Noncoding RNAs in the brain

Journal of Neuroscience

Volumn 27, Issue 44, 2007, Pages 11856-11859

  Satterlee, John S ^a   Barbee, Scott ^b   Jin, Peng ^c   Krichevsky, Anna ^d   Salama, Sofie ^e   Schratt, Gerhard ^f   Wu, Da Yu ^a  

^a NATIONAL INSTITUTE ON DRUG ABUSE   (United States)

^b UNIVERSITY OF DENVER   (United States)

^c EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d BRIGHAM AND WOMEN S HOSPITAL   (United States)

^e University of California Santa Cruz   (United States)

^f UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

Brain development; CREB; Dendritic spine; Development; Differentiation; Epigenetic; Human forebrain development; Learning and memory; Neurogenesis; Purkinje neurons; RNA; Synaptic plasticity

Indexed keywords

MESSENGER RNA; NERVE PROTEIN; UNTRANSLATED RNA;

BRAIN; BRAIN DISEASE; BRAIN MATURATION; BRAIN NERVE CELL; CELL FATE; CELL SPECIFICITY; CONFERENCE PAPER; DENDRITIC SPINE; DEVELOPMENTAL DISORDER; FRAGILE X SYNDROME; GENE EXPRESSION; GENE FUNCTION; GILLES DE LA TOURETTE SYNDROME; HUMAN; MENTAL DISEASE; NERVE CELL DIFFERENTIATION; NERVE FUNCTION; NERVOUS SYSTEM; NONHUMAN; PARKINSON DISEASE; PRIORITY JOURNAL; PROTEIN SYNTHESIS; RNA ANALYSIS; RNA STRUCTURE; RNA TRANSCRIPTION; SYNAPSE;

ANIMALS; BRAIN; BRAIN DISEASES; GENE EXPRESSION REGULATION; HUMANS; RNA, UNTRANSLATED;

EID: 35948967287     PISSN: 02706474     EISSN: 02706474     Source Type: Journal    
DOI: 10.1523/JNEUROSCI.3624-07.2007     Document Type: Conference Paper

References (42)

1. Abelson JF, Kwan KY, O'Roak BJ, Baek DY, Stillman AA, Morgan TM, Mathews CA, Pauls DL, Rasin M, Gunel M, Davis NR, Ercan-Sencicek AG, Guez DH, Spertus JA, Leckman JF, Dure LS, Kurlan R, Singer HS, Gilbert DL, Farhi A, et al. (2005) Sequence variants in SLITRK1are associated with Tourette's syndrome. Science 310:317-320.
2. Ashraf SI, McLoon AL, Sclarsoc SM, Kunes S (2006) Synaptic protein synthesis associated with memory is regulated by the RISC pathway in Drosophila. Cell 124:191-205.
3. Barbee SA, Estes PS, Cziko A, Hillebrand J, Luedeman RA, Coller JM, Johnson N, Howlett IC, Geng C, Ueda R, Brand AH, Newbury SF, Wilhelm JE, Levine RB, Nakamura A, Parker R, Ramaswami M (2006) Staufen-and FMRP containing neuronal RNPs are structurally and functionally related to somatic P bodies. Neuron 52:997-1009.
4. Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281-297.
5. Berezikov E, Plasterk RH (2005) Camels and zebrafish, viruses and cancer: a microRNA update. Hum Mol Genet 14:R183-R190.
6. Berezikov E, Thuemmler F, Van Laake LW, Kondova I, Bontrop R, Cuppen E, Plasterk RH (2006) Diversity of microRNAs in human and chimpanzee brain. Nat Genet 38:1375-1377.
7. Bilen J, Liu N, Burnett BG, Pittman RN, Bonini NM (2006) MicroRNA pathways modulate polyglutamine-induced neurodegeneration. Mol Cell 24:157-163.
8. Cao X, Yeo G, Muotri AR, Kuwabara T, Gage FH (2006) Noncoding RNAs in the mammalian central nervous system. Annu Rev Neurosci 29:77-103.
9. Cao X, Pfaff SL, Gage FH (2007) A functional study of miR-124 in the developing neural tube. Genes Dev 21:531-536.
10. Carlezon WA, Duman RS, Nestler EJ (2005) The many faces of CREB. Trends Neurosci 28:436-445.
11. Carninci P, Kasukawa T, Katayama S, Gough J, , Maeda N, , Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, et al. (2005) The transcriptional landscape of the mammalian genome. Science 309:1559-1563.
12. Chan JA, Krichevsky AM, Kosik KS (2005) MicroRNA-21 is an antiapoptotic factor in human glioblastoma cells. Cancer Res 65:6029-6033.
13. Chang S, Johnston RJ, Frekjaer-Jensen C, Lockery S, Hobert O (2004) MicroRNAs act sequentially and asymmetrically to control chemosensory laterality in the nematode. Nature 430:785-789.
14. Chang SC, Tucker T, Thorogood NP, Brown CJ (2006) Mechanisms of X-chromosome inactivation. Front Biosci 11:852-866.
15. Cioce M, Lamond AI (2005) Cajal bodies: a long history of discovery. Annu Rev Cell Dev Biol 21:105-131.
16. Conaco C, Otto S, Han JJ, Mandel G (2006) Reciprocal actions of REST and a microRNA promote neuronal identity. Proc Natl Acad Sci USA 103:2422-2427.
17. Eulalio A, Behm-Ansmant I, Izaurralde E (2007) P bodies: at the crossroads of post-transcriptional pathways. Nat Rev Mol Cell Biol 8:9-22.
18. Grewal SI, Rice JC (2004) Regulation of heterochromatin by histone methylation and small RNAs. Curr Opin Cell Biol 16:230-238.
19. Hobert O (2006) Architecture of a microRNA- controlled gene regulatory network that diversifies neuronal cell fates. Cold Spring Harb Symp Quant Biol 71:181-188.
20. Jakymiw A, Pauley KM, Li S, Ikeda K, Lian S, Eystathioy T, Satoh M, Fritzler NJ, Chan EK (2007) The role of GW/P-bodies in RNA processing and silencing. J Cell Sci 120:1317-1323.
21. Jin P, Zarnescu DC, Ceman S, Nakamoto M, Mowrey J, Jongens TA, Nelson DL, Moses K, Warren ST (2004a) Biochemical and genetic interaction between the fragile X mental retardation protein and the microRNA pathway. Nat Neurosci 7:113-117.
22. Jin P, Alisch RS, Warren ST (2004b) RNA and microRNAs in Fragile X mental retardation. Nat Cell Biol 6:1048-1053.
23. Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermuller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S, Piccolboni A, Sementchenko V, Tammana H, Gingeras TR (2007) RNA maps reveal new RNA classes and possible function for pervasive transcription. Science 316:1484-1488.
24. Kim J, Inoue K, Ishii J, Vanti WB, Voronov SV, Murchison E, Hannon G, Abeliovich A (2007) A microRNA feedback circuit in midbrain dopamine neurons. Science 317:1220-1224.
25. Kosik KS (2006) The neuronal microRNA system. Nat Rev Neurosci 7:911-920.
26. Krichevsky AM, Sonntag K, Isacson O, Kosik KS (2007) Specific MicroRNAs modulate embryonic stem cell derived neurogenesis. Stem Cell 24:857-866.
27. Krutzfeldt J, Rajewsky N, Braich, Rajeev KG, Tuschi T, Manoharan M, Stoffel M (2005) Silencing of microRNAs in vivo with "antagomirs." Nature 4381:685-689.
28. Kumar P, Wu H, McBride JL, Jung K, Kim MH, Davidson BL, Lee SK, Shankar P, Manjunath N (2007) Transvascular delivery of small interfering RNA to the central nervous system. Nature 448:39-43.
29. Lamond AI, Spector DL (2003) Nuclear speckles: a model for nuclear organelles. Nat Rev Mol Cell Biol 4:605-612.
30. Levenson JM, Sweatt JD (2006) Epigenetic mechanisms: a common theme in vertebrate and invertebrate memory formation. Cell Mol Life Sci 63:1009-1016.
31. Lim LP, Lau NC, Garrett-Engele P, Grimson A, Schelter JM, Castle J, Bartel DP, Linsley PS, Johnson JM (2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433:769-773.
32. Makeyev EV, Zhang J, Carrasco MA, Maniatis T (2007) The microRNA muR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. Mol Cell 27:435-448.
33. Matera AG, Terns RM, Terns MP (2007) Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs. Nat Rev Mol Cell Biol 8:209-220.
34. Mattick JS, Makunin IV (2006) Non-coding RNA. Hum Mol Genet 15:R17-R29.
35. Mehler MF, Mattick JS (2007) Non-coding RNAs and RNA editing in brain development, functional diversification, and neurological disease. Physiol Rev 87:799-823.
36. Pollard KS, Salama SR, Lambert N, Lambot M, Coppens S, Pedersen JS, Katzman S, King S, King B, Onodera C, Siepel A, Kern AD, Dehay C, Igel H, Ares Jr M, Vanderhaeghen P, Haussler D (2006) An RNA gene expressed during cortical development involved rapidly in humans. Nature 443:167-172.
37. Schaefer A, O'Carroll D, Tan CL, Hillman D, Sugimori M, Llinas R, Greengard P (2007) Cerebellar neurodegeneration in the absence of microRNAs. J Exp Med 204:1553-1558.
38. Schratt GM, Tuebing F, Nigh EA, Kane CG, Sabatini ME, Kiebler M, Greenberg ME (2006) A brain-specific microRNA regulates dendritic spine development. Nature 439:283-289.
39. Shamovsky I, Nudler E (2006) Gene control by large noncoding RNAs. Sci STKE:pe39.
40. Sleutels F, Zwart R, Barlow DP (2002) The non-coding Air RNA is required for silencing autosomal imprinted genes. Nature 415:810-813.
41. Visvanathan J, Lee S, Lee B, Lee JW, Lee SK (2007) The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development. Genes Dev 21:744-749.
42. Vo N, Klein ME, Varlamova O, Keller DM, Yamamoto T, Goodman RH, Impey S (2005) A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis. Science 102: 16426-16431.