-
1
-
-
33644644556
-
13C labeling of aromatic side chains in proteins for NMR relaxation measurements
-
13C labeling of aromatic side chains in proteins for NMR relaxation measurements. J. Am. Chem. Soc. 128, 2506-2507.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 2506-2507
-
-
Teilum, K.1
Brath, U.2
Lundstrom, P.3
Akke, M.4
-
2
-
-
33748781457
-
The dynamic energy landscape of dihydrofolate reductase catalysis
-
Boehr, D. D., McElheny, D., Dyson, H. J., and Wright, P. E. (2006) The dynamic energy landscape of dihydrofolate reductase catalysis. Science 313, 1638-1642.
-
(2006)
Science
, vol.313
, pp. 1638-1642
-
-
Boehr, D.D.1
McElheny, D.2
Dyson, H.J.3
Wright, P.E.4
-
3
-
-
33646776723
-
Reconciling the "old" and "new" views of protein allostery: A molecular simulation study of Chemotaxis Y protein (chey)
-
Formaneck, M. S., Ma, L., and Cui, Q. (2006) Reconciling the "old" and "new" views of protein allostery: A molecular simulation study of Chemotaxis Y protein (chey). Proteins: Struct., Funct., Bioinf. 63, 846-867.
-
(2006)
Proteins: Struct., Funct., Bioinf. 63
, pp. 846-867
-
-
Formaneck, M.S.1
Ma, L.2
Cui, Q.3
-
4
-
-
18744371588
-
Molecular dynamics and protein function
-
Karplus, M., and Kuriyan, J. (2005) Molecular dynamics and protein function. Proc. Natl. Acad. Sci. U.S.A. 102, 6679-6685.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 6679-6685
-
-
Karplus, M.1
Kuriyan, J.2
-
5
-
-
0346220393
-
The role of dynamics in allosteric regulation
-
Kern, D., and Zuiderweg, E. R. P. (2003) The role of dynamics in allosteric regulation. Curr. Opin. Struct. Biol. 13, 748-757.
-
(2003)
Curr. Opin. Struct. Biol
, vol.13
, pp. 748-757
-
-
Kern, D.1
Zuiderweg, E.R.P.2
-
6
-
-
0034760077
-
Dynamic activation of protein function: A view emerging from NMR spectroscopy
-
Wand, A. J. (2001) Dynamic activation of protein function: A view emerging from NMR spectroscopy. Nat. Struct. Biol. 8, 926-931.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 926-931
-
-
Wand, A.J.1
-
7
-
-
34248332629
-
Functional residues serve a dominant role in mediating the cooperativity of the protein ensemble
-
Liu, T., Whitten, S. T., and Hilser, V. J. (2007) Functional residues serve a dominant role in mediating the cooperativity of the protein ensemble. Proc. Natl. Acad. Sci. U.S.A. 104, 4347-4352.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 4347-4352
-
-
Liu, T.1
Whitten, S.T.2
Hilser, V.J.3
-
8
-
-
36048968561
-
Thermodynamic analysis shows conformational coupling and dynamics confer substrate specificity in fructose-1,6-bisphosphate aldolase
-
Pezza, J. A., Stopa, J. D., Brunyak, E. M., Allen, K. N., and Tolan, D. R. (2007) Thermodynamic analysis shows conformational coupling and dynamics confer substrate specificity in fructose-1,6-bisphosphate aldolase. Biochemistry 46, 13010-13018.
-
(2007)
Biochemistry
, vol.46
, pp. 13010-13018
-
-
Pezza, J.A.1
Stopa, J.D.2
Brunyak, E.M.3
Allen, K.N.4
Tolan, D.R.5
-
9
-
-
33749029273
-
Pump-probe molecular dynamics as a tool for studying protein motion and long range coupling
-
Sharp, K., and Skinner, J. J. (2006) Pump-probe molecular dynamics as a tool for studying protein motion and long range coupling. Proteins: Struct., Funct., Bioinf. 65, 347-361.
-
(2006)
Proteins: Struct., Funct., Bioinf. 65
, pp. 347-361
-
-
Sharp, K.1
Skinner, J.J.2
-
10
-
-
33746911627
-
Dynamic coupling and allosteric behavior in a nonallosteric protein
-
Clarkson, M. W., Gilmore, S. A., Edgell, M. H., and Lee, A. L. (2006) Dynamic coupling and allosteric behavior in a nonallosteric protein. Biochemistry 45, 7693-7699.
-
(2006)
Biochemistry
, vol.45
, pp. 7693-7699
-
-
Clarkson, M.W.1
Gilmore, S.A.2
Edgell, M.H.3
Lee, A.L.4
-
11
-
-
33748363077
-
Dynamically driven protein allostery
-
Popovych, N., Sun, S., Ebright, R. H., and Kalodimos, C. G. (2006) Dynamically driven protein allostery. Nat. Struct. Mol. Biol. 13, 831-838.
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 831-838
-
-
Popovych, N.1
Sun, S.2
Ebright, R.H.3
Kalodimos, C.G.4
-
12
-
-
22444450449
-
Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion
-
Ota, N., and Agard, D. A. (2005) Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion. J. Mol. Biol. 351, 345-354.
-
(2005)
J. Mol. Biol
, vol.351
, pp. 345-354
-
-
Ota, N.1
Agard, D.A.2
-
13
-
-
0347753736
-
-
Fuentes, E. J., Der, C. J., and Lee, A. L. (2004) Ligand-dependent dynamics and intramolecular signaling in a PDZ domain. J. Mol. Biol. 335, 1105-1115.
-
Fuentes, E. J., Der, C. J., and Lee, A. L. (2004) Ligand-dependent dynamics and intramolecular signaling in a PDZ domain. J. Mol. Biol. 335, 1105-1115.
-
-
-
-
14
-
-
0034710950
-
Binding sites in Escherichia coli dihydrofolate reductase communicate by modulating the conformational ensemble
-
Pan, H., Lee, J. C., and Hilser, V. J. (2000) Binding sites in Escherichia coli dihydrofolate reductase communicate by modulating the conformational ensemble. Proc. Natl. Acad. Sci. U.S.A. 97, 12020-12025.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A
, vol.97
, pp. 12020-12025
-
-
Pan, H.1
Lee, J.C.2
Hilser, V.J.3
-
15
-
-
4744347909
-
Long-range dynamic effects of point mutations propagate through side chains in the serine protease inhibitor eglin c
-
Clarkson, M. W., and Lee, A. L. (2004) Long-range dynamic effects of point mutations propagate through side chains in the serine protease inhibitor eglin c. Biochemistry 43, 12448-12458.
-
(2004)
Biochemistry
, vol.43
, pp. 12448-12458
-
-
Clarkson, M.W.1
Lee, A.L.2
-
16
-
-
33745634372
-
Amino acid substitutions affecting protein dynamics in eglin c do not affect heat capacity change upon unfolding
-
Gribenko, A. V., Keiffer, T. R., and Makhatadze, G. I. (2006) Amino acid substitutions affecting protein dynamics in eglin c do not affect heat capacity change upon unfolding. Proteins: Struct., Funct., Bioinf. 64, 295-300.
-
(2006)
Proteins: Struct., Funct., Bioinf. 64
, pp. 295-300
-
-
Gribenko, A.V.1
Keiffer, T.R.2
Makhatadze, G.I.3
-
17
-
-
34249852867
-
High-affinity single-domain binding proteins with a binary-code interface
-
Koide, A., Gilbreth, R. N., Esaki, K., Tereshko, V., and Koide, S. (2007) High-affinity single-domain binding proteins with a binary-code interface. Proc. Natl. Acad. Sci. U.S.A. 104, 6632-6637.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 6632-6637
-
-
Koide, A.1
Gilbreth, R.N.2
Esaki, K.3
Tereshko, V.4
Koide, S.5
-
18
-
-
4344714933
-
Synthetic antibodies from a four-amino-acid code: A dominant role for tyrosine in antigen recognition
-
Fellouse, F. A., Wiesmann, C., and Sidhu, S. S. (2004) Synthetic antibodies from a four-amino-acid code: A dominant role for tyrosine in antigen recognition. Proc. Natl. Acad. Sci. U.S.A. 101, 12467-12472.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, pp. 12467-12472
-
-
Fellouse, F.A.1
Wiesmann, C.2
Sidhu, S.S.3
-
19
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
Lo Conte, L., Chothia, C., and Janin, J. (1999) The atomic structure of protein-protein recognition sites. J. Mol. Biol. 285, 2177-2198.
-
(1999)
J. Mol. Biol
, vol.285
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
20
-
-
0032479179
-
Anatomy of hot spots in protein interfaces
-
Bogan, A. A., and Thorn, K. S. (1998) Anatomy of hot spots in protein interfaces. J. Mol. Biol. 280, 1-9.
-
(1998)
J. Mol. Biol
, vol.280
, pp. 1-9
-
-
Bogan, A.A.1
Thorn, K.S.2
-
23
-
-
33646945580
-
Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution
-
Igumenova, T. I., Frederick, K. K., and Wand, A. J. (2006) Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution. Chem. Rev. 106, 1672-1699.
-
(2006)
Chem. Rev
, vol.106
, pp. 1672-1699
-
-
Igumenova, T.I.1
Frederick, K.K.2
Wand, A.J.3
-
24
-
-
33646719091
-
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity
-
Lipari, G., and Szabo, A. (1982) Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity. J. Am. Chem. Soc. 104, 4546-4559.
-
(1982)
J. Am. Chem. Soc
, vol.104
, pp. 4546-4559
-
-
Lipari, G.1
Szabo, A.2
-
25
-
-
33845553743
-
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results
-
Lipari, G., and Szabo, A. (1982) Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results. J. Am. Chem. Soc. 104, 4559-4570.
-
(1982)
J. Am. Chem. Soc
, vol.104
, pp. 4559-4570
-
-
Lipari, G.1
Szabo, A.2
-
26
-
-
34247257776
-
Cooperative propagation of local stability changes from low-stability and high-stability regions in a SH3 domain
-
Casares, S., Lopez-Mayorga, O., Vega, S., Camara-Artigas, A., and Conejero-Lara, F. (2007) Cooperative propagation of local stability changes from low-stability and high-stability regions in a SH3 domain. Proteins: Struct., Funct., Bioinf. 67, 531-547.
-
(2007)
Proteins: Struct., Funct., Bioinf. 67
, pp. 531-547
-
-
Casares, S.1
Lopez-Mayorga, O.2
Vega, S.3
Camara-Artigas, A.4
Conejero-Lara, F.5
-
27
-
-
33750795402
-
Evaluation of energetic and dynamic coupling networks in a PDZ domain protein
-
Fuentes, E. J., Gilmore, S. A., Mauldin, R. V., and Lee, A. L. (2006) Evaluation of energetic and dynamic coupling networks in a PDZ domain protein. J. Mol. Biol. 364, 337-351.
-
(2006)
J. Mol. Biol
, vol.364
, pp. 337-351
-
-
Fuentes, E.J.1
Gilmore, S.A.2
Mauldin, R.V.3
Lee, A.L.4
-
28
-
-
0037468633
-
Structural cooperativity in the SH3 domain studied by site-directed mutagenesis and amide hydrogen exchange
-
Casares, S., Sadqi, M., Lopez-Mayorga, O., Martinez, J. C., and Conejero-Lara, F. (2003) Structural cooperativity in the SH3 domain studied by site-directed mutagenesis and amide hydrogen exchange. FEBS Lett. 539, 125-130.
-
(2003)
FEBS Lett
, vol.539
, pp. 125-130
-
-
Casares, S.1
Sadqi, M.2
Lopez-Mayorga, O.3
Martinez, J.C.4
Conejero-Lara, F.5
-
29
-
-
0036180562
-
Propagation of a single destabilizing mutation throughout the Escherichia coli ribonuclease HI native state
-
Spudich, G., Lorenz, S., and Marqusee, S. (2002) Propagation of a single destabilizing mutation throughout the Escherichia coli ribonuclease HI native state. Protein Sci. 11, 522-528.
-
(2002)
Protein Sci
, vol.11
, pp. 522-528
-
-
Spudich, G.1
Lorenz, S.2
Marqusee, S.3
-
30
-
-
0030475876
-
NMR studies of structure, hydrogen exchange, and main-chain dynamics in a disrupted-core mutant of thioredoxin
-
De-Lorimier, R., Hellinga, H. W., and Spicer, L. D. (1996) NMR studies of structure, hydrogen exchange, and main-chain dynamics in a disrupted-core mutant of thioredoxin. Protein Sci. 5, 2552-2565.
-
(1996)
Protein Sci
, vol.5
, pp. 2552-2565
-
-
De-Lorimier, R.1
Hellinga, H.W.2
Spicer, L.D.3
-
31
-
-
0020855355
-
Hydrogen-exchange and structural dynamics of proteins and nucleic-acids
-
Englander, S. W., and Kallenbach, N. R. (1983) Hydrogen-exchange and structural dynamics of proteins and nucleic-acids. Q. Rev. Biophys. 16, 521-655.
-
(1983)
Q. Rev. Biophys
, vol.16
, pp. 521-655
-
-
Englander, S.W.1
Kallenbach, N.R.2
-
32
-
-
0027250665
-
Primary structure effects on peptide group hydrogen-exchange
-
Bai, Y. W., Milne, J. S., Mayne, L., and Englander, S. W. (1993) Primary structure effects on peptide group hydrogen-exchange. Proteins 17, 75-86.
-
(1993)
Proteins
, vol.17
, pp. 75-86
-
-
Bai, Y.W.1
Milne, J.S.2
Mayne, L.3
Englander, S.W.4
-
33
-
-
0028067152
-
Protein stability parameters measured by hydrogen-exchange
-
Bai, Y. W., Milne, J. S., Mayne, L., and Englander, S. W. (1994) Protein stability parameters measured by hydrogen-exchange. Proteins 20, 4-14.
-
(1994)
Proteins
, vol.20
, pp. 4-14
-
-
Bai, Y.W.1
Milne, J.S.2
Mayne, L.3
Englander, S.W.4
-
34
-
-
0029400480
-
NMRPipe - a multidimensional spectral processing system based on Unix pipes
-
Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe - a multidimensional spectral processing system based on Unix pipes. J. Biomol. NMR 6, 277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
35
-
-
34249765651
-
Nmrview: A computer program for the visualization and analysis of NMR data
-
Johnson, B. A., and Blevins, R. A. (1994) Nmrview: A computer program for the visualization and analysis of NMR data. J. Biomol. NMR 4, 603-614.
-
(1994)
J. Biomol. NMR
, vol.4
, pp. 603-614
-
-
Johnson, B.A.1
Blevins, R.A.2
-
37
-
-
0028282555
-
15N NMR relaxation
-
15N NMR relaxation. Biochemistry 33, 5984-6003.
-
(1994)
Biochemistry
, vol.33
, pp. 5984-6003
-
-
Farrow, N.A.1
Muhandiram, R.2
Singer, A.U.3
Pascal, S.M.4
Kay, C.M.5
Gish, G.6
Shoelson, S.E.7
Pawson, T.8
Forman-Kay, J.D.9
Kay, L.E.10
-
38
-
-
0001229242
-
Side-chain motion with two degrees of freedom in peptides. An NMR study of phenylalanine side chains in antamanide
-
Bremi, T., Ernst, M., and Ernst, R. R. (1994) Side-chain motion with two degrees of freedom in peptides. An NMR study of phenylalanine side chains in antamanide. J. Phys. Chem. 98, 9322-9334.
-
(1994)
J. Phys. Chem
, vol.98
, pp. 9322-9334
-
-
Bremi, T.1
Ernst, M.2
Ernst, R.R.3
-
40
-
-
0037266991
-
The use of model selection in the model-free analysis of protein dynamics
-
d'Auvergne, E. J., and Gooley, P. R. (2003) The use of model selection in the model-free analysis of protein dynamics. J. Biomol. NMR 25, 25-39.
-
(2003)
J. Biomol. NMR
, vol.25
, pp. 25-39
-
-
d'Auvergne, E.J.1
Gooley, P.R.2
-
41
-
-
20444393525
-
Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events om proteins on the time scale of seconds
-
Schanda, P., and Brutscher, B. (2005) Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events om proteins on the time scale of seconds. J. Am. Chem. Soc. 127, 8014-8015.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 8014-8015
-
-
Schanda, P.1
Brutscher, B.2
-
42
-
-
0038275885
-
High-precision, high-throughput stability determinations facilitated by robotics and a semiautomated titrating fluorometer
-
Edgell, M. H., Sims, D. A., Pielak, G. J., and Yi, F. (2003) High-precision, high-throughput stability determinations facilitated by robotics and a semiautomated titrating fluorometer. Biochemistry 42, 7587-7593.
-
(2003)
Biochemistry
, vol.42
, pp. 7587-7593
-
-
Edgell, M.H.1
Sims, D.A.2
Pielak, G.J.3
Yi, F.4
-
43
-
-
0026345750
-
Folding of chymotrypsin inhibitor 2. Evidence for a two-state transtion
-
Jackson, S. E., and Fersht, A. R. (1991) Folding of chymotrypsin inhibitor 2. Evidence for a two-state transtion. Biochemistry 30, 10428-10435.
-
(1991)
Biochemistry
, vol.30
, pp. 10428-10435
-
-
Jackson, S.E.1
Fersht, A.R.2
-
44
-
-
0042431708
-
Hypothesis testing III: Counts and medians
-
Applegate, K. E., Tello, R., and Ying, J. (2003) Hypothesis testing III: Counts and medians. Radiology 228, 603-608.
-
(2003)
Radiology
, vol.228
, pp. 603-608
-
-
Applegate, K.E.1
Tello, R.2
Ying, J.3
-
45
-
-
0002033443
-
The logic of inductive inference
-
Fisher, R. A. (1935) The logic of inductive inference. J. R. Stat. Soc. 98, 39-82.
-
(1935)
J. R. Stat. Soc
, vol.98
, pp. 39-82
-
-
Fisher, R.A.1
-
47
-
-
23344451429
-
Relating side-chain mobility in proteins to rotameric transitions: Insights from molecular dynamics simulations and NMR
-
Hu, H., Hermans, J., and Lee, A. L. (2005) Relating side-chain mobility in proteins to rotameric transitions: Insights from molecular dynamics simulations and NMR. J. Biomol. NMR 32, 151-162.
-
(2005)
J. Biomol. NMR
, vol.32
, pp. 151-162
-
-
Hu, H.1
Hermans, J.2
Lee, A.L.3
-
48
-
-
0037668073
-
Beyond the decoupling approximation in the model-free approach for the interpretation of NMR relaxation of macromolecules in solution
-
Vugmeyster, L., Raleigh, D. P., Palmer, A. G., III, and Vugmeister, B. E. (2003) Beyond the decoupling approximation in the model-free approach for the interpretation of NMR relaxation of macromolecules in solution. J. Am. Chem. Soc. 125, 8400-8404.
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 8400-8404
-
-
Vugmeyster, L.1
Raleigh, D.P.2
Palmer III, A.G.3
Vugmeister, B.E.4
-
49
-
-
33750482942
-
Partially unfolded forms and non-two-state folding of a β-sandwich: FHA domain from arabidopsis receptor ktnase-associated protein phosphatase
-
Liang, X.,., Lee, G.-i., and Van Doren, S. R. (2006) Partially unfolded forms and non-two-state folding of a β-sandwich: FHA domain from arabidopsis receptor ktnase-associated protein phosphatase. J. Mol. Biol. 364, 225-240.
-
(2006)
J. Mol. Biol
, vol.364
, pp. 225-240
-
-
Liang, X.1
Lee, G.-I.2
Van Doren, S.R.3
-
50
-
-
1842426942
-
Direct demonstration of structural similarity between native and denatured eglin c
-
Ohnishi, S., Lee, A. L., Edgell, M. H., and Shortle, D. (2004) Direct demonstration of structural similarity between native and denatured eglin c. Biochemistry 43, 4064-4070.
-
(2004)
Biochemistry
, vol.43
, pp. 4064-4070
-
-
Ohnishi, S.1
Lee, A.L.2
Edgell, M.H.3
Shortle, D.4
-
51
-
-
0031552596
-
Hydrogen exchange in chymotrypsin inhibitor 2 probed by mutagenesis
-
Neira, J. L., Itzhaki, L. S., Otzen, D. E., Davis, B., and Fersht, A. R. (1997) Hydrogen exchange in chymotrypsin inhibitor 2 probed by mutagenesis. J. Mol. Biol. 270, 99-110.
-
(1997)
J. Mol. Biol
, vol.270
, pp. 99-110
-
-
Neira, J.L.1
Itzhaki, L.S.2
Otzen, D.E.3
Davis, B.4
Fersht, A.R.5
-
52
-
-
32344434479
-
The changing landscape of protein allostery
-
Swain, J. F., and Gierasch, L. M. (2006) The changing landscape of protein allostery. Curr. Opin. Struct. Biol. 16, 102-108.
-
(2006)
Curr. Opin. Struct. Biol
, vol.16
, pp. 102-108
-
-
Swain, J.F.1
Gierasch, L.M.2
-
53
-
-
0035479570
-
Coordination topology and stability for the native and binding conformers of chymotrypsin inhibitor 2
-
Baysal, C., and Atilgan, A. R. (2001) Coordination topology and stability for the native and binding conformers of chymotrypsin inhibitor 2. Proteins 45, 62-70.
-
(2001)
Proteins
, vol.45
, pp. 62-70
-
-
Baysal, C.1
Atilgan, A.R.2
-
54
-
-
0032544060
-
The structural distribution of cooperative interactions in proteins: Analysis of the native state ensemble
-
Hilser, V. J., Dowdy, D., Oas, T. G., and Freire, E. (1998) The structural distribution of cooperative interactions in proteins: Analysis of the native state ensemble. Proc. Natl. Acad. Sci. U.S.A. 95, 9903-9908.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A
, vol.95
, pp. 9903-9908
-
-
Hilser, V.J.1
Dowdy, D.2
Oas, T.G.3
Freire, E.4
-
55
-
-
0021658956
-
Allostery without conformational change - a plausible model
-
Cooper, A., and Dryden, D. T. F. (1984) Allostery without conformational change - a plausible model. Eur. Biophys. J. Biophys. Lett. 11, 103-109.
-
(1984)
Eur. Biophys. J. Biophys. Lett
, vol.11
, pp. 103-109
-
-
Cooper, A.1
Dryden, D.T.F.2
-
56
-
-
34250839422
-
Long-range structural and dynamical changes induced by cofactor binding in DNA methyltransferase m.Hhai
-
Zhou, H., Shatz, W., Purdy, M. M., Fera, N., Dahlquist, F. W., and Reich, N. O. (2007) Long-range structural and dynamical changes induced by cofactor binding in DNA methyltransferase m.Hhai. Biochemistry 46, 7261-7268.
-
(2007)
Biochemistry
, vol.46
, pp. 7261-7268
-
-
Zhou, H.1
Shatz, W.2
Purdy, M.M.3
Fera, N.4
Dahlquist, F.W.5
Reich, N.O.6
-
57
-
-
33745183353
-
Amide hydrogen exchange reveals conformational changes in hsp70 chaperones important for allosteric regulation
-
Rist, W., Graf, C., Bukau, B., and Mayer, M. P. (2006) Amide hydrogen exchange reveals conformational changes in hsp70 chaperones important for allosteric regulation. J. Biol. Chem. 281, 16493-16501.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 16493-16501
-
-
Rist, W.1
Graf, C.2
Bukau, B.3
Mayer, M.P.4
-
58
-
-
0035958029
-
Structural characterization of protein kinase A as a function of nucleotide binding: Hydrogen-deuterium exchange studies using MALDI-TOF MS detection
-
Andersen, M. D., Shaffer, J., Jennings, P. A., and Adams, J. A. (2001) Structural characterization of protein kinase A as a function of nucleotide binding: Hydrogen-deuterium exchange studies using MALDI-TOF MS detection. J. Biol. Chem. 14204-14211.
-
(2001)
J. Biol. Chem
, pp. 14204-14211
-
-
Andersen, M.D.1
Shaffer, J.2
Jennings, P.A.3
Adams, J.A.4
-
59
-
-
0028941877
-
Backbone dynamic of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme
-
Mandel, A. M., Akke, M., and Palmer, A. G. (1995) Backbone dynamic of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme. J. Mol. Biol. 246, 144-163.
-
(1995)
J. Mol. Biol
, vol.246
, pp. 144-163
-
-
Mandel, A.M.1
Akke, M.2
Palmer, A.G.3
-
60
-
-
3042763969
-
Prediction of methyl-side chain dynamics in proteins
-
Ming, D., and Bruschweiler, R. (2004) Prediction of methyl-side chain dynamics in proteins. J. Biomol. NMR 29, 363-368.
-
(2004)
J. Biomol. NMR
, vol.29
, pp. 363-368
-
-
Ming, D.1
Bruschweiler, R.2
-
61
-
-
0001528720
-
Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules
-
Fraczkiewicz, R., and Braun, W. (1998) Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules. J. Comput. Chem. 19, 319-333.
-
(1998)
J. Comput. Chem
, vol.19
, pp. 319-333
-
-
Fraczkiewicz, R.1
Braun, W.2
-
62
-
-
33747859373
-
RosettaDesign server for protein design
-
Liu, Y., and Kuhlman, B. (2006) RosettaDesign server for protein design. Nucleic Acids Res. 34, 238.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 238
-
-
Liu, Y.1
Kuhlman, B.2
-
63
-
-
0034724392
-
Millisecond time scale conformational flexibility in a hyperthermophile protein at ambient temperature
-
Hernandez, G., Jenney, F. E., Jr., Adams, M. W., and LeMaster, D. M. (2000) Millisecond time scale conformational flexibility in a hyperthermophile protein at ambient temperature. Proc. Natl. Acad. Sci. U.S.A. 97, 3166-3170.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A
, vol.97
, pp. 3166-3170
-
-
Hernandez, G.1
Jenney Jr., F.E.2
Adams, M.W.3
LeMaster, D.M.4
-
64
-
-
31344440894
-
Effects of co-operative ligand binding on protein amide NH hydrogen exchange
-
Polshakov, V. I., Birdsall, B., and Feeney, J. (2006) Effects of co-operative ligand binding on protein amide NH hydrogen exchange. J. Mol. Biol. 356, 886-903.
-
(2006)
J. Mol. Biol
, vol.356
, pp. 886-903
-
-
Polshakov, V.I.1
Birdsall, B.2
Feeney, J.3
-
65
-
-
0031893269
-
The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect
-
Xu, J., Baase, W. A., Baldwin, E., and Matthews, B. W. (1998) The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect. Protein Sci. 7, 158-177.
-
(1998)
Protein Sci
, vol.7
, pp. 158-177
-
-
Xu, J.1
Baase, W.A.2
Baldwin, E.3
Matthews, B.W.4
-
66
-
-
0030580089
-
Structure-based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors
-
Hilser, V. J., and Freire, E. (1996) Structure-based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors. J. Mol. Biol. 262, 756-772.
-
(1996)
J. Mol. Biol
, vol.262
, pp. 756-772
-
-
Hilser, V.J.1
Freire, E.2
-
67
-
-
1442351134
-
Equilibrium hydrogen exchange reveals extensive hydrogen bonded secondary structure in the on-pathway intermediate of Im7
-
Gorski, S. A., Le Duff, C. S., Capaldi, A. P., Kalverda, A. P., Beddard, G. S., Moore, G. R., and Radford, S. E. (2004) Equilibrium hydrogen exchange reveals extensive hydrogen bonded secondary structure in the on-pathway intermediate of Im7. J. Mol. Biol. 337, 183-193.
-
(2004)
J. Mol. Biol
, vol.337
, pp. 183-193
-
-
Gorski, S.A.1
Le Duff, C.S.2
Capaldi, A.P.3
Kalverda, A.P.4
Beddard, G.S.5
Moore, G.R.6
Radford, S.E.7
-
68
-
-
34447503697
-
Conformational entropy in molecular recognition by proteins
-
Frederick, K. K., Marlow, M. S., Valentine, K. G., and Wand, A. J. (2007) Conformational entropy in molecular recognition by proteins. Nature 448, 325-329.
-
(2007)
Nature
, vol.448
, pp. 325-329
-
-
Frederick, K.K.1
Marlow, M.S.2
Valentine, K.G.3
Wand, A.J.4
-
69
-
-
0345707599
-
Increased rigidity of eglin c at acidic pH: Evidence from NMR spin relaxation and MD simulations
-
Hu, H., Clarkson, M. W., Hermans, J., and Lee, A. L. (2003) Increased rigidity of eglin c at acidic pH: Evidence from NMR spin relaxation and MD simulations. Biochemistry 42, 13856-13868.
-
(2003)
Biochemistry
, vol.42
, pp. 13856-13868
-
-
Hu, H.1
Clarkson, M.W.2
Hermans, J.3
Lee, A.L.4
-
70
-
-
0023643147
-
The high-resolution X-ray crystal structure of the complex formed between subtilisin Carlsberg and eglin c, an elastase inhibitor from the leech Hirudo medicinalis. Structural analysis, subtilisin structure and interface geometry
-
Bode, W., Papamokos, E., and Musil, D. (1987) The high-resolution X-ray crystal structure of the complex formed between subtilisin Carlsberg and eglin c, an elastase inhibitor from the leech Hirudo medicinalis. Structural analysis, subtilisin structure and interface geometry. Eur. J. Biochem. 166, 673-692.
-
(1987)
Eur. J. Biochem
, vol.166
, pp. 673-692
-
-
Bode, W.1
Papamokos, E.2
Musil, D.3
|