Proteomic strategies to elucidate pathogenic mechanisms of spirochetes

Proteomics - Clinical Applications

Volumn 1, Issue 9, 2007, Pages 1185-1197

  Nally, Jarlath E ^a   Whitelegge, Julian P ^b   Carroll, James A ^c  

^a UNIVERSITY COLLEGE DUBLIN   (Ireland)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE   (United States)

Author keywords

Borrelia; In vivo; Leptospira; Pathogenesis; Spirochetes

Indexed keywords

BACTERIAL PROTEIN; CYTOPLASM PROTEIN; LIPOPROTEIN; OUTER MEMBRANE PROTEIN; TRITON X 100;

ACUTE DISEASE; BACTERIAL GENOME; BACTERIUM ISOLATION; CHRONIC DISEASE; DISEASE TRANSMISSION; ENVIRONMENTAL FACTOR; HUMAN; IMMUNOBLOTTING; IN VIVO CULTURE; LEPTOSPIRA INTERROGANS; LEPTOSPIROSIS; LYME DISEASE; MASS SPECTROMETRY; NONHUMAN; PATHOGENESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEOMICS; REVIEW; SIGNAL TRANSDUCTION; SPIROCHETE; SPIROCHETE INFECTION; TWO DIMENSIONAL ELECTROPHORESIS; VALIDATION PROCESS;

BORRELIA; LEPTOSPIRA;

EID: 38349152215     PISSN: 18628346     EISSN: None     Source Type: Journal    
DOI: 10.1002/prca.200700090     Document Type: Review

References (141)

1. Canale-Parola, E., Bacteriol. Rev. 1977, 41, 181-204.
2. Woese, C. R., Microbiol. Rev. 1987, 51, 221-271.
3. Charon, N. W., Goldstein, S. F, Annu. Rev. Genet. 2002, 36, 47-73.
4. Holt, S. C., Microbiol. Rev. 1978, 42, 114-160.
5. Nowalk, A. J., Nolder, C., Clifton, D. R., Carroll, J. A., Proteomics 2006, 6, 2121-2134.
6. Knight, C. G., Kassen, R., Hebestreit, H., Rainey, P. B., Proc. Natl. Acad. Sci. USA 2004, 101, 8390-8395.
7. Hartskeerl, R. A., Indian J. Med. Microbiol. 2006, 24, 309.
8. Nally, J. E., Chantranuwat, C., Wu, X. Y., Fishbein, M. C. et al., Am. J. Pathol. 2004, 164, 1115-1127.
9. Nally, J. E., Chow, E., Fishbein, M. C., Blanco, D. R., Lovett, M. A., Infect. Immun. 2005, 73, 3251-3260.
10. Faine, S., Adler, B., Bolin, C., Perolat, P., Leptospira and Leptospirosis, MediSci, Melbourne, Australia 1999.
11. Bharti, A. R., Nally, J. E., Ricaldi, J. N., Matthias, M. A. et al., Lancet Infect Dis 2003, 3, 757-771.
12. McBride, A. J., Athanazio, D. A., Reis, M. G., Ko, A. I., Curr Opin Infect. Dis. 2005, 78, 376-386.
13. Schmid, G. P, Yale J. Biol. Med. 1984, 57, 617-618.
14. Carlberg, H., Naito, S., J. Dermatol. 1991, 18, 125-142.
15. Ai, C. X., Wen, Y. X., Zhang, Y. G., Wang, S. S. et al., Ann. NY Acad. Sci. 1988, 539, 302-313.
16. Milch, L. J., Barbour, A. G., J. Infect. Dis. 1989, 760, 351-353.
17. Steere, A. C., Craft, J. E., Hutchinson, G. J., Newman, J. H. et al., Ann. Intern. Med. 1983, 99, 76-82.
18. Burgdorfer, W., Barbour, A. G., Hayes, S. F., Benach, J. L. et al., Science 1982, 216, 1317-1319.
19. Anderson, J. F., Johnson, R. C., Magnarelli, L. A., Hyde, F. W., J. Clin. Microbiol. 1985, 22, 36-38.
20. Steere, A. C., N. Engl. J. Med. 1989, 321, 586-596.
21. Lo, M., Bulach, D. M., Powell, D. R., Haake, D. A. et al., Infect. Immun. 2006, 74, 5848-5859.
22. Qin, J. H., Shang, Y. Y., Zhang, Z. M., Shi, Y. Z. et al., BMC Microbiol. 2006, 6, 51.
23. Brooks, C. S., Hefty, P. S., Jolliff, S. E., Akins, D. R., Infect. Immun. 2003, 77, 3371-3383.
24. Revel, A. T., Talaat, A. M., Norgard, M. V., Proc. Natl. Acad. Sci. USA 2002, 99, 1562-1567.
25. Narasimhan, S., Camaino, M. J., Liang, F. T., Santiago, F. et al., Proc. Natl. Acad Sci. USA 2003, 100, 15953-15958.
26. Ojaimi, C., Brooks, C., Akins, D., Casjens, S. et al., Methods Enzymol. 2002, 358, 165-177.
27. Ojaimi, C., Brooks, C., Casjens, S., Rosa, P. et al., Infect. Immun. 2003, 71, 1689-1705.
28. Tokarz, R., Anderton, J. M., Katone, L. I., Benach, J. L., Infect. Immun. 2004, 72, 5419-5432.
29. Nascimento, A. L., Ko, A. I., Martins, E. A., Monteiro-Vitorello, C. B. et al., J. Bacteriol. 2004, 186, 2164-2172.
30. Nascimento, A. L., Verjovski-Almeida, S., Van Sluys, M. A., Monteiro-Vitorello, C. B. et al., Braz. J. Med. Biol. Res. 2004, 37, 459-477.
31. Ren, S. X., Fu, G., Jiang, X. G., Zang, R. et al., Nature 2003, 422, 888-893.
32. Jacobs, J. M., Yang, X., Luft, B. J., Dunn, J. J. et al., Proteomics 2005, 5, 1446-1453.
33. Bledsoe, H. A., Carroll, J. A., Whelchel, T. R., Farmer, M. A. et al., J. Bacteriol. 1994, 176, 7447-7455.
34. Haake, D. A., Matsunaga, J., Infect. Immun. 2002, 70, 4936-4945.
35. Radolf, J. D., Goldberg, M. S., Bourell, K., Baker, S. I. et al., Infect. Immun. 1995, 63, 2154-2163.
36. Radolf, J. D., Robinson, E. J., Bourell, K. W., Akins, D. R. et al., Infect. Immun. 1995, 63, 4244-4252.
37. Shang, E. S., Skare, J. T., Exner, M. M., Blanco, D. R. et al., Infect. Immun. 1998, 66, 1082-1091.
38. Skare, J. T., Shang, E. S., Foley, D. M., Blanco, D. R. et al., J. Clin. Invest. 1995, 96, 2380-2392.
39. Auran, N. E., Johnson, R. C., Ritzi, D. M., Infect. Immun. 1972, 5, 968-975.
40. Coleman, J. L., Benach, J. L., Beck, G., Habicht, G. S., Zentralbl. Bakteriol. Mikrobiol. Hyg. [A] 1986, 263, 123-126.
41. Blanco, D. R., Reimann, K., Skare, J., Champion, C. I. et al., J. Bacteriol. 1994, 176, 6088-6099.
42. Nally, J. E., Whitelegge, J. P., Aguilera, R., Pereira, M. M. et al., Proteomics 2005, 5, 144-152.
43. Carroll, J. A., El-Hage, N., Miller, J. C., Babb, K., Stevenson, B., Infect. Immun. 2001, 69, 5286-5293.
44. Plaza, H., Whelchel, T. R., Garczynski, S. F., Howerth, E. W., Gherardini, F. C., J. Bacteriol. 1997, 179, 5414-5421.
45. Ben-Menachem, G., Kubler-Kielb, J., Coxon, B., Yergey, A., Schneerson, R., Proc. Natl. Acad. Sci. USA 2003, 100, 7913-7918.
46. Livermore, B. P., Bey, R. F., Johnson, R. C., Infect. Immun. 1978, 20, 215-220.
47. Penn, C. W., Cockayne, A., Bailey, M. J., J. Gen. Microbiol. 1985, 131, 2349-2357.
48. Bordier, C., J. Biol. Chem. 1981, 256, 1604-1607.
49. Anda, P., Backenson, P. B., Coleman, J. L., Benach, J. L., Infect. Immun. 1994, 62, 1070-1078.
50. Brandt, M. E., Riley, B. S., Radolf, J. D., Norgard, M. V., Infect. Immun. 1990, 58, 983-991.
51. Coleman, J. L., Benach, J. L., J. Clin. Invest. 1989, 84, 322-330.
52. Coleman, J. L., Benach, J. L., J. Infect. Dis. 1992, 165, 658-666.
53. Crother, T. R., Champion, C. I., Whitelegge, J. P., Aguilera, R. et al., Infect. Immun. 2004, 72, 5063-5072.
54. Crother, I R., Champion, C. I., Wu, X. Y., Blanco, D. R. et al., Infect. Immun. 2003, 71, 3419-3428.
55. Cullen, P. A., Cordwell, S. J., Bulach, D. M., Haake, D. A., Adler, B., Infect. Immun. 2002, 70, 2311-2318.
56. Hagman, K. E., Lahdenne, P., Popova, T. G., Porcella, S. F. et al., Infect. Immun. 1998, 66, 2674-2683.
57. Jiang, W., Gorevic, P. D., Dattwyler, R. J., Dunn, J. J., Luft, B. J., Clin. Diagn. Lab. Immunol. 1994, 1, 406-412.
58. Nally, J. E., Timoney, J. F., Stevenson, B., Infect. Immun. 2001, 69, 400-404.
59. Probert, W. S., Allsup, K. M., LeFebvre, R. B., Infect. Immun. 1995, 63, 1933-1939.
60. Radolf, J. D., Norgard, M. V., Infect. Immun. 1988, 56, 1825-1828.
61. Rao, T D., Frey, A. B., Clin. Immunol. Immunopathol. 1998, 89, 94-104.
62. Shang, E. S., Skare, J. T., Erdjument-Bromage, H., Blanco, D. R. et al., J. Bacteriol. 1997, 179, 2238-2246.
63. Shin, J. J., Bryksin, A. V., Godfrey, H. P., Cabello, F. C., Infect. Immun. 2004, 72, 2280-2287.
64. Wallich, R., Simon, M. M., Hofmann, H., Moter, S. E. et al., Infect. Immun. 1993, 61, 4158-4166.
65. Zhang, H., Raji, A., Theisen, M., Hansen, P. R., Marconi, R. T., J. Bacteriol. 2005, 187, 175-184.
66. Zuerner, R. L., Knudtson, W., Bolin, C. A., Trueba, G., Microb. Pathog. 1991, 10, 311-322.
67. Nally, J. E., Whitelegge, J. P., Bassilian, S., Blanco, D. R., Lovett, M. A., Infect. Immun. 2007, 75, 766-773.
68. Bunikis, J., Barbour, A. G., Infect. Immun. 1999, 67, 2874-2883.
69. Haake, D. A., Walker, E. M., Blanco, D. R., Bolin, C. A. et al., Infect. Immun. 1991, 59, 1131-1140.
70. Cox, D. L., Akins, D. R., Porcella, S. F., Norgard, M. V., Radolf, J. D., Mol. Microbiol. 1995, 15, 1151-1164.
71. Bulach, D. M., Zuerner, R. L., Wilson, P., Seemann, T. et al., Proc. Natl. Acad Sci. USA 2006, 103, 14560-14565.
72. Casjens, S., Palmer, N., van Vugt, R., Huang, W. M. et al., Mol. Microbiol. 2000, 35, 490-516.
73. Fraser, C. M., Casjens, S., Huang, W. M., Sutton, G. G. et al., Nature 1997, 390, 580-586.
74. Schwan, T. G., Burgdorfer, W., Garon, C. F., Infect. Immun. 1988, 56, 1831-1836.
75. Carroll, J. A., Gherardini, F. C., Infect. Immun. 1996, 64, 392-398.
76. Purser, J. E., Norris, S. J., Proc. Natl. Acad Sci. USA 2000, 97, 13865-13870.
77. McDowell, J. V., Sung, S. Y., Labandeira-Rey, M., Skare, J. T., Marconi, R. T., Infect. Immun. 2001, 69, 3670-3677.
78. Kehl, K. S., Farmer, S. G., Komorowski, R. A., Knox, K. K., Infect. Immun. 1986, 54, 899-902.
79. Kruger, H., Reuss, K., Pulz, M., Rohrbach, E. et al., J. Neurol. 1989, 236, 322-328.
80. Martin, R., Martens, U., Sticht-Groh, V., Dorries, R., Kruger, H., J. Neurol. 1988, 235, 229-233.
81. Luft, B. J., Jiang, W., Munoz, P., Dattwyler, R. J., Gorevic, P. D., Infect. Immun. 1989, 57, 3637-3645.
82. O'Farrell, P. Z., Goodman, H. M., O'Farrell, P. H., Cell 1977, 12, 1133-1141.
83. O'Farrell, P. H., J. Biol. Chem. 1975, 250, 4007-4021.
84. Nowalk, A. J., Gilmore, R. D., Jr., Carroll, J. A., Infect. Immun. 2006, 74, 3864-3873.
85. Carroll, J. A., Garon, C. F., Schwan, T G., Infect. Immun. 1999, 67, 3181-3187.
86. Ostberg, Y., Carroll, J. A., Pinne, M., Krum, J. G. et al., J. Bacteriol. 2004, 186, 2074-2084.
87. Stewart, P. E., Wang, X., Bueschel, D. M., Clifton, D. R. et al., Infect. Immun. 2006, 74, 3547-3553.
88. Akins, D. R., Bourell, K. W., Caimano, M. J., Norgard, M. V., Radolf, J. D., J. Clin. Invest. 1998, 101, 2240-2250.
89. Sellati, T. J., Bouis, D. A., Caimano, M. J., Feulner, J. A., et al., J. Immunol. 1999, 163, 2049-2056.
90. Jungblut, P. R., Grabher, G., Stoffler, G., Electrophoresis 1999, 20, 3611-3622.
91. Jungblut, P. R., Zimny-Arndt, U., Zeindl-Eberhart, E., Stulik, J. et al., Electrophoresis 1999, 20, 2100-2110.
92. Benach, J. L., Coleman, J. L., Golightly, M. G., J. Immunol. 1988, 140, 265-272.
93. Klose, J., Humangenetik 1975, 26, 231-243.
94. Cruz, M., Siden, A., Electrophoresis 1992, 13, 229-234.
95. Babb, K., von Lackum, K., Wattier, R. L., Riley, S. P., Stevenson, B., J. Bacteriol. 2005, 187, 3079-3087.
96. Stevenson, B., Babb, K., Infect. Immun. 2002, 70, 4099-4105.
97. Bergmann, S., Rohde, M., Chhatwal, G. S., Hammerschmidt, S., Mol. Microbiol. 2001, 40, 1273-1287.
98. Bergmann, S., Wild, D., Diekmann, O., Frank, R. et al., Mol. Microbiol. 2003, 49, 411-423.
99. Carneiro, C. R., Postol, E., Nomizo, R., Reis, L. F., Brentani, R. R., Microbes Infect. 2004, 6, 604-608.
100. Whiting, G. C., Evans, J. T., Patel, S., Gillespie, S. H., J. Med. Microbiol. 2002, 51, 837-843.
101. Modun, B., Williams, P., Infect. Immun. 1999, 67, 1086-1092
102. Goji, N., Potter, A. A., Perez-Casal, J., Vet. Microbiol. 2004, 99, 269-279.
103. Tanaka, T., Abe, Y, Inoue, N., Kim, W. S. et al., J. Vet. Med. Sci. 2004, 66, 619-625.
104. Kolm, G., Knapp, E., Wagner, R., Klein, D., Res. Vet. Sci. 2007, 83, 165-170.
105. Raja, C. I., Kumar, S., Harle, A., Nanda, J. S., Raje, M., J. Biol. Chem. 2006, 282, 3252-3621.
106. Carroll, J. A., Cordova, R. M., Garon, C. F., Infect. Immun. 2000, 68, 6677-6684.
107. Cassatt, D. R., Patel, N. K., Ulbrandt, N. D., Hanson, M. S., Infect. Immun. 1998, 66, 5379-5387.
108. Schwan, T. G., Piesman, J., Golde, W. T., Dolan, M. C., Rosa, P. A., Proc. Natl. Acad. Sci. USA 1995, 92, 2909-2913.
109. Stevenson, B., Schwan, T. G., Rosa, P. A., Infect. Immun. 1995, 63, 4535-4539.
110. Hyde, J. A., Trzeciakowski, J. P., Skare, J. T., J. Bacteriol. 2007, 189, 437-445.
111. Seshu, J., Boylan, J. A., Gherardini, F. C., Skare, J. T., Infect. Immun. 2004, 72, 1580-1586.
112. Matsunaga, J., Sanchez, Y., Xu, X., Haake, D. A., Infect. Immun. 2005, 73, 70-78.
113. Brinkman, M. B., McKevitt, M., McLoughlin, M., Perez, C. et al., J. Clin. Microbiol. 2006, 44, 888-891.
114. McKevitt, M., Patel, K., Smais, D., Marsh, M. et al., Genome Res. 2003, 13, 1665-1674.
115. McKevitt, M., Brinkman, M. B., McLoughlin, M., Perez, C. et al., Infect. Immun. 2005, 73, 4445-4450.
116. Probert, W. S., Johnson, B. J., Mol. Microbiol. 1998, 30, 1003-1015.
117. Hartmann, K., Corvey, C., Skerka, C., Kirschfink, M. et al., Mol. Microbiol. 2006, 61, 1220-1236.
118. Babb, K., Bykowski, T., Riley, S. P., Miller, M. C. et al., J. Bacteriol. 2006, 188, 4331-4339.
119. Stevenson, B., El-Hage, N., Hines, M. A., Miller, J. C., Babb, K., Infect. Immun. 2002, 70, 491-497.
120. Kraiczy, P., Hartmann, K., Hellwage, J., Skerka, C. et al., Int. J. Med. Microbiol. 2004, 293, 152-157.
121. Miller, J. C., El-Hage, N., Babb, K., Stevenson, B., J. Clin. Microbiol. 2000, 38, 1569-1574.
122. Dunkley, T. P., Watson, R., Griffin, J. L., Dupree, P., Lilley, K. S., Mol. Cell. Proteomics 2004, 3, 1128-1134.
123. Foster, L. J., de Hoog, C. L., Zhang, Y., Zhang, Y. et al., Cell 2006, 125, 187-199.
124. Bouchon, B., Klein, M., Bischoff, R., Van Dorsselaer, A., Roitsch, C., Anal. Biochem. 1997, 246, 52-61.
125. Bouchon, B., Van Dorsselaer, A., Roitsch, C., Biol. Mass Spectrom. 1993, 22, 358-360.
126. Blanco, D. R., Whitelegge, J. P., Miller, J. N., Lovett, M. A., J. Bacteriol. 1999, 181, 5094-5098.
127. Haake, D. A., Chao, G., Zuerner, R. L., Barnett, J. K. et al., Infect. Immun. 2000, 68, 2276-2285.
128. Whitelegge, J. P., Gundersen, C. B., Faull, K. F., Protein Sci. 1998, 7, 1423-1430.
129. Kelleher, N. L., Lin, H. Y., Valaskovic, G. A., Aaserud, D. J. et al., J. Am. Chem. Soc. 1999, 121, 806-812.
130. Whitelegge, J., Halgand, F., Souda, P., Zabrouskov, V., Expert Rev. Proteomics 2006, 3, 585-596.
131. Zubarev, R. A., Kelleher, N. L., McLafferty; F. W., J. Am. Chem. Soc. 1998, 120, 3265-3266.
132. Mirgorodskaya, E., Roepstorff, P., Zubarev, R. A., Anal Chem 1999, 71, 4431-4436.
133. Xie, Y., Zhang, J., Yin, S., Loo, J. A., J. Am. Chem. Soc. 2006, 128, 14432-14433.
134. Hakansson, K., Chalmers, M. J., Quinn, J. R, McFarland, M. A. et al., Anal. Chem. 2003, 75, 3256-3262.
135. Makarov, A., Anal. Chem. 2000, 72, 1156-1162.
136. Macek, B., Waanders, L. F., Olsen, J. V., Mann, M., Mol. Cell. Proteomics 2006, 5, 949-958.
137. Syka, J. E., Coon, J. J., Schroeder, M. J., Shabanowitz, J., Hunt, D. F., Proc. Natl. Acad. Sci. USA 2004, 107, 9528-9533.
138. Hanff, P. A., Norris, S. J., Lovett, M. A., Miller, J. N., Sex. Transm. Dis. 1984, 11, 275-286.
139. Conrads, T. P., Issaq, H. J., Hoang, V. M., Adv. Protein Chem. 2003, 65, 133-159.
140. Unlu, M., Morgan, M. E., Minden, J. S., Electrophoresis 1997, 18, 2071-2077.
141. Tonge, R., Shaw, J., Middleton, B., Rowlinson, R. et al., Proteomics 2001, 1, 377-396.