 929 939
-
(2001)
Cell
, vol.107
, pp. 929-939
-
-
Hoang, C.1
Ferre-D Amare, A.R.2
-
33
-
-
3042618760
-
Crystal structure of the highly divergent pseudouridine synthase TruD reveals a circular permutation of a conserved fold
-
C. Hoang, and A.R. Ferre-D' Amare Crystal structure of the highly divergent pseudouridine synthase TruD reveals a circular permutation of a conserved fold RNA 10 2004 1026 1033
-
(2004)
RNA
, vol.10
, pp. 1026-1033
-
-
Hoang, C.1
Ferre-D Amare, A.R.2
-
34
-
-
0038613099
-
Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme
-
R. Ishitani, O. Nureki, N. Nameki, N. Okada, S. Nishimura, and S. Yokoyama Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme Cell 113 2003 383 394
-
(2003)
Cell
, vol.113
, pp. 383-394
-
-
Ishitani, R.1
Nureki, O.2
Nameki, N.3
Okada, N.4
Nishimura, S.5
Yokoyama, S.6
-
35
-
-
84889120137
-
Improved methods for binding protein models in electron density maps and the location of errors in these models
-
T.A. Jones, J.Y. Zou, S.W. Cowan, and M. Kjeldgaard Improved methods for binding protein models in electron density maps and the location of errors in these models Acta Crystallogr. A 47 1991 110 119
-
(1991)
Acta Crystallogr. a
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
36
-
-
2442450595
-
Crystal structure of TruD, a novel pseudouridine synthase with a new protein fold
-
Y. Kaya, M. Del Campo, J. Ofengand, and A. Malhotra Crystal structure of TruD, a novel pseudouridine synthase with a new protein fold J. Biol. Chem. 279 2004 18107 18110
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 18107-18110
-
-
Kaya, Y.1
Del Campo, M.2
Ofengand, J.3
Malhotra, A.4
-
37
-
-
0037292453
-
Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center
-
T.H. King, B. Liu, R.R. McCully, and M.J. Fournier Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center Mol. Cell 11 2003 425 435
-
(2003)
Mol. Cell
, vol.11
, pp. 425-435
-
-
King, T.H.1
Liu, B.2
McCully, R.R.3
Fournier, M.J.4
-
38
-
-
0037133942
-
Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
-
T. Kiss Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions Cell 109 2002 145 148
-
(2002)
Cell
, vol.109
, pp. 145-148
-
-
Kiss, T.1
-
39
-
-
0029945504
-
Pseudouridine synthases: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases
-
E.V. Koonin Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases Nucleic Acids Res. 24 1996 2411 2415
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2411-2415
-
-
Koonin, E.V.1
-
40
-
-
0028225137
-
A novel RNA-binding motif in omnipotent suppressors of translation termination, ribosomal proteins and a ribosome modification enzyme?
-
E.V. Koonin, P. Bork, and C. Sander A novel RNA-binding motif in omnipotent suppressors of translation termination, ribosomal proteins and a ribosome modification enzyme? Nucleic Acids Res. 22 1994 2166 2167
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2166-2167
-
-
Koonin, E.V.1
Bork, P.2
Sander, C.3
-
41
-
-
0032520182
-
The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase
-
D. Lafontaine, C. Bousquet-Antonelli, Y. Henry, M. Caizergues-Ferrer, and D. Tollervey The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase Genes Dev. 12 1998 527 537
-
(1998)
Genes Dev.
, vol.12
, pp. 527-537
-
-
Lafontaine, D.1
Bousquet-Antonelli, C.2
Henry, Y.3
Caizergues-Ferrer, M.4
Tollervey, D.5
-
42
-
-
0035670851
-
The snoRNA domain of vertebrate telomerase RNA functions to localize the RNA within the nucleus
-
A.A. Lukowiak, A. Narayanan, Z.H. Li, R.M. Terns, and M.P. Terns The snoRNA domain of vertebrate telomerase RNA functions to localize the RNA within the nucleus RNA 7 2001 1833 1844
-
(2001)
RNA
, vol.7
, pp. 1833-1844
-
-
Lukowiak, A.A.1
Narayanan, A.2
Li, Z.H.3
Terns, R.M.4
Terns, M.P.5
-
44
-
-
19444383162
-
Dyskeratosis congenita: Telomerase, telomerases and anticipation
-
A. Marrone, A. Walne, and I. Dokal Dyskeratosis congenita: telomerase, telomerases and anticipation Curr. Opin. Genet. Dev. 15 2005 249 257
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, pp. 249-257
-
-
Marrone, A.1
Walne, A.2
Dokal, I.3
-
45
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
M.A. Marti-Renom, A.C. Stuart, A. Fiser, R. Sanchez, F. Melo, and A. Sali Comparative protein structure modeling of genes and genomes Annu. Rev. Biophys. Biomol. Struct. 29 2000 291 325
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
Stuart, A.C.2
Fiser, A.3
Sanchez, R.4
Melo, F.5
Sali, A.6
-
46
-
-
18044373421
-
Dyskeratosis congenita-a disease of dysfunctional telomere maintenance
-
P.J. Mason, D.B. Wilson, and M. Bessler Dyskeratosis congenita-a disease of dysfunctional telomere maintenance Curr. Mol. Med. 5 2005 159 170
-
(2005)
Curr. Mol. Med.
, vol.5
, pp. 159-170
-
-
Mason, P.J.1
Wilson, D.B.2
Bessler, M.3
-
47
-
-
0037315641
-
Dissecting dyskeratosis
-
U.T. Meier Dissecting dyskeratosis Nat. Genet. 33 2003 116 117
-
(2003)
Nat. Genet.
, vol.33
, pp. 116-117
-
-
Meier, U.T.1
-
48
-
-
19444374397
-
The many facets of H/ACA ribonucleoproteins
-
U.T. Meier The many facets of H/ACA ribonucleoproteins Chromosoma 114 2005 1 14
-
(2005)
Chromosoma
, vol.114
, pp. 1-14
-
-
Meier, U.T.1
-
49
-
-
0032961170
-
A box H/ACA small nucleolar RNA-like domain at the human telomerase RNA 3′ end
-
J.R. Mitchell, J. Cheng, and K. Collins A box H/ACA small nucleolar RNA-like domain at the human telomerase RNA 3′ end Mol. Cell. Biol. 19 1999 567 576
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 567-576
-
-
Mitchell, J.R.1
Cheng, J.2
Collins, K.3
-
50
-
-
0033518188
-
A telomerase component is defective in the human disease dyskeratosis congenita
-
J.R. Mitchell, E. Wood, and K. Collins A telomerase component is defective in the human disease dyskeratosis congenita Nature 402 1999 551 555
-
(1999)
Nature
, vol.402
, pp. 551-555
-
-
Mitchell, J.R.1
Wood, E.2
Collins, K.3
-
51
-
-
3242656131
-
Mouse dyskerin mutations affect accumulation of telomerase RNA and small nucleolar RNA, telomerase activity, and ribosomal RNA processing
-
Y. Mochizuki, J. He, S. Kulkarni, M. Bessler, and P.J. Mason Mouse dyskerin mutations affect accumulation of telomerase RNA and small nucleolar RNA, telomerase activity, and ribosomal RNA processing Proc. Natl. Acad. Sci. USA 101 2004 10756 10761
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10756-10761
-
-
Mochizuki, Y.1
He, J.2
Kulkarni, S.3
Bessler, M.4
Mason, P.J.5
-
52
-
-
2342475659
-
Molecular basis of box C/D RNA-protein interactions; Cocrystal structure of archaeal L7Ae and a box C/D RNA
-
T. Moore, Y. Zhang, M.O. Fenley, and H. Li Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA Structure (Camb) 12 2004 807 818
-
(2004)
Structure (Camb)
, vol.12
, pp. 807-818
-
-
Moore, T.1
Zhang, Y.2
Fenley, M.O.3
Li, H.4
-
53
-
-
0036789890
-
Investigation of Overhauser effects between pseudouridine and water protons in RNA helices
-
M.I. Newby, and N.L. Greenbaum Investigation of Overhauser effects between pseudouridine and water protons in RNA helices Proc. Natl. Acad. Sci. USA 99 2002 12697 12702
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12697-12702
-
-
Newby, M.I.1
Greenbaum, N.L.2
-
54
-
-
0036896469
-
Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine
-
M.I. Newby, and N.L. Greenbaum Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine Nat. Struct. Biol. 9 2002 958 965
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 958-965
-
-
Newby, M.I.1
Greenbaum, N.L.2
-
55
-
-
0030771087
-
Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA
-
J. Ni, A.L. Tien, and M.J. Fournier Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA Cell 89 1997 565 573
-
(1997)
Cell
, vol.89
, pp. 565-573
-
-
Ni, J.1
Tien, A.L.2
Fournier, M.J.3
-
56
-
-
0242331664
-
Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit
-
H. Pan, S. Agarwalla, D.T. Moustakas, J. Finer-Moore, and R.M. Stroud Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit Proc. Natl. Acad. Sci. USA 100 2003 12648 12653
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12648-12653
-
-
Pan, H.1
Agarwalla, S.2
Moustakas, D.T.3
Finer-Moore, J.4
Stroud, R.M.5
-
57
-
-
0034459569
-
Human H/ACA small nucleolar RNPs and telomerase share evolutionarily conserved proteins NHP2 and NOP10
-
V. Pogacic, F. Dragon, and W. Filipowicz Human H/ACA small nucleolar RNPs and telomerase share evolutionarily conserved proteins NHP2 and NOP10 Mol. Cell. Biol. 20 2000 9028 9040
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 9028-9040
-
-
Pogacic, V.1
Dragon, F.2
Filipowicz, W.3
-
58
-
-
0031045818
-
Treatment of multiwavelength anomalous diffraction data as a special case of multiple isomorphous replacement
-
V. Ramakrishnan, and V. Biou Treatment of multiwavelength anomalous diffraction data as a special case of multiple isomorphous replacement Methods Enzymol. 276 1997 538 557
-
(1997)
Methods Enzymol.
, vol.276
, pp. 538-557
-
-
Ramakrishnan, V.1
Biou, V.2
-
59
-
-
0037324527
-
Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea
-
T.S. Rozhdestvensky, T.H. Tang, I.V. Tchirkova, J. Brosius, J.P. Bachellerie, and A. Huttenhofer Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea Nucleic Acids Res. 31 2003 869 877
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 869-877
-
-
Rozhdestvensky, T.S.1
Tang, T.H.2
Tchirkova, I.V.3
Brosius, J.4
Bachellerie, J.P.5
Huttenhofer, A.6
-
60
-
-
0037428129
-
Dyskeratosis congenita and cancer in mice deficient in ribosomal RNA modification
-
D. Ruggero, S. Grisendi, F. Piazza, E. Rego, F. Mari, P.H. Rao, C. Cordon-Cardo, and P.P. Pandolfi Dyskeratosis congenita and cancer in mice deficient in ribosomal RNA modification Science 299 2003 259 262
-
(2003)
Science
, vol.299
, pp. 259-262
-
-
Ruggero, D.1
Grisendi, S.2
Piazza, F.3
Rego, E.4
Mari, F.5
Rao, P.H.6
Cordon-Cardo, C.7
Pandolfi, P.P.8
-
61
-
-
0029073091
-
The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
-
W.G. Scott, J.T. Finch, and A. Klug The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage Cell 81 1995 991 1002
-
(1995)
Cell
, vol.81
, pp. 991-1002
-
-
Scott, W.G.1
Finch, J.T.2
Klug, A.3
-
62
-
-
0036242421
-
Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP
-
J. Sivaraman, V. Sauve, R. Larocque, E.A. Stura, J.D. Schrag, M. Cygler, and A. Matte Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP Nat. Struct. Biol. 9 2002 353 358
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 353-358
-
-
Sivaraman, J.1
Sauve, V.2
Larocque, R.3
Stura, E.A.4
Schrag, J.D.5
Cygler, M.6
Matte, A.7
-
63
-
-
22244460838
-
The Crystal structure of the Methanocaldococcus jannaschii multifunctional L7Ae RNA-binding protein reveals an induced-fit interaction with the box C/D RNAs
-
J. Suryadi, E.J. Tran, E.S. Maxwell, and B.A. Brown 2nd The Crystal structure of the Methanocaldococcus jannaschii multifunctional L7Ae RNA-binding protein reveals an induced-fit interaction with the box C/D RNAs Biochemistry 44 2005 9657 9672
-
(2005)
Biochemistry
, vol.44
, pp. 9657-9672
-
-
Suryadi, J.1
Tran, E.J.2
Maxwell, E.S.3
Brown II, B.A.4
-
64
-
-
0037188531
-
Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus
-
T.H. Tang, J.P. Bachellerie, T. Rozhdestvensky, M.L. Bortolin, H. Huber, M. Drungowski, T. Elge, J. Brosius, and A. Huttenhofer Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus Proc. Natl. Acad. Sci. USA 99 2002 7536 7541
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 7536-7541
-
-
Tang, T.H.1
Bachellerie, J.P.2
Rozhdestvensky, T.3
Bortolin, M.L.4
Huber, H.5
Drungowski, M.6
Elge, T.7
Brosius, J.8
Huttenhofer, A.9
-
65
-
-
0036176517
-
Small nucleolar RNAs: Versatile trans-acting molecules of ancient evolutionary origin
-
M.P. Terns, and R.M. Terns Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin Gene Expr. 10 2002 17 39
-
(2002)
Gene Expr.
, vol.10
, pp. 17-39
-
-
Terns, M.P.1
Terns, R.M.2
-
67
-
-
22244483207
-
Induced fit of RNA on binding the L7Ae protein to the kink-turn motif
-
B. Turner, S.E. Melcher, T.J. Wilson, D.G. Norman, and D.M. Lilley Induced fit of RNA on binding the L7Ae protein to the kink-turn motif RNA 11 2005 1192 1200
-
(2005)
RNA
, vol.11
, pp. 1192-1200
-
-
Turner, B.1
Melcher, S.E.2
Wilson, T.J.3
Norman, D.G.4
Lilley, D.M.5
-
68
-
-
0038719932
-
Characterization of the catalytic activity of U2 and U6 snRNAs
-
S. Valadkhan, and J.L. Manley Characterization of the catalytic activity of U2 and U6 snRNAs RNA 9 2003 892 904
-
(2003)
RNA
, vol.9
, pp. 892-904
-
-
Valadkhan, S.1
Manley, J.L.2
-
69
-
-
2442542173
-
Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins
-
C. Wang, and U.T. Meier Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins EMBO J. 23 2004 1857 1867
-
(2004)
EMBO J.
, vol.23
, pp. 1857-1867
-
-
Wang, C.1
Meier, U.T.2
-
70
-
-
0034659940
-
Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: Cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria
-
Y. Watanabe, and M.W. Gray Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria Nucleic Acids Res. 28 2000 2342 2352
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 2342-2352
-
-
Watanabe, Y.1
Gray, M.W.2
-
71
-
-
0031788801
-
Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure
-
N.J. Watkins, A. Gottschalk, G. Neubauer, B. Kastner, P. Fabrizio, M. Mann, and R. Luhrmann Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure RNA 4 1998 1549 1568
-
(1998)
RNA
, vol.4
, pp. 1549-1568
-
-
Watkins, N.J.1
Gottschalk, A.2
Neubauer, G.3
Kastner, B.4
Fabrizio, P.5
Mann, M.6
Luhrmann, R.7
-
72
-
-
14844327762
-
Psi35 in the branch site recognition region of U2 small nuclear RNA is important for pre-mRNA splicing in Saccharomyces cerevisiae
-
C. Yang, D.S. McPheeters, and Y.T. Yu Psi35 in the branch site recognition region of U2 small nuclear RNA is important for pre-mRNA splicing in Saccharomyces cerevisiae J. Biol. Chem. 280 2005 6655 6662
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 6655-6662
-
-
Yang, C.1
McPheeters, D.S.2
Yu, Y.T.3
-
73
-
-
0037159511
-
The Shq1p.Naf1p complex is required for box H/ACA small nucleolar ribonucleoprotein particle biogenesis
-
P.K. Yang, G. Rotondo, T. Porras, P. Legrain, and G. Chanfreau The Shq1p.Naf1p complex is required for box H/ACA small nucleolar ribonucleoprotein particle biogenesis J. Biol. Chem. 277 2002 45235 45242
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 45235-45242
-
-
Yang, P.K.1
Rotondo, G.2
Porras, T.3
Legrain, P.4
Chanfreau, G.5
-
74
-
-
16244366466
-
Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly
-
P.K. Yang, C. Hoareau, C. Froment, B. Monsarrat, Y. Henry, and G. Chanfreau Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly Mol. Cell. Biol. 25 2005 3295 3304
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 3295-3304
-
-
Yang, P.K.1
Hoareau, C.2
Froment, C.3
Monsarrat, B.4
Henry, Y.5
Chanfreau, G.6
-
75
-
-
0033199501
-
Structural and functional roles of the N1- and N3-protons of psi at tRNA' s position 39
-
C.S. Yarian, M.M. Basti, R.J. Cain, G. Ansari, R.H. Guenther, E. Sochacka, G. Czerwinska, A. Malkiewicz, and P.F. Agris Structural and functional roles of the N1- and N3-protons of psi at tRNA' s position 39 Nucleic Acids Res. 27 1999 3543 3549
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3543-3549
-
-
Yarian, C.S.1
Basti, M.M.2
Cain, R.J.3
Ansari, G.4
Guenther, R.H.5
Sochacka, E.6
Czerwinska, G.7
Malkiewicz, A.8
Agris, P.F.9
-
76
-
-
0032189145
-
Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing
-
Y.T. Yu, M.D. Shu, and J.A. Steitz Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing EMBO J. 17 1998 5783 5795
-
(1998)
EMBO J.
, vol.17
, pp. 5783-5795
-
-
Yu, Y.T.1
Shu, M.D.2
Steitz, J.A.3
-
78
-
-
0032718276
-
Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA
-
Y. Zebarjadian, T. King, M.J. Fournier, L. Clarke, and J. Carbon Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA Mol. Cell. Biol. 19 1999 7461 7472
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 7461-7472
-
-
Zebarjadian, Y.1
King, T.2
Fournier, M.J.3
Clarke, L.4
Carbon, J.5
-
79
-
-
1642447085
-
Pseudouridines in and near the branch site recognition region of U2 snRNA are required for snRNP biogenesis and pre-mRNA splicing in Xenopus oocytes
-
X. Zhao, and Y.T. Yu Pseudouridines in and near the branch site recognition region of U2 snRNA are required for snRNP biogenesis and pre-mRNA splicing in Xenopus oocytes RNA 10 2004 681 690
-
(2004)
RNA
, vol.10
, pp. 681-690
-
-
Zhao, X.1
Yu, Y.T.2
|