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Volumn 47, Issue 5, 2007, Pages 1967-1972

Molecular mechanism of the sea anemone toxin ShK recognizing the Kv1.3 channel explored by docking and molecular dynamic simulations

Author keywords

[No Author keywords available]

Indexed keywords

CLUSTERING ALGORITHMS; COMPUTER SIMULATION; DOCKING; MOLECULAR DYNAMICS; OPTIMIZATION; POTASSIUM;

EID: 35248857005     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci700178w     Document Type: Article
Times cited : (29)

References (36)
  • 5
    • 33751232672 scopus 로고    scopus 로고
    • Beeton, C.; Wulff, H.; Standifer, N. E.; Azam, P.; Mullen, K. M.; Pennington, M. W.; Kolski-Andreaco, A.; Wei, E.; Grino, A.; Counts, D. R.; Wang, P. H.; LeeHealey, C. J.; Andrews, B. S.; Sankaranarayanan, A.; Homerick, D.; Roeck, W. W.; Tehranzadeh, J.; Stanhope, K. L.; Zimin, P.; Havel, P. J.; Griffey, S.; Knaus, H. G.; Nepom, G. T.; Gutman, G. A.; Calabresi, P. A.; Chandy, K. G. Kvl.3 channels are a therapeutic target for T cell-mediated autoimmune diseases. TYoc. Natl. Acad. Sci. U.S.A. 2006, 103, 17414-17419.
    • Beeton, C.; Wulff, H.; Standifer, N. E.; Azam, P.; Mullen, K. M.; Pennington, M. W.; Kolski-Andreaco, A.; Wei, E.; Grino, A.; Counts, D. R.; Wang, P. H.; LeeHealey, C. J.; Andrews, B. S.; Sankaranarayanan, A.; Homerick, D.; Roeck, W. W.; Tehranzadeh, J.; Stanhope, K. L.; Zimin, P.; Havel, P. J.; Griffey, S.; Knaus, H. G.; Nepom, G. T.; Gutman, G. A.; Calabresi, P. A.; Chandy, K. G. Kvl.3 channels are a therapeutic target for T cell-mediated autoimmune diseases. TYoc. Natl. Acad. Sci. U.S.A. 2006, 103, 17414-17419.
  • 6
    • 0033618255 scopus 로고    scopus 로고
    • Structural conservation of the pores of calcium-activated and voltage-gated potassium channels determined by a sea anemone toxin
    • Rauer, H.; Pennington, M.; Cahalan, M.; Chandy, K. G. Structural conservation of the pores of calcium-activated and voltage-gated potassium channels determined by a sea anemone toxin. J. Biol. Chem. 1999, 274, 21885-21892.
    • (1999) J. Biol. Chem , vol.274 , pp. 21885-21892
    • Rauer, H.1    Pennington, M.2    Cahalan, M.3    Chandy, K.G.4
  • 7
    • 0028276482 scopus 로고
    • + channel: Peptide and channel residues mediating molecular recognition
    • + channel: peptide and channel residues mediating molecular recognition. Neuron 1994, 12, 1377-1388.
    • (1994) Neuron , vol.12 , pp. 1377-1388
    • Goldstein, S.A.1    Pheasant, D.J.2    Miller, C.3
  • 8
    • 28544434796 scopus 로고    scopus 로고
    • Nuclear Magnetic Resonance Structural Studies of a Potassium Channel-Charybdotoxin Complex
    • Yu, L.; Sun, C.; Song, D.; Shen, J.; Xu, N.; Gunasekera, A.; Hajduk, P. J.; Olejniczak, E. T. Nuclear Magnetic Resonance Structural Studies of a Potassium Channel-Charybdotoxin Complex. Biochemistry 2005, 44, 15834-15841.
    • (2005) Biochemistry , vol.44 , pp. 15834-15841
    • Yu, L.1    Sun, C.2    Song, D.3    Shen, J.4    Xu, N.5    Gunasekera, A.6    Hajduk, P.J.7    Olejniczak, E.T.8
  • 10
    • 21644469377 scopus 로고    scopus 로고
    • Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures
    • Mendez, R.; Leplae, R.; Lensink, M. F.; Wodak, S. J. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins 2005, 60, 150-169.
    • (2005) Proteins , vol.60 , pp. 150-169
    • Mendez, R.1    Leplae, R.2    Lensink, M.F.3    Wodak, S.J.4
  • 11
    • 21644477228 scopus 로고    scopus 로고
    • Incorporation of flexibility into rigid-body docking: Applications in rounds 3-5 of CAPRI
    • Smith, G. R.; Fitzjohn, P. W.; Page, C. S.; Bates, P. A. Incorporation of flexibility into rigid-body docking: applications in rounds 3-5 of CAPRI. Proteins 2005, 60, 263-268.
    • (2005) Proteins , vol.60 , pp. 263-268
    • Smith, G.R.1    Fitzjohn, P.W.2    Page, C.S.3    Bates, P.A.4
  • 12
    • 0038526303 scopus 로고    scopus 로고
    • An initial-stage proteindocking algorithm
    • Chen, R.; Li, L.; Weng, Z. P. ZDOCK: An initial-stage proteindocking algorithm. Proteins 2003, 52, 80-87.
    • (2003) Proteins , vol.52 , pp. 80-87
    • Chen, R.1    Li, L.2    Weng, Z.3    ZDOCK, P.4
  • 14
    • 21644470603 scopus 로고    scopus 로고
    • Wiehe, K.; Pierce, B.; Mintseris, J; Tong, W. W.; Anderson, R.; Chen, R.; Weng, Z. P. ZDOCK and RDOCK performance in CAPRI rounds. Proteins 2005, 60, 207-213.
    • Wiehe, K.; Pierce, B.; Mintseris, J; Tong, W. W.; Anderson, R.; Chen, R.; Weng, Z. P. ZDOCK and RDOCK performance in CAPRI rounds. Proteins 2005, 60, 207-213.
  • 15
    • 3042814574 scopus 로고    scopus 로고
    • Simulation of the interaction between ScyTx and small conductance calcium-activated potassium channel by docking and MM-PBSA
    • Wu, Y. L.; Cao, Z. J.; Yi, H.; Jiang, D. H.; Mao, X.; Liu, H.; Li, W. X. Simulation of the interaction between ScyTx and small conductance calcium-activated potassium channel by docking and MM-PBSA. Biophys. J. 2004, 87, 105-112.
    • (2004) Biophys. J , vol.87 , pp. 105-112
    • Wu, Y.L.1    Cao, Z.J.2    Yi, H.3    Jiang, D.H.4    Mao, X.5    Liu, H.6    Li, W.X.7
  • 19
    • 0031473847 scopus 로고    scopus 로고
    • Guex, N.; Peitsch, M. C. SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modelling. Electrophoresis 1997, 18, 2714-2723.
    • Guex, N.; Peitsch, M. C. SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modelling. Electrophoresis 1997, 18, 2714-2723.
  • 21
    • 0036840108 scopus 로고    scopus 로고
    • + channel: A computational approach based on experimental distance restraints extracted from thermodynamic mutant cycles
    • + channel: a computational approach based on experimental distance restraints extracted from thermodynamic mutant cycles. Biophys. J. 2002, 83, 2595-2609.
    • (2002) Biophys. J , vol.83 , pp. 2595-2609
    • Eriksson, M.A.1    Roux, B.2
  • 22
    • 0036302289 scopus 로고    scopus 로고
    • Brownian dynamics simulations of the recognition of the scorpion toxin P05 with the small-conductance calcium-activated potassium channels
    • Cui, M.; Shen, J.; Briggs, J. M.; Fu, W.; Wu, J.; Zhang, Y.; Luo, X.; Chi, Z.; Ji, R.; Jiang, H.; Chen, K. Brownian dynamics simulations of the recognition of the scorpion toxin P05 with the small-conductance calcium-activated potassium channels. J. MoL Biol. 2002, 378, 417-428.
    • (2002) J. MoL Biol , vol.378 , pp. 417-428
    • Cui, M.1    Shen, J.2    Briggs, J.M.3    Fu, W.4    Wu, J.5    Zhang, Y.6    Luo, X.7    Chi, Z.8    Ji, R.9    Jiang, H.10    Chen, K.11
  • 23
    • 14244273182 scopus 로고    scopus 로고
    • Theory and application of the Generalized Born solvation model in macromolecular simulations
    • Tsui, V.; Case, D. A. Theory and application of the Generalized Born solvation model in macromolecular simulations. Biopolymers 2001, 56, 275-291.
    • (2001) Biopolymers , vol.56 , pp. 275-291
    • Tsui, V.1    Case, D.A.2
  • 24
    • 0001398008 scopus 로고    scopus 로고
    • How well does a RESP (Restrained Electrostatic Potential) Model do in calculating the conformational energies of organic and biological molecules?
    • Wang, J.; Cieplak, P.; Kollman, P. A. How well does a RESP (Restrained Electrostatic Potential) Model do in calculating the conformational energies of organic and biological molecules? J. Comput. Chem. 2000, 21, 1049-1074.
    • (2000) J. Comput. Chem , vol.21 , pp. 1049-1074
    • Wang, J.1    Cieplak, P.2    Kollman, P.A.3
  • 25
    • 33847345552 scopus 로고    scopus 로고
    • + channel with its specific Bekm-1 peptide: Insights into the selectivity of molecular recognition
    • + channel with its specific Bekm-1 peptide: insights into the selectivity of molecular recognition. J. Proteome Res. 2007,6,611.
    • (2007) J. Proteome Res , vol.6 , pp. 611
    • Yi, H.1    Cao, Z.J.2    Yin, S.3    Dai, C.4    Wu, Y.L.5    Li, W.X.6
  • 27
    • 9144254527 scopus 로고    scopus 로고
    • Potassium channel blockade by the sea anemone toxin ShK for the treatment of multiple sclerosis and other autoimmune diseases
    • Norton, R. S.; Pennington, M. W.; Wulff, H. Potassium channel blockade by the sea anemone toxin ShK for the treatment of multiple sclerosis and other autoimmune diseases. Curr. Med. Chem. 2004. 11, 3041-3052.
    • (2004) Curr. Med. Chem , vol.11 , pp. 3041-3052
    • Norton, R.S.1    Pennington, M.W.2    Wulff, H.3
  • 28
    • 0033568644 scopus 로고    scopus 로고
    • Computational alanine scanning to probe protein-protein interactions: A novel approach to evalute binding free energies
    • Massova, I.; Kollman, P. A. Computational alanine scanning to probe protein-protein interactions: a novel approach to evalute binding free energies. J. Am. Chem. Soc. 1999, 121, 8133-8143.
    • (1999) J. Am. Chem. Soc , vol.121 , pp. 8133-8143
    • Massova, I.1    Kollman, P.A.2
  • 31
    • 85128250397 scopus 로고    scopus 로고
    • 22 a potent Kvl.3-specific immunosuppressive polypeptide. J. Biol. Chem. 1998, 273, 32697-32707.
    • 22 a potent Kvl.3-specific immunosuppressive polypeptide. J. Biol. Chem. 1998, 273, 32697-32707.
  • 32
    • 0037044313 scopus 로고    scopus 로고
    • Mutating a critical lysine in ShK toxin alters its binding configuration in the pore-vestibule region of the voltage-gated potassium channel, Kv1.3
    • Lanigan, M. D.; Kalman, K.; Lefievre, Y.; Pennington, M. W.; Chandy, G.; Norton, R. S. Mutating a critical lysine in ShK toxin alters its binding configuration in the pore-vestibule region of the voltage-gated potassium channel, Kv1.3. Biochemistry 2002, 41, 11963-11971.
    • (2002) Biochemistry , vol.41 , pp. 11963-11971
    • Lanigan, M.D.1    Kalman, K.2    Lefievre, Y.3    Pennington, M.W.4    Chandy, G.5    Norton, R.S.6
  • 33
    • 22844448219 scopus 로고    scopus 로고
    • A variable residue in the pore of Kv1 channels is critical for the high affinity of blockers from sea anemones and scorpions
    • Gilquin, B.; Braud, S.; Eriksson, M. A. L.; Roux, B.; Bailey, T. D.; Priest, B. T.; Garcia, M. L.; Menez, A.; Gasparini, S. A variable residue in the pore of Kv1 channels is critical for the high affinity of blockers from sea anemones and scorpions. J. Biol. Chem. 2005, 280, 27093-27102.
    • (2005) J. Biol. Chem , vol.280 , pp. 27093-27102
    • Gilquin, B.1    Braud, S.2    Eriksson, M.A.L.3    Roux, B.4    Bailey, T.D.5    Priest, B.T.6    Garcia, M.L.7    Menez, A.8    Gasparini, S.9
  • 34
    • 6944247603 scopus 로고    scopus 로고
    • Mapping of maurotoxin binding sites on hKvl.2, hKvl.3, and hIKCal channels
    • Visan, V.; Fajloun, Z.; Sabatier, J. M.; Grissmer, S. Mapping of maurotoxin binding sites on hKvl.2, hKvl.3, and hIKCal channels. Mol. Pharmacol. 2004, 66, 1103-1112.
    • (2004) Mol. Pharmacol , vol.66 , pp. 1103-1112
    • Visan, V.1    Fajloun, Z.2    Sabatier, J.M.3    Grissmer, S.4
  • 35
    • 14044270108 scopus 로고    scopus 로고
    • Contribution of the functional dyad of animal toxins acting on voltage-gated Kv1-type channels
    • Mouhat, S.; De Waard, M.; Sabatier, J. M. Contribution of the functional dyad of animal toxins acting on voltage-gated Kv1-type channels. J. Pept. Sci. 2004, 11, 65-68
    • (2004) J. Pept. Sci , vol.11 , pp. 65-68
    • Mouhat, S.1    De Waard, M.2    Sabatier, J.M.3
  • 36
    • 33645858263 scopus 로고    scopus 로고
    • Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR
    • Lange, A.; Giller, K.; Hornig, S.; Martin-Eauclaire, M. F.; Pongs, O.; Becker, S.; Baldus, M. Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR. Nature 2006, 440, 959-962.
    • (2006) Nature , vol.440 , pp. 959-962
    • Lange, A.1    Giller, K.2    Hornig, S.3    Martin-Eauclaire, M.F.4    Pongs, O.5    Becker, S.6    Baldus, M.7


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