A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs

EMBO Journal

Volumn 16, Issue 15, 1997, Pages 4770-4776

  Bousquet Antonelli, Cécile ^a   Henry, Yves ^a   Gélugne, Jean Paul ^a   Caizergues Ferrer, Michèle ^a   Kiss, Tamás ^a  

^a Université Paul Sabatier   (France)

Author keywords

Gar1 protein; Nucleolus; Pseudouridine formation; RNA modification; snoRNP

Indexed keywords

ARGININE; FIBRILLARIN; GLYCINE; GUIDE RNA; NUCLEAR PROTEIN; PSEUDOURIDINE; RIBOSOME RNA; SMALL NUCLEAR RIBONUCLEOPROTEIN;

ARTICLE; CONTROLLED STUDY; METHYLATION; NONHUMAN; NUCLEOLUS; PRIORITY JOURNAL; RNA PROCESSING; RNA SEQUENCE; SACCHAROMYCES CEREVISIAE;

ALLELES; BASE SEQUENCE; DNA PRIMERS; FUNGAL PROTEINS; GENES, FUNGAL; NUCLEAR PROTEINS; POLYMERASE CHAIN REACTION; PSEUDOURIDINE; RIBONUCLEOPROTEINS; RIBONUCLEOPROTEINS, SMALL NUCLEOLAR; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, RIBOSOMAL; RNA, RIBOSOMAL, 18S; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TEMPERATURE;

EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 0030837031     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/16.15.4770     Document Type: Article

References (52)

1. Balakin, A.G., Smith, L. and Fournier, M.J. (1996) The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Cell, 86, 823-834.
2. Berben, G., Dumont, J., Gilliquet, V., Bolle, P.-A. and Hilger, F. (1991) The YDp plasmids: a uniform set of vectors bearing versatile gene disruption cassettes for Sacchawmyces cerevisiae. Yeast, 7, 475-477.
3. Brand, R.C., Klootwijk, J., Sibum, C.P. and Planta, R.J. (1979) Pseudo-uridylation of yeast ribosomal precursor RNA. Nucleic Acids Res., 7, 121-134.
4. Broach, J.R., Strathern, J.N. and Hicks, J.B. (1979) Transformation of yeast: development of a hybrid cloning vector and isolation of the CANI gene. Gene, 8, 121-133.
5. Brown, J.D., Hann, B.C. Medzihradszky, K.F., Niwa, M., Burlingame, A.L. and Walter, P. (1994) Subunits of the Saccharomyces cerevisiae signal recognition particle required for its functional expression. EMBO J., 13, 4390-4400.
6. Cadwell, R.C. and Joyce, G.F. (1992) In PCR Methods and Applications. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 28-33.
7. Cavaillé, J., Nicoloso, M. and Bachellerie, J.-P. (1996) Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides. Nature, 383, 732-735.
8. Chu, S., Archer, R.H., Zengel, J.M. and Lindahl, L. (1994) The RNA of RNase MRP is required for normal processing of ribosomal RNA. Proc. Natl Acad. Sci. USA, 91, 569-663.
9. Eichler, D.C. and Craig, N. (1995) Processing of eukaryotic ribosomal RNA. Prog. Nucleic Acids Res. Mol. Biol., 49, 179-239.
10. Filipowicz, W. and Kiss, T. (1993) Structure and function of small nucleolar snRNPs. Mol. Biol. Rep., 18, 149-156.
11. Filipowicz, W. and Shatkin, A.J. (1983) Origin of splice junction phosphate in tRNAs processed by HeLa cell extract. Cell, 32, 547-557.
12. Fournier, M.J. and Maxwell, E.S. (1993) The nucleolar snRNAs: catching up with the spliceosomal snRNAs. Trends Biochem. Sci., 18, 131-135.
13. Ganot, P. Bortolin, M.-L. and Kiss, T. (1997a) Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell, 89, 799-809.
14. Ganot, P., Caizergues-Ferrer, M. and Kiss, T. (1997b) The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. Genes Dev., 11, 941-956.
15. Girard, J.-P., Lehtonen, H., Caizergues-Ferrer, M., Amalric, F., Tollervey, D. and Lapeyre, B. (1992) GAR1 is an essential small nucleolar RNP protein required for pre-rRNA processing in yeast. EMBO J., 11, 673-682.
16. Girard, J.-P., Caizergues-Ferrer, M. and Lapeyre, B. (1993) The SpGARI gene of Schizosaccharomyces pombe encodes the functional homologue of the snoRNP protein GAR1 of Saccharomyces cerevisiae. Nucleic Acids Res., 21, 2146-2155.
17. Girard, J.-P. Bagni, C., Caizergues-Ferrer, M., Amalric, F. and Lapeyre, B. (1994) Identification of a segment of the small nucleolar ribonucleoprotein-associated protein GAR1 that is sufficient for nucleolar accumulation. J. Biol. Chem., 269, 18499-18506.
18. Hadjiolov, A.A. (1985) The nucleolus and ribosome biogenesis. In Alfert, M., Beermann, W., Goldstein, L., Porter, K.R. and Sitte, P. (eds), Cell Biology Monographs. Springer-Verlag, Wien.
19. Hughes, J.M.X. and Ares, M.Jr (1991) Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and prevents formation of 18S ribosomal RNA. EMBO J., 10, 4231-4239.
20. Jeanteur, P. Amaldi, F. and Attardi, G. (1968) Partial sequence analysis of ribosomal RNA from HeLa cells. II Evidence for sequences of non-ribosomal type in 45S and 32S ribosomal RNA precursors. J. Mol. Biol., 33, 757-775.
21. Kass, S., Tyc, K., Steitz, J.A. and Sollner-Webb, B. (1990) The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing. Cell, 60, 897-908.
22. Keith, G. (1995) Mobilities of modified ribonucleotides on two-dimensional cellulose thin-layer chromatography. Biochimie, 77, 142-144.
23. Kiss-László, Z., Henry, Y., Bachellerie, J.-P., Caizergues-Ferrer, M. and Kiss, T. (1996) Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell, 85, 1077-1088.
24. Koonin, E.V. (1996) Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases. Nucleic Acids Res., 24, 2411-2415.
25. Kranz, J.E. and Holm, C. (1990) Cloning by function: an alternative approach for identifying yeast homologues of genes from other organisms. Proc. Natl Acad. Sci. USA, 87, 6629-6633.
26. 2′-methylated nucleotides. Significance of their selective occurrence in rRNA domains that function in ribosome-catalyzed synthesis of the peptide bonds in proteins. Biochimie, 77, 7-15.
27. Li, H.V., Zagorski, J. and Fournier, M.J. (1990) Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol. Cell. Biol., 10, 1145-1152.
28. Lübben, B., Fabrizio, P., Kastner, B. and Lührmann, R. (1995) Isolation and characterization of the small nucleolar ribonucleoprotein particle snR30 from Saccharomyces cerevisiae. J. Biol. Chem., 270, 11549-11554.
29. Lygerou, Z., Allmang, C. Tollervey, D. and Séraphin, B. (1996) Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro. Science, 272, 268-270.
30. Maden, B.E.H. (1990) The numerous modified nucleotides in eukaryotic ribosomal RNA. Prog. Nucleic Acids Res., 39, 241-303.
31. Maxwell, E.S. and Fournier, M.J. (1995) The small nucleolar RNAs. Annu. Rev. Biochem., 35, 897-934.
32. Morrissey, J.P. and Tollervey, D. (1993) Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis. Mol. Cell. Biol., 13, 2469-2477.
33. Nicoloso, M, Qu, L.-H. Michot, B. and Bachellerie, J.-P. (1996) Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2′-O-ribose methylation of rRNAs. J. Mol. Biol., 260, 178-195.
34. Ofengand, J., Bakin, A., Wrzesinski, J., Nurse, K. and Lane, B.G. (1995) The pseudouridine residues of ribosomal RNA. Biochem. Cell Biol., 73, 915-924.
35. Peculis, B.A. and Steitz, J.A. (1993) Disruption of U8 nucleolar snRNA inhibits 5.8S and 28S rRNA processing in the Xenopus oocyte. Cell, 73, 1233-1245.
36. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
37. Savino, R. and Gerbi, S.A. (1990) In vivo disruption of Xenopus U3 snRNA affects ribosomal RNA processing. EMBO J., 9, 2299-2308.
38. Schimmang, T., Tollervey, D., Kern, H., Frank, R. and Hurt, E.C. (1989) A yeast nucleolar protein related to mammalian fibrillarin is associated with small nucleolar RNA and is essential for viability. EMBO J., 8, 4015-4024.
39. Schmitt, M.E. and Clayton, D.A. (1993) Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae. Mol. Cell. Biol., 13, 7935-7941.
40. Smith, J.D. and Dunn, D.B. (1959) An additional sugar component of ribonucleic acids. Biochim. Biophys. Acta, 31, 573-575.
41. Sollner-Webb, B., Tycowski, K.T. and Steitz, J.A. (1996) Ribosomal RNA processing in eukaryotes. In Zimmermann, R.A. and Dahlberg, A.E. (eds). Ribosomal RNA. Structure, Evolution, Processing, and Function in Protein Biosynthesis. CRC Press, Boca Raton, FL, pp. 469-490.
42. Tollervey, D. and Kiss, T. (1997) Function and synthesis of small nucleolar RNAs. Curr. Opin. Cell Biol., 9, 337-342.
43. Tollervey, D. and Mattaj, I.W. (1987) Fungal small nuclear ribonucleo-proteins share properties with plant and vertebrate U-snRNPs. EMBO J., 6, 469-476.
44. Tollervey, D., Lehtonen, H., Carmo-Fonseca, M. and Hurt, E.C. (1991) The small nucleolar RNP protein NOP1 (fibrillarin) is required for pre-rRNA processing in yeast. EMBO J., 10, 573-583.
45. Tollervey, D., Lehtonen, H., Jansen, R., Kern, H. and Hurt, E.C. (1993) Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly. Cell, 72, 443-457.
46. Tyc, K. and Steitz, J.A. (1989) U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. EMBO J., 8, 3113-3119.
47. Tycowski, K.T., Shu, M.-D. and Steitz, J.A. (1993) A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3. Genes Dev., 6, 1120-1130.
48. Tycowski, K.T., Shu, M.-D. and Steitz, J.A. (1994) Requirement for intronencoded U22 small nucleolar RNA in 18S ribosomal RNA maturation. Science, 266, 1558-1561.
49. Tycowski, K.T., Shu, M.-D. and Steitz, J.A. (1996a) A mammalian gene with introns instead of exons generating stable RNA products. Nature, 379, 464-466.
50. Tycowski, K.T., Smith, C.M., Shu, M.-D. and Steitz, J.A. (1996b) A small nucleolar RNA required for site-specific ribose methylation of rRNA in Xenopus. Proc. Natl Acad. Sci. USA, 93, 14480-14485.
51. Venema, J. and Tollervey, D. (1995) Processing of pre-ribosomal RNA in Saccharomyces cerevisiae. Yeast, 11, 1629-1650.
52. Warner, J.R. (1991) Labeling of RNA and phosphoproteins in Saccharomyces cerevisiae. In Guthrie, C. and Flink, G.R. (eds), Guide to Yeast Genetics and Molecular Biology. Academic Press, Vol. 194, pp. 423-428.