메뉴 건너뛰기




Volumn 283, Issue 5405, 1999, Pages 1168-1171

A computational screen for methylation guide snoRNAs in yeast

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENE MAPPING; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA METHYLATION; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS;

EID: 0033582628     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.283.5405.1168     Document Type: Article
Times cited : (403)

References (44)
  • 1
    • 10244239321 scopus 로고    scopus 로고
    • A. Goffeau et al., Science 274, 546 (1996).
    • (1996) Science , vol.274 , pp. 546
    • Goffeau, A.1
  • 3
    • 0030572699 scopus 로고    scopus 로고
    • A. G. Balakin, L. Smith, M. J. Fournier, Cell 86, 823 (1996); D. Tollervey and T. Kiss, Curr. Opin. Cell Biol. 9, 337 (1997); J.-P. Bachellerie and J. Cavaille, Trends Biochem. Sci. 22, 257 (1997); C. M. Smith and J. A. Steitz, Cell 89, 669 (1997).
    • (1996) Cell , vol.86 , pp. 823
    • Balakin, A.G.1    Smith, L.2    Fournier, M.J.3
  • 4
    • 0030963268 scopus 로고    scopus 로고
    • A. G. Balakin, L. Smith, M. J. Fournier, Cell 86, 823 (1996); D. Tollervey and T. Kiss, Curr. Opin. Cell Biol. 9, 337 (1997); J.-P. Bachellerie and J. Cavaille, Trends Biochem. Sci. 22, 257 (1997); C. M. Smith and J. A. Steitz, Cell 89, 669 (1997).
    • (1997) Curr. Opin. Cell Biol. , vol.9 , pp. 337
    • Tollervey, D.1    Kiss, T.2
  • 5
    • 0030742988 scopus 로고    scopus 로고
    • A. G. Balakin, L. Smith, M. J. Fournier, Cell 86, 823 (1996); D. Tollervey and T. Kiss, Curr. Opin. Cell Biol. 9, 337 (1997); J.-P. Bachellerie and J. Cavaille, Trends Biochem. Sci. 22, 257 (1997); C. M. Smith and J. A. Steitz, Cell 89, 669 (1997).
    • (1997) Trends Biochem. Sci. , vol.22 , pp. 257
    • Bachellerie, J.-P.1    Cavaille, J.2
  • 6
    • 0030656387 scopus 로고    scopus 로고
    • A. G. Balakin, L. Smith, M. J. Fournier, Cell 86, 823 (1996); D. Tollervey and T. Kiss, Curr. Opin. Cell Biol. 9, 337 (1997); J.-P. Bachellerie and J. Cavaille, Trends Biochem. Sci. 22, 257 (1997); C. M. Smith and J. A. Steitz, Cell 89, 669 (1997).
    • (1997) Cell , vol.89 , pp. 669
    • Smith, C.M.1    Steitz, J.A.2
  • 7
    • 0003091268 scopus 로고
    • M. Alfert et al., Eds. Springer-Verlag, Vienna
    • A. A. Hadjiolov, in Cell Biology Monographs, M. Alfert et al., Eds. (Springer-Verlag, Vienna, 1985), pp. 1-268; J. L. Woolford Jr., Adv. Genet. 29, 63 (1991).
    • (1985) Cell Biology Monographs , pp. 1-268
    • Hadjiolov, A.A.1
  • 8
    • 0026297939 scopus 로고
    • A. A. Hadjiolov, in Cell Biology Monographs, M. Alfert et al., Eds. (Springer-Verlag, Vienna, 1985), pp. 1-268; J. L. Woolford Jr., Adv. Genet. 29, 63 (1991).
    • (1991) Adv. Genet. , vol.29 , pp. 63
    • Woolford J.L., Jr.1
  • 9
    • 0030771087 scopus 로고    scopus 로고
    • J. Ni, A. L. Tien, M. J. Fournier, Cell 89, 565 (1997); P. Gannot, M.-L. Bortolin, T. Kiss, ibid., p. 799.
    • (1997) Cell , vol.89 , pp. 565
    • Ni, J.1    Tien, A.L.2    Fournier, M.J.3
  • 13
    • 0025602086 scopus 로고
    • A. Jarmolowski, J. Zagorski, H. V. Li, M. J. Fournier, EMBO J. 9, 4503 (1990); N. J. Watkins, D. R. Newman, J. F. Kuhn, E. S. Maxwell, RNA 4, 582 (1998); T. S. Lang, A. Borovjagin, E. S. Maxwell, S. A. Gerbi, EMBO J. 17, 3176 (1998); D. A. Samarsky, M. J. Fournier, R. H. Singer, E. Bertrand, ibid., p. 3747.
    • (1990) EMBO J. , vol.9 , pp. 4503
    • Jarmolowski, A.1    Zagorski, J.2    Li, H.V.3    Fournier, M.J.4
  • 14
    • 0031968494 scopus 로고    scopus 로고
    • A. Jarmolowski, J. Zagorski, H. V. Li, M. J. Fournier, EMBO J. 9, 4503 (1990); N. J. Watkins, D. R. Newman, J. F. Kuhn, E. S. Maxwell, RNA 4, 582 (1998); T. S. Lang, A. Borovjagin, E. S. Maxwell, S. A. Gerbi, EMBO J. 17, 3176 (1998); D. A. Samarsky, M. J. Fournier, R. H. Singer, E. Bertrand, ibid., p. 3747.
    • (1998) RNA , vol.4 , pp. 582
    • Watkins, N.J.1    Newman, D.R.2    Kuhn, J.F.3    Maxwell, E.S.4
  • 15
    • 0032100640 scopus 로고    scopus 로고
    • A. Jarmolowski, J. Zagorski, H. V. Li, M. J. Fournier, EMBO J. 9, 4503 (1990); N. J. Watkins, D. R. Newman, J. F. Kuhn, E. S. Maxwell, RNA 4, 582 (1998); T. S. Lang, A. Borovjagin, E. S. Maxwell, S. A. Gerbi, EMBO J. 17, 3176 (1998); D. A. Samarsky, M. J. Fournier, R. H. Singer, E. Bertrand, ibid., p. 3747.
    • (1998) EMBO J. , vol.17 , pp. 3176
    • Lang, T.S.1    Borovjagin, A.2    Maxwell, E.S.3    Gerbi, S.A.4
  • 16
    • 0032125707 scopus 로고    scopus 로고
    • A. Jarmolowski, J. Zagorski, H. V. Li, M. J. Fournier, EMBO J. 9, 4503 (1990); N. J. Watkins, D. R. Newman, J. F. Kuhn, E. S. Maxwell, RNA 4, 582 (1998); T. S. Lang, A. Borovjagin, E. S. Maxwell, S. A. Gerbi, EMBO J. 17, 3176 (1998); D. A. Samarsky, M. J. Fournier, R. H. Singer, E. Bertrand, ibid., p. 3747.
    • EMBO J. , pp. 3747
    • Samarsky, D.A.1    Fournier, M.J.2    Singer, R.H.3    Bertrand, E.4
  • 27
    • 0028272315 scopus 로고    scopus 로고
    • _ and R. Durbin, Nucleic Acids Res. 22, 2079 (1994); Y. Sakakibara et al., ibid., p. 5112.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2079
    • Durbin, R.1
  • 30
    • 0345713363 scopus 로고    scopus 로고
    • note
    • Random sequences were generated by a fifth-order Markov chain based on 6-mer frequencies within the yeast genome.
  • 31
    • 0027237665 scopus 로고
    • r). A polymerase chain reaction (PCR)-based HIS3 insertion scheme was used as described by A. Baudin, O. Ozier-Kalogeropoulos, A. Denouel, F. Lacroute, and C. Cullin [Nucleic Acids Res. 21, 3329 (1993)], with a protocol provided by L. Riles. Transformants growing on yeast extract, peptone, and dextrose His plates were picked and assayed by PCR for correct integration of the HIS3 marker gene replacing the target snoRNA.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3329
    • Baudin, A.1    Ozier-Kalogeropoulos, O.2    Denouel, A.3    Lacroute, F.4    Cullin, C.5
  • 33
    • 0345713362 scopus 로고    scopus 로고
    • data not shown. Primer extension gels are available on the WWW (28)
    • T. M. Lowe and S. R. Eddy, data not shown. Primer extension gels are available on the WWW (28).
    • Lowe, T.M.1    Eddy, S.R.2
  • 35
    • 0031935899 scopus 로고    scopus 로고
    • E. Petfalski et al., Mol. Cell. Biol. 18, 1181 (1998); G. Chanfreau, G. Rotondo, P. Legrain, A. Jacquier, EMBO J. 17, 3726 (1998); G. Chanfreau, P. Legrain, A. Jacquier, J. Mol. Biol. 284, 975 (1998); L. H. Qu et al., Mol. Cell. Biol. 19, 1144 (1999).
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 1181
    • Petfalski, E.1
  • 36
    • 0032126735 scopus 로고    scopus 로고
    • E. Petfalski et al., Mol. Cell. Biol. 18, 1181 (1998); G. Chanfreau, G. Rotondo, P. Legrain, A. Jacquier, EMBO J. 17, 3726 (1998); G. Chanfreau, P. Legrain, A. Jacquier, J. Mol. Biol. 284, 975 (1998); L. H. Qu et al., Mol. Cell. Biol. 19, 1144 (1999).
    • (1998) EMBO J. , vol.17 , pp. 3726
    • Chanfreau, G.1    Rotondo, G.2    Legrain, P.3    Jacquier, A.4
  • 37
    • 0032509095 scopus 로고    scopus 로고
    • E. Petfalski et al., Mol. Cell. Biol. 18, 1181 (1998); G. Chanfreau, G. Rotondo, P. Legrain, A. Jacquier, EMBO J. 17, 3726 (1998); G. Chanfreau, P. Legrain, A. Jacquier, J. Mol. Biol. 284, 975 (1998); L. H. Qu et al., Mol. Cell. Biol. 19, 1144 (1999).
    • (1998) J. Mol. Biol. , vol.284 , pp. 975
    • Chanfreau, G.1    Legrain, P.2    Jacquier, A.3
  • 38
    • 0032906632 scopus 로고    scopus 로고
    • E. Petfalski et al., Mol. Cell. Biol. 18, 1181 (1998); G. Chanfreau, G. Rotondo, P. Legrain, A. Jacquier, EMBO J. 17, 3726 (1998); G. Chanfreau, P. Legrain, A. Jacquier, J. Mol. Biol. 284, 975 (1998); L. H. Qu et al., Mol. Cell. Biol. 19, 1144 (1999).
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 1144
    • Qu, L.H.1
  • 39
    • 0030749116 scopus 로고    scopus 로고
    • D. J. Leader et al., EMBO J. 16, 5742 (1997); P. J. Shaw, A. F. Beven, D. J. Leader, J. W. Brown, J. Cell Sci. 111, 2121 (1998).
    • (1997) EMBO J. , vol.16 , pp. 5742
    • Leader, D.J.1
  • 41
    • 0345713360 scopus 로고    scopus 로고
    • All computer codes, snoRNA search results, primer sequences, gel images, and other referenced data can be accessed on the WWW at rna.wustl.edu/snoRNAdb/
  • 43
    • 0345713359 scopus 로고    scopus 로고
    • The S. cerevisiae database is available at: genome-www.stanford.edu/Saccharomyces/
  • 44
    • 0345281790 scopus 로고    scopus 로고
    • note
    • We thank L. Lutfiyya and L. Riles from the M. Johnston lab for protocols and guidance in all aspects of yeast handling, gene disruptions, and colony PCR and RNA preparations; M. Fournier, J. Ni, D. Samarsky, and B. E. H. Maden for helpful discussions and sharing of unpublished observations; S. Johnson and L. Lutfiyya for careful reading of the manuscript; and M. Johnston for providing the haploid strain yM4585 and diploid strain yM4587. Supported by NIH grant R01-HG01363 and by a gift from Eli Lilly.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.