-
1
-
-
0021658956
-
Allostery without conformational change - a plausible model
-
Cooper A., and Dryden D.T.F. Allostery without conformational change - a plausible model. Eur. Biophys. J. 11 (1984) 103-109
-
(1984)
Eur. Biophys. J.
, vol.11
, pp. 103-109
-
-
Cooper, A.1
Dryden, D.T.F.2
-
2
-
-
0034760077
-
Dynamic activation of protein function: a view emerging from NMR spectroscopy
-
Wand A.J. Dynamic activation of protein function: a view emerging from NMR spectroscopy. Nature Struct. Biol. 8 (2001) 926-931
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 926-931
-
-
Wand, A.J.1
-
4
-
-
0033988897
-
Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex
-
Lee A.L., Kinnear S.A., and Wand A.J. Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex. Nature Struct. Biol. 7 (2000) 72-77
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 72-77
-
-
Lee, A.L.1
Kinnear, S.A.2
Wand, A.J.3
-
5
-
-
0030042698
-
Correlation between dynamics and high affinity binding in an SH2 domain interaction
-
Kay L.E., Muhandiram D.R., Farrow N.A., Aubin Y., and Forman-Kay J.D. Correlation between dynamics and high affinity binding in an SH2 domain interaction. Biochemistry 35 (1996) 361-368
-
(1996)
Biochemistry
, vol.35
, pp. 361-368
-
-
Kay, L.E.1
Muhandiram, D.R.2
Farrow, N.A.3
Aubin, Y.4
Forman-Kay, J.D.5
-
6
-
-
0031910945
-
Correlation between binding and dynamics at SH2 domain interfaces
-
Kay L.E., Muhandiram D.R., Wolf G., Shoelson S.E., and Forman-Kay J.D. Correlation between binding and dynamics at SH2 domain interfaces. Nature Struct. Biol. 5 (1998) 156-163
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 156-163
-
-
Kay, L.E.1
Muhandiram, D.R.2
Wolf, G.3
Shoelson, S.E.4
Forman-Kay, J.D.5
-
7
-
-
0036385729
-
Side-chain dynamics of the SAP SH2 domain correlate with a binding hot spot and a region with conformational plasticity
-
Finerty P.J., Muhandiram R., and Forman-Kay J.D. Side-chain dynamics of the SAP SH2 domain correlate with a binding hot spot and a region with conformational plasticity. J. Mol. Biol. 322 (2002) 605-620
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 605-620
-
-
Finerty, P.J.1
Muhandiram, R.2
Forman-Kay, J.D.3
-
8
-
-
0035901519
-
An increase in side chain entropy facilitates effector binding: NMR characterization of the side chain methyl group dynamics in Cdc42Hs
-
Loh A.P., Pawley N., Nicholson L.K., and Oswald R.E. An increase in side chain entropy facilitates effector binding: NMR characterization of the side chain methyl group dynamics in Cdc42Hs. Biochemistry 40 (2001) 4590-4600
-
(2001)
Biochemistry
, vol.40
, pp. 4590-4600
-
-
Loh, A.P.1
Pawley, N.2
Nicholson, L.K.3
Oswald, R.E.4
-
9
-
-
0345832242
-
Effect of cofactor binding and loop conformation on side chain methyl dynamics in dihydrofolate reductase
-
Schnell J.R., Dyson H.J., and Wright P.E. Effect of cofactor binding and loop conformation on side chain methyl dynamics in dihydrofolate reductase. Biochemistry 43 (2004) 374-383
-
(2004)
Biochemistry
, vol.43
, pp. 374-383
-
-
Schnell, J.R.1
Dyson, H.J.2
Wright, P.E.3
-
10
-
-
0347753736
-
Ligand-dependent dynamics and intramolecular signaling in a PDZ domain
-
Fuentes E.J., Der C.J., and Lee A.L. Ligand-dependent dynamics and intramolecular signaling in a PDZ domain. J. Mol. Biol. 335 (2004) 1105-1115
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 1105-1115
-
-
Fuentes, E.J.1
Der, C.J.2
Lee, A.L.3
-
11
-
-
0345707599
-
Increased rigidity of Eglin c at acidic pH: evidence from NMR spin relaxation and MD simulations
-
Hu H., Clarkson M.W., Hermans J., and Lee A.L. Increased rigidity of Eglin c at acidic pH: evidence from NMR spin relaxation and MD simulations. Biochemistry 42 (2003) 13856-13868
-
(2003)
Biochemistry
, vol.42
, pp. 13856-13868
-
-
Hu, H.1
Clarkson, M.W.2
Hermans, J.3
Lee, A.L.4
-
12
-
-
0032744041
-
Effect of hydrophobic core packing on sidechain dynamics
-
Johnson E.C., and Handel T.M. Effect of hydrophobic core packing on sidechain dynamics. J. Biomol. NMR 15 (1999) 135-143
-
(1999)
J. Biomol. NMR
, vol.15
, pp. 135-143
-
-
Johnson, E.C.1
Handel, T.M.2
-
14
-
-
1842559316
-
The response of internal dynamics to hydrophobic core mutations in the SH3 domain from the Fyn tyrosine kinase
-
Mittermaier A., and Kay L.E. The response of internal dynamics to hydrophobic core mutations in the SH3 domain from the Fyn tyrosine kinase. Protein Sci. 13 (2004) 1088-1099
-
(2004)
Protein Sci.
, vol.13
, pp. 1088-1099
-
-
Mittermaier, A.1
Kay, L.E.2
-
15
-
-
4744347909
-
Long-range dynamic effects of point mutations propagate through side chains in the serine protease inhibitor Eglin c
-
Clarkson M.W., Lee A.L., Hu H., and Hermans J. Long-range dynamic effects of point mutations propagate through side chains in the serine protease inhibitor Eglin c. Biochemistry 43 (2004) 12448-12458
-
(2004)
Biochemistry
, vol.43
, pp. 12448-12458
-
-
Clarkson, M.W.1
Lee, A.L.2
Hu, H.3
Hermans, J.4
-
16
-
-
0842283895
-
Hydrophobic core fluidity of homologous protein domains: relation of side-chain dynamics to core composition and packing
-
Best R.B., Rutherford T.J., Freund S.M.V., and Clarke J. Hydrophobic core fluidity of homologous protein domains: relation of side-chain dynamics to core composition and packing. Biochemistry 43 (2004) 1145-1155
-
(2004)
Biochemistry
, vol.43
, pp. 1145-1155
-
-
Best, R.B.1
Rutherford, T.J.2
Freund, S.M.V.3
Clarke, J.4
-
17
-
-
25444519195
-
Backbone and side chain dynamics of mutant calmodulin-peptide complexes
-
Igumenova T.I., Lee A.L., and Wand A.J. Backbone and side chain dynamics of mutant calmodulin-peptide complexes. Biochemistry 44 (2005) 12627-12639
-
(2005)
Biochemistry
, vol.44
, pp. 12627-12639
-
-
Igumenova, T.I.1
Lee, A.L.2
Wand, A.J.3
-
18
-
-
0037493100
-
Organization of signaling complexes by PDZ-domain scaffold proteins
-
Zhang M., and Wang W. Organization of signaling complexes by PDZ-domain scaffold proteins. Acc. Chem. Res. 36 (2003) 530-538
-
(2003)
Acc. Chem. Res.
, vol.36
, pp. 530-538
-
-
Zhang, M.1
Wang, W.2
-
19
-
-
0036301446
-
Solution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the beta 2-beta 3 loop to PDZ domain-ligand interactions
-
Kozlov G., Banville D., Gehring K., and Ekiel I. Solution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the beta 2-beta 3 loop to PDZ domain-ligand interactions. J. Mol. Biol. 320 (2002) 813-820
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 813-820
-
-
Kozlov, G.1
Banville, D.2
Gehring, K.3
Ekiel, I.4
-
20
-
-
0033536602
-
Evolutionarily conserved pathways of energetic connectivity in protein families
-
Lockless S.W., and Ranganathan R. Evolutionarily conserved pathways of energetic connectivity in protein families. Science 286 (1999) 295-299
-
(1999)
Science
, vol.286
, pp. 295-299
-
-
Lockless, S.W.1
Ranganathan, R.2
-
22
-
-
33646719091
-
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules: 1. Theory and range of validity
-
Lipari G., and Szabo A. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules: 1. Theory and range of validity. J. Am. Chem. Soc. 104 (1982) 4546-4559
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4546-4559
-
-
Lipari, G.1
Szabo, A.2
-
23
-
-
33845553743
-
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results
-
Lipari G., and Szabo A. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results. J. Am. Chem. Soc. 104 (1982) 4559-4570
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 4559-4570
-
-
Lipari, G.1
Szabo, A.2
-
25
-
-
0033620360
-
13C NMR relaxation techniques for the study of protein methyl group dynamics in solution
-
13C NMR relaxation techniques for the study of protein methyl group dynamics in solution. J. Am. Chem. Soc. 121 (1999) 2891-2902
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 2891-2902
-
-
Lee, A.L.1
Flynn, P.F.2
Wand, A.J.3
-
26
-
-
23344451429
-
Relating side-chain mobility in proteins to rotameric transitions: insights from molecular dynamics simulations and NMR
-
Hu H., Hermans J., and Lee A.L. Relating side-chain mobility in proteins to rotameric transitions: insights from molecular dynamics simulations and NMR. J. Biomol. NMR 32 (2005) 151-162
-
(2005)
J. Biomol. NMR
, vol.32
, pp. 151-162
-
-
Hu, H.1
Hermans, J.2
Lee, A.L.3
-
27
-
-
0346220393
-
The role of dynamics in allosteric regulation
-
Kern D., and Zuiderweg E.R. The role of dynamics in allosteric regulation. Curr. Opin. Struct. Biol. 13 (2003) 748-757
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 748-757
-
-
Kern, D.1
Zuiderweg, E.R.2
-
28
-
-
33646776723
-
Reconciling the "old" and "new" views of protein allostery: a molecular simulation study of chemotaxis Y protein (CheY)
-
Formaneck M.S., Ma L., and Cui Q. Reconciling the "old" and "new" views of protein allostery: a molecular simulation study of chemotaxis Y protein (CheY). Proteins 63 (2006) 846-867
-
(2006)
Proteins
, vol.63
, pp. 846-867
-
-
Formaneck, M.S.1
Ma, L.2
Cui, Q.3
-
29
-
-
33746911627
-
Dynamic coupling and allosteric behavior in a non-allosteric protein
-
Clarkson M.W., Gilmore S.A., Edgell M.H., and Lee A.L.L. Dynamic coupling and allosteric behavior in a non-allosteric protein. Biochemistry 45 (2006) 7693-7699
-
(2006)
Biochemistry
, vol.45
, pp. 7693-7699
-
-
Clarkson, M.W.1
Gilmore, S.A.2
Edgell, M.H.3
Lee, A.L.L.4
-
30
-
-
22444450449
-
Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion
-
Ota N., and Agard D.A. Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion. J. Mol. Biol. 351 (2005) 345-354
-
(2005)
J. Mol. Biol.
, vol.351
, pp. 345-354
-
-
Ota, N.1
Agard, D.A.2
-
31
-
-
0021504608
-
The use of double mutants to detect structural-changes in the active-site of the tyrosyl-transfer RNA-synthetase (Bacillus stearothermophilus)
-
Carter P.J., Winter G., Wilkinson A.J., and Fersht A.R. The use of double mutants to detect structural-changes in the active-site of the tyrosyl-transfer RNA-synthetase (Bacillus stearothermophilus). Cell 38 (1984) 835-840
-
(1984)
Cell
, vol.38
, pp. 835-840
-
-
Carter, P.J.1
Winter, G.2
Wilkinson, A.J.3
Fersht, A.R.4
-
32
-
-
0021891887
-
Effects of site-specific amino-acid modification on protein interactions and biological function
-
Ackers G.K., and Smith F.R. Effects of site-specific amino-acid modification on protein interactions and biological function. Annu. Rev. Biochem. 54 (1985) 597-629
-
(1985)
Annu. Rev. Biochem.
, vol.54
, pp. 597-629
-
-
Ackers, G.K.1
Smith, F.R.2
-
33
-
-
0025126043
-
Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins
-
Horovitz A., and Fersht A.R. Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins. J. Mol. Biol. 214 (1990) 597-629
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 597-629
-
-
Horovitz, A.1
Fersht, A.R.2
-
34
-
-
78651189765
-
On the nature of allosteric transitions: a plausible model
-
Monod J., Wyman J., and Changeux J.P. On the nature of allosteric transitions: a plausible model. J. Mol. Biol. 12 (1965) 88-118
-
(1965)
J. Mol. Biol.
, vol.12
, pp. 88-118
-
-
Monod, J.1
Wyman, J.2
Changeux, J.P.3
-
35
-
-
0035937443
-
Two-state allosteric behavior in a single-domain signaling protein
-
Volkman B.F., Lipson D., Wemmer D.E., and Kern D. Two-state allosteric behavior in a single-domain signaling protein. Science 291 (2001) 2429-2433
-
(2001)
Science
, vol.291
, pp. 2429-2433
-
-
Volkman, B.F.1
Lipson, D.2
Wemmer, D.E.3
Kern, D.4
-
36
-
-
21244440196
-
Conservation of μs-ms enzyme motions in the apo- and substrate-mimicked state
-
Beach H., Cole R., Gill M.L., and Loria J.P. Conservation of μs-ms enzyme motions in the apo- and substrate-mimicked state. J. Am. Chem. Soc. 127 (2005) 9167-9176
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 9167-9176
-
-
Beach, H.1
Cole, R.2
Gill, M.L.3
Loria, J.P.4
-
37
-
-
27744499156
-
Intrinsic dynamics of an enzyme underlies catalysis
-
Eisenmesser E.Z., Millet O., Labeikovsky W., Korzhnev D.M., Wolf-Watz M., Bosco D.A., et al. Intrinsic dynamics of an enzyme underlies catalysis. Nature 438 (2005) 117-121
-
(2005)
Nature
, vol.438
, pp. 117-121
-
-
Eisenmesser, E.Z.1
Millet, O.2
Labeikovsky, W.3
Korzhnev, D.M.4
Wolf-Watz, M.5
Bosco, D.A.6
-
38
-
-
0035918517
-
Energetic determinants of internal motif recognition by PDZ domains
-
Harris B.Z., Hillier B.J., and Lim W.A. Energetic determinants of internal motif recognition by PDZ domains. Biochemistry 40 (2001) 5921-5930
-
(2001)
Biochemistry
, vol.40
, pp. 5921-5930
-
-
Harris, B.Z.1
Hillier, B.J.2
Lim, W.A.3
-
39
-
-
0000751590
-
Effects of chemical exchange on NMR spectra
-
Roberts G.C.K. (Ed), Oxford University Press, Oxford, UK
-
Lian L., and Roberts G.C.K. Effects of chemical exchange on NMR spectra. In: Roberts G.C.K. (Ed). NMR of Macromolecules. A Practical Approach (1993), Oxford University Press, Oxford, UK
-
(1993)
NMR of Macromolecules. A Practical Approach
-
-
Lian, L.1
Roberts, G.C.K.2
-
40
-
-
0038275885
-
High-precision, high-throughput stability determinations facilitated by robotics and a semi-automated titrating fluorometer
-
Edgell M.H., Sims D.A., Pielak G.J., and Yi F. High-precision, high-throughput stability determinations facilitated by robotics and a semi-automated titrating fluorometer. Biochemistry 42 (2003) 7587-7593
-
(2003)
Biochemistry
, vol.42
, pp. 7587-7593
-
-
Edgell, M.H.1
Sims, D.A.2
Pielak, G.J.3
Yi, F.4
-
42
-
-
0033029875
-
Assessing potential bias in the determination of rotational correlation times of proteins by NMR relaxation
-
Lee A.L., and Wand A.J. Assessing potential bias in the determination of rotational correlation times of proteins by NMR relaxation. J. Biomol. NMR 13 (1999) 101-112
-
(1999)
J. Biomol. NMR
, vol.13
, pp. 101-112
-
-
Lee, A.L.1
Wand, A.J.2
-
43
-
-
0037137214
-
Temperature dependence of the internal dynamics of a calmodulin-peptide complex
-
Lee A.L., Sharp K.A., Kranz J.K., Song X.J., and Wand A.J. Temperature dependence of the internal dynamics of a calmodulin-peptide complex. Biochemistry 41 (2002) 13814-13825
-
(2002)
Biochemistry
, vol.41
, pp. 13814-13825
-
-
Lee, A.L.1
Sharp, K.A.2
Kranz, J.K.3
Song, X.J.4
Wand, A.J.5
-
44
-
-
0034645726
-
Solution structure and backbone dynamics of the second PDZ domain of postsynaptic density-95
-
Tochio H., Hung F., Li M., Bredt D.S., and Zhang M. Solution structure and backbone dynamics of the second PDZ domain of postsynaptic density-95. J. Mol. Biol. 295 (2000) 225-237
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 225-237
-
-
Tochio, H.1
Hung, F.2
Li, M.3
Bredt, D.S.4
Zhang, M.5
-
45
-
-
0036300569
-
Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL
-
Walma T., Spronk C., Tessari M., Aelen J., Schepens J., Hendriks W., and Vuister G.W. Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL. J. Mol. Biol. 316 (2002) 1101-1110
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 1101-1110
-
-
Walma, T.1
Spronk, C.2
Tessari, M.3
Aelen, J.4
Schepens, J.5
Hendriks, W.6
Vuister, G.W.7
-
46
-
-
1642493671
-
A closed binding pocket and global destabilization modify the binding properties of an alternatively spliced form of the second PDZ domain of PTP-BL
-
Walma T., Aelen J., Nabuurs S.B., Oostendorp M., van den Berk L., Hendriks W., and Vuister G.W. A closed binding pocket and global destabilization modify the binding properties of an alternatively spliced form of the second PDZ domain of PTP-BL. Structure (Camb) 12 (2004) 11-20
-
(2004)
Structure (Camb)
, vol.12
, pp. 11-20
-
-
Walma, T.1
Aelen, J.2
Nabuurs, S.B.3
Oostendorp, M.4
van den Berk, L.5
Hendriks, W.6
Vuister, G.W.7
-
47
-
-
0028941877
-
Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme
-
Mandel A.M., Akke M., and Palmer III A.G. Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme. J. Mol. Biol. 246 (1995) 144-163
-
(1995)
J. Mol. Biol.
, vol.246
, pp. 144-163
-
-
Mandel, A.M.1
Akke, M.2
Palmer III, A.G.3
-
48
-
-
0032042263
-
Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra
-
Ottiger M., Delaglio F., and Bax A. Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra. J. Magn. Reson. 131 (1998) 373-378
-
(1998)
J. Magn. Reson.
, vol.131
, pp. 373-378
-
-
Ottiger, M.1
Delaglio, F.2
Bax, A.3
-
49
-
-
0037551646
-
Alignment of biological bacromolecules in novel nonionic liquid crystalline media for NMR experiments
-
Ruckert M., and Otting G. Alignment of biological bacromolecules in novel nonionic liquid crystalline media for NMR experiments. J. Am. Chem. Soc. 122 (2000) 7793-7797
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 7793-7797
-
-
Ruckert, M.1
Otting, G.2
-
50
-
-
0027636003
-
A simple and sensitive experiment for measurement of Jcc couplings between backbone carbonyl and methyl carbons in isotopically enriched proteins
-
Grzesiek S., Vuister G.W., and Bax A. A simple and sensitive experiment for measurement of Jcc couplings between backbone carbonyl and methyl carbons in isotopically enriched proteins. J. Biomol. NMR 3 (1993) 487-493
-
(1993)
J. Biomol. NMR
, vol.3
, pp. 487-493
-
-
Grzesiek, S.1
Vuister, G.W.2
Bax, A.3
-
52
-
-
0029881007
-
MOLMOL: a program for the visualization and analysis of macromolecular structures
-
Koradi R., Billeter M., and Wuthrich K. MOLMOL: a program for the visualization and analysis of macromolecular structures. J. Mol. Graph. 14 (1996) 51-55
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
|