-
1
-
-
0035782661
-
Review: Protein design-where we were, where we are, where we're going
-
Pokala,N. and Handel,T.M. (2001) Review: protein design-where we were, where we are, where we're going. J. Struct. Biol., 134, 269-281.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 269-281
-
-
Pokala, N.1
Handel, T.M.2
-
2
-
-
4143150944
-
Advances in computational protein design
-
Park,S., Yang,X. and Saven,J.G. (2004) Advances in computational protein design. Curr. Opin. Struct. Biol., 14, 487-494.
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 487-494
-
-
Park, S.1
Yang, X.2
Saven, J.G.3
-
4
-
-
0030793767
-
De novo protein design: Fully automated sequence selection
-
Dahiyat,B.I. and Mayo,S.L. (1997) De novo protein design: fully automated sequence selection. Science, 278, 82-87.
-
(1997)
Science
, vol.278
, pp. 82-87
-
-
Dahiyat, B.I.1
Mayo, S.L.2
-
5
-
-
4143115810
-
Periplasmic binding proteins: A versatile superfamily for protein engineering
-
Dwyer,M.A. and Hellinga,H.W. (2004) Periplasmic binding proteins: a versatile superfamily for protein engineering. Curr. Opin. Struct. Biol., 14, 495-504.
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 495-504
-
-
Dwyer, M.A.1
Hellinga, H.W.2
-
6
-
-
0032553587
-
High-resolution protein design with backbone freedom
-
Harbury,P.B., Plecs,J.J., Tidor,B., Alber,T. and Kim,P.S. (1998) High-resolution protein design with backbone freedom. Science, 282, 1462-1467.
-
(1998)
Science
, vol.282
, pp. 1462-1467
-
-
Harbury, P.B.1
Plecs, J.J.2
Tidor, B.3
Alber, T.4
Kim, P.S.5
-
7
-
-
1642464839
-
Protein structure prediction using Rosetta
-
Rohl,C.A., Strauss,C.E., Misura,K.M. and Baker,D. (2004) Protein structure prediction using Rosetta. Meth. Enzymol., 383, 66-93.
-
(2004)
Meth. Enzymol.
, vol.383
, pp. 66-93
-
-
Rohl, C.A.1
Strauss, C.E.2
Misura, K.M.3
Baker, D.4
-
8
-
-
0034641749
-
Native protein sequences are close to optimal for their structures
-
Kuhlman,B. and Baker,D. (2000) Native protein sequences are close to optimal for their structures. Proc. Natl Acad. Sci. USA, 97, 10383-10388.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 10383-10388
-
-
Kuhlman, B.1
Baker, D.2
-
9
-
-
0041387567
-
A large scale test of computational protein design: Folding and stability of nine completely redesigned globular proteins
-
Dantas,G., Kuhlman,B., Callender,D., Wong,M. and Baker,D. (2003) A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins. J. Mol. Biol., 332, 449-460.
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 449-460
-
-
Dantas, G.1
Kuhlman, B.2
Callender, D.3
Wong, M.4
Baker, D.5
-
10
-
-
27144495057
-
E2 conjugating enzymes must disengage from their E1 enzymes before E3-dependent ubiquitin and ubiquitin-like transfer
-
Eletr,Z.M., Huang,D.T., Duda,D.M., Schulman,B.A. and Kuhlman,B. (2005) E2 conjugating enzymes must disengage from their E1 enzymes before E3-dependent ubiquitin and ubiquitin-like transfer. Nature Struct. Mol. Biol., 12, 933-934.
-
(2005)
Nature Struct. Mol. Biol.
, vol.12
, pp. 933-934
-
-
Eletr, Z.M.1
Huang, D.T.2
Duda, D.M.3
Schulman, B.A.4
Kuhlman, B.5
-
11
-
-
31944435091
-
Computational design of a single amino acid sequence that can switch between two distinct protein folds
-
Ambroggio,X.I. and Kuhlman,B. (2006) Computational design of a single amino acid sequence that can switch between two distinct protein folds. J. Am. Chem. Soc., 128, 1154-1161.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 1154-1161
-
-
Ambroggio, X.I.1
Kuhlman, B.2
-
12
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
Kuhlman,B., Dantas,G., Ireton,G.C., Varani,G., Stoddard,B.L. and Baker,D. (2003) Design of a novel globular protein fold with atomic-level accuracy. Science, 302, 1364-1368.
-
(2003)
Science
, vol.302
, pp. 1364-1368
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.C.3
Varani, G.4
Stoddard, B.L.5
Baker, D.6
-
13
-
-
0033135638
-
Effective energy function for proteins in solution
-
Lazaridis,T. and Karplus,M. (1999) Effective energy function for proteins in solution. Proteins, 35, 133-152.
-
(1999)
Proteins
, vol.35
, pp. 133-152
-
-
Lazaridis, T.1
Karplus, M.2
-
14
-
-
0037470581
-
An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes
-
Kortemme,T., Morozov,A.V. and Baker,D. (2003) An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes. J. Mol. Biol., 326, 1239-1259.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 1239-1259
-
-
Kortemme, T.1
Morozov, A.V.2
Baker, D.3
-
15
-
-
1842326139
-
Bayesian statistical analysis of protein side-chain rotamer preferences
-
Dunbrack,R.L.Jr and, Cohen,F.E. (1997) Bayesian statistical analysis of protein side-chain rotamer preferences. Protein Sci., 6, 1661-1681.
-
(1997)
Protein Sci.
, vol.6
, pp. 1661-1681
-
-
Dunbrack Jr., R.L.1
Cohen, F.E.2
-
16
-
-
0032929780
-
Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins
-
Simons,K.T., Ruczinski,I., Kooperberg,C., Fox,B.A., Bystroff,C. and Baker,D. (1999) Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins. Proteins, 34, 82-95.
-
(1999)
Proteins
, vol.34
, pp. 82-95
-
-
Simons, K.T.1
Ruczinski, I.2
Kooperberg, C.3
Fox, B.A.4
Bystroff, C.5
Baker, D.6
-
17
-
-
18244373419
-
Computational thermostabilization of an enzyme
-
Korkegian,A., Black,M.E., Baker,D. and Stoddard,B.L. (2005) Computational thermostabilization of an enzyme. Science, 308, 857-860.
-
(2005)
Science
, vol.308
, pp. 857-860
-
-
Korkegian, A.1
Black, M.E.2
Baker, D.3
Stoddard, B.L.4
-
18
-
-
0034964196
-
Computer-based redesign of a protein folding pathway
-
Nauli,S., Kuhlman,B. and Baker,D. (2001) Computer-based redesign of a protein folding pathway. Nature Struct. Biol., 8, 602-605.
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 602-605
-
-
Nauli, S.1
Kuhlman, B.2
Baker, D.3
-
19
-
-
0141705410
-
Using protein design for homology detection and active site searches
-
Pei,J., Dokholyan,N.V., Shakhnovich,E.I. and Grishin,N.V. (2003) Using protein design for homology detection and active site searches. Proc. Natl Acad. Sci. USA, 100, 11361-11366.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 11361-11366
-
-
Pei, J.1
Dokholyan, N.V.2
Shakhnovich, E.I.3
Grishin, N.V.4
-
20
-
-
12544260150
-
Recapitulation of protein family divergence using flexible backbone protein design
-
Saunders,C.T. and Baker,D. (2005) Recapitulation of protein family divergence using flexible backbone protein design. J. Mol. Biol., 346, 631-644.
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 631-644
-
-
Saunders, C.T.1
Baker, D.2
-
21
-
-
1842577654
-
Computational redesign of protein-protein interaction specificity
-
Kortemme,T., Joachimiak,L.A., Bullock,A.N., Schuler,A.D., Stoddard,B.L. and Baker,D. (2004) Computational redesign of protein-protein interaction specificity. Nature Struct. Mol. Biol., 11, 371-379.
-
(2004)
Nature Struct. Mol. Biol.
, vol.11
, pp. 371-379
-
-
Kortemme, T.1
Joachimiak, L.A.2
Bullock, A.N.3
Schuler, A.D.4
Stoddard, B.L.5
Baker, D.6
-
22
-
-
0033900165
-
Computational design of an integrin I domain stabilized in the open high affinity conformation
-
Shimaoka,M., Shifman,J.M., Jing,H., Takagi,J., Mayo,S.L. and Springer,T.A. (2000) Computational design of an integrin I domain stabilized in the open high affinity conformation. Nature Struct. Biol., 7, 674-678.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 674-678
-
-
Shimaoka, M.1
Shifman, J.M.2
Jing, H.3
Takagi, J.4
Mayo, S.L.5
Springer, T.A.6
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