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Volumn 24, Issue 9, 2007, Pages 1926-1933

Widespread intron loss suggests retrotransposon activity in ancient apicomplexans

Author keywords

Genome evolution; Intron gain; Intron loss; Retrotransposon evolution; Selfish DNA

Indexed keywords

RNA DIRECTED DNA POLYMERASE;

EID: 35748951022     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msm102     Document Type: Article
Times cited : (31)

References (43)
  • 3
    • 34347389905 scopus 로고    scopus 로고
    • Three distinct modes of intron dynamics in the evolution of eukaryotes
    • DOI 10.1101/gr.6438607
    • Carmel L, Wolf YI, Rogozin IB, Koonin EV. 2007. Three distinct modes of intron dynamics in the evolution of eukaryotes. Genome Res. 17:1034-1044. (Pubitemid 47026350)
    • (2007) Genome Research , vol.17 , Issue.7 , pp. 1034-1044
    • Carmel, L.1    Wolf, Y.I.2    Rogozin, I.B.3    Koonin, E.V.4
  • 4
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • DOI 10.1038/371215a0
    • Charlesworth B, Sniegowski P, Stephan W. 1994. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature. 371:215-220. (Pubitemid 24293018)
    • (1994) Nature , vol.371 , Issue.6494 , pp. 215-220
    • Charlesworth, B.1    Sniegowski, P.2    Stephan, W.3
  • 5
    • 16344385067 scopus 로고    scopus 로고
    • Complex spliceosomal organization ancestral to extant eukaryotes
    • DOI 10.1093/molbev/msi091
    • Collins L, Penny D. 2005. Complex spliceosomal organization ancestral to extant eukaryotes. Mol Biol Evol. 22:1053-1066. (Pubitemid 40471418)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.4 , pp. 1053-1066
    • Collins, L.1    Penny, D.2
  • 6
    • 33646137380 scopus 로고    scopus 로고
    • Likely scenarios of intron evolution
    • McLysaght A, Huson DH, editors. Comparative genomics Heidelberg: Springer-Verlag.
    • Csuros M. 2005. Likely scenarios of intron evolution. In: McLysaght A, Huson DH, editors. Comparative genomics. Volume 3678 of LNBI., Heidelberg: Springer-Verlag. p. 47-60.
    • (2005) LNBI , vol.3678 , pp. 47-60
    • Csuros, M.1
  • 7
    • 33751200507 scopus 로고    scopus 로고
    • An analysis of mobile genetic elements in three Plasmodium species and their potential impact on the nucleotide composition of the P. falciparum genome
    • Durand PM, Oelofse AJ, Coetzer TL. 2006. An analysis of mobile genetic elements in three Plasmodium species and their potential impact on the nucleotide composition of the P. falciparum genome. BMC Genomics. 7:282.
    • (2006) BMC Genomics , vol.7 , pp. 282
    • Durand, P.M.1    Oelofse, A.J.2    Coetzer, T.L.3
  • 8
    • 0028998727 scopus 로고
    • Evolutionary origin of Plasmodium and other Apicomplexa based on rRNA genes
    • Escalante AA, Ayala FJ. 1995. Evolutionary origin of Plasmodium and other Apicomplexa based on rRNA genes. Proc Natl Acad Sci USA. 92:5793-5797.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 5793-5797
    • Escalante, A.A.1    Ayala, F.J.2
  • 10
    • 14844304405 scopus 로고    scopus 로고
    • The unusually large Plasmodium telomerase reverse-transcriptase localizes in a discrete compartment associated with the nucleolus
    • DOI 10.1093/nar/gki260
    • Figueiredo LM, Rocha EPC, Mancio-Silva L, Prevost C, Hernandez-Verdun D, Scherf A. 2005. The unusually large Plasmodium telomerase reverse transcriptase localizes in a discrete compartment associated with the nucleolus. Nucleic Acids Res. 33:1111-1122. (Pubitemid 41430531)
    • (2005) Nucleic Acids Research , vol.33 , Issue.3 , pp. 1111-1122
    • Figueiredo, L.M.1    Rocha, E.P.C.2    Mancio-Silva, L.3    Prevost, C.4    Hernandez-Verdun, D.5    Scherf, A.6
  • 12
    • 0037015614 scopus 로고    scopus 로고
    • Genome sequence of the human malaria parasite Plasmodium falciparum
    • (45 co-authors).
    • Gardner MJ, Hall N, Fung E, et al. (45 co-authors). 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 419:498-511.
    • (2002) Nature , vol.419 , pp. 498-511
    • Gardner, M.J.1    Hall, N.2    Fung, E.3
  • 13
    • 0029798510 scopus 로고    scopus 로고
    • The miniaturized nuclear genome of a eukaryotic endosymbiont contains genes that overlap, genes that are cotranscribed, and the smallest known spliceosomal introns
    • DOI 10.1073/pnas.93.15.7737
    • Gilson PR, McFadden GI. 1996. The miniaturized nuclear genome of eukaryotic endosymbion contains genes that overlap, genes that are cotranscribed, and the smallest known spliceosomal introns. Proc Natl Acad Sci USA. 93:7737-7742. (Pubitemid 26277107)
    • (1996) Proceedings of the National Academy of Sciences of the United States of America , vol.93 , Issue.15 , pp. 7737-7742
    • Gilson, P.R.1    Mcfadden, G.I.2
  • 15
    • 0020447816 scopus 로고
    • Selfish DNA: A sexually transmitted nuclear parasite
    • Hickey DA. 1982. Selfish DNA: a sexually-transmitted nuclear parasite. Genetics. 101:519-531. (Pubitemid 13241272)
    • (1982) Genetics , vol.101 , Issue.3-4 , pp. 519-531
    • Hickey, D.A.1
  • 16
    • 29444439485 scopus 로고    scopus 로고
    • The biology of intron gain and loss
    • DOI 10.1016/j.tig.2005.10.006, PII S0168952505003239
    • Jeffares DC, Mourier T, Penny D. 2006. The biology of intron gain and loss. Trends Genet. 22:16-22. (Pubitemid 43011993)
    • (2006) Trends in Genetics , vol.22 , Issue.1 , pp. 16-22
    • Jeffares, D.C.1    Mourier, T.2    Penny, D.3
  • 18
    • 2342512102 scopus 로고    scopus 로고
    • Reduction and compaction in the genome of the apicomplexan parasite Cryptosporidium parvum
    • DOI 10.1016/S1534-5807(04)00135-2, PII S1534580704001352
    • Keeling PJ. 2004. Reduction and compaction in the genome of the apicomplexan parasite Cryptosporidium parvum. Dev Cell. 6:614-616. (Pubitemid 38579346)
    • (2004) Developmental Cell , vol.6 , Issue.5 , pp. 614-616
    • Keeling, P.J.1
  • 19
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • (256 co-authors)
    • Lander ES, Linton LM, Birren B, et al. (256 co-authors). 2001. Initial sequencing and analysis of the human genome. Nature. 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3
  • 20
    • 33745088890 scopus 로고    scopus 로고
    • Intron gain and loss in segmentally duplicated genes in rice
    • Lin H, Zhu W, Silva J, Gu X, Buell CR. 2006. Intron gain and loss in segmentally duplicated genes in rice. Genome Biol. 7:R41.
    • (2006) Genome Biol , vol.7
    • Lin, H.1    Zhu, W.2    Silva, J.3    Gu, X.4    Buell, C.R.5
  • 21
    • 0038780670 scopus 로고    scopus 로고
    • Eukaryotic intron loss
    • DOI 10.1126/science.1080559
    • Mourier T, Jeffares DC. 2003. Eukaryotic intron loss. Science. 300:1393. (Pubitemid 36638151)
    • (2003) Science , vol.300 , Issue.5624 , pp. 1393
    • Mourier, T.1    Jeffares, D.C.2
  • 22
    • 20444376117 scopus 로고    scopus 로고
    • Evolution of noncoding and silent coding sites in the Plasmodium falciparum and Plasmodium reichenowi genomes
    • DOI 10.1093/molbev/msi154
    • Neafsey DE, Hartl DL, Berriman M. 2005. Evolution of noncoding and silent coding sites in the Plasmodium falciparum and Plasmodium reichenowi genomes. Mol Biol Evol. 22:1621-1626. (Pubitemid 40800690)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.7 , pp. 1621-1626
    • Neafsey, D.E.1    Hartl, D.L.2    Berriman, M.3
  • 23
    • 0032169874 scopus 로고    scopus 로고
    • Organisation and informational content of the Theileria parva genome
    • DOI 10.1016/S0166-6851(98)00101-7, PII S0166685198001017
    • Nene V, Morzaria S, Bishop R. 1998. Organisation and informational content of the Theileria parva genome. Mol Biochem Parasitol. 95:1-8. (Pubitemid 28404733)
    • (1998) Molecular and Biochemical Parasitology , vol.95 , Issue.1 , pp. 1-8
    • Nene, V.1    Morzaria, S.2    Bishop, R.3
  • 24
    • 84872246297 scopus 로고    scopus 로고
    • New maximum likelihood estimators for eukaryotic intron evolution
    • Nguyen HD, Yoshihama M, Kenmochi N. 2005. New maximum likelihood estimators for eukaryotic intron evolution. PLoS Comput Biol. 1:e79.
    • (2005) PLoS Comput Biol , vol.1
    • Nguyen, H.D.1    Yoshihama, M.2    Kenmochi, N.3
  • 25
    • 34548316459 scopus 로고    scopus 로고
    • The evolution of spliceosomal introns in alveolates
    • DOI 10.1093/molbev/msm037
    • Nguyen HD, Yoshihama M, Kenmochi N. 2007. The evolution of spliceosomal introns in Alveolates. Mol Biol Evol. 24:1093-1096. (Pubitemid 47343643)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.5 , pp. 1093-1096
    • Nguyen, H.D.1    Yoshihama, M.2    Kenmochi, N.3
  • 27
    • 19544367618 scopus 로고    scopus 로고
    • mRNA-mediated intron losses: Evidence from extraordinarily large exons
    • Niu DK, Hou WR, Li SW. 2005. mRNA-mediated intron losses: evidence from extraordinarily large exons. Mol Biol Evol. 22:1475-1481.
    • (2005) Mol Biol Evol , vol.22 , pp. 1475-1481
    • Niu, D.K.1    Hou, W.R.2    Li, S.W.3
  • 28
    • 0042921194 scopus 로고    scopus 로고
    • Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution
    • DOI 10.1016/S0960-9822(03)00558-X
    • Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV. 2003. Remarkable interkingdom conservation of intron positions and massive, lineage specific intron loss and gain in eukaryotic evolution. Curr Biol. 13:1512-1517. (Pubitemid 37078407)
    • (2003) Current Biology , vol.13 , Issue.17 , pp. 1512-1517
    • Rogozin, I.B.1    Wolf, Y.I.2    Sorokin, A.V.3    Mirkin, B.G.4    Koonin, E.V.5
  • 33
    • 33644847698 scopus 로고    scopus 로고
    • The evolution of spliceosomal introns: Patterns, puzzles and progress
    • DOI 10.1038/nrg1807, PII N1807
    • Roy SW, Gilbert W. 2006. The evolution of spliceosomal introns: patterns, puzzles, and progress. Nat Rev Genet. 7:211-221. (Pubitemid 43361532)
    • (2006) Nature Reviews Genetics , vol.7 , Issue.3 , pp. 211-221
    • Roy, S.W.1    Gilbert, W.2
  • 34
    • 33744789972 scopus 로고    scopus 로고
    • Very little intron loss/gain in Plasmodium: Intron loss/gain mutation rates and intron number
    • DOI 10.1101/gr.4845406
    • Roy SW, Hartl DL. 2006. Very little intron loss/gain in Plasmodium: Intron loss/gain mutation rates and intron number. Genome Res. 16:750-756. (Pubitemid 43830695)
    • (2006) Genome Research , vol.16 , Issue.6 , pp. 750-756
    • Roy, S.W.1    Hartl, D.L.2
  • 35
    • 33749377870 scopus 로고    scopus 로고
    • Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution
    • DOI 10.1101/gr.5410606
    • Roy SW, Penny D. 2006. Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution. Genome Res. 16:1270-1275. (Pubitemid 44506960)
    • (2006) Genome Research , vol.16 , Issue.10 , pp. 1270-1275
    • Roy, S.W.1    Penny, D.2
  • 36
    • 34547735995 scopus 로고    scopus 로고
    • On the incidence of intron loss and gain in paralogous gene families
    • DOI 10.1093/molbev/msm082
    • Roy SW, Penny D. 2007. On the incidence of intron loss and gain in paralogous gene families. Mol Biol Evol. 24:1579-1581. (Pubitemid 47236682)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1579-1581
    • Roy, S.W.1    Penny, D.2
  • 38
    • 33746001953 scopus 로고    scopus 로고
    • A high density of ancient spliceosomal introns in oxymonad excavates
    • Slamovits CH, Keeling PJ. 2006. A high density of ancient spliceosomal introns in oxymonad excavates. BMC Evol Biol. 6:34.
    • (2006) BMC Evol Biol , vol.6 , pp. 34
    • Slamovits, C.H.1    Keeling, P.J.2
  • 39
    • 33646904207 scopus 로고    scopus 로고
    • Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans
    • DOI 10.1128/EC.5.5.789-793.2006
    • Stajich JE, Dietrich FS. 2006. Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans. Eukaryotic Cell. 5:789-793. (Pubitemid 43794478)
    • (2006) Eukaryotic Cell , vol.5 , Issue.5 , pp. 789-793
    • Stajich, J.E.1    Dietrich, F.S.2
  • 40
    • 4143150876 scopus 로고    scopus 로고
    • Preferential loss and gain of introns in 3# portions of genes suggests a reverse-transcription mechanism of intron insertion
    • DOI 10.1016/j.gene.2004.05.027, PII S0378111904003038
    • Sverdlov AV, Babenko VN, Rogozin IB, Koonin EV. 2004. Preferential loss and gain of introns in 3# portions of genes suggests a reverse-transcription mechanism of intron insertion. Gene. 338:85-91. (Pubitemid 39092414)
    • (2004) Gene , vol.338 , Issue.1 , pp. 85-91
    • Sverdlov, A.V.1    Babenko, V.N.2    Rogozin, I.B.3    Koonin, E.V.4
  • 43
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome. (Oryza sativa L. ssp. Indica)
    • (100 co-authors)
    • Yu J, Hu S, Wang J, et al. (100 co-authors). 2002. A draft sequence of the rice genome. (Oryza sativa L. ssp. Indica). Science. 296:79-92.
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.