The phylogeny and evolution of Figitidae (Hymenoptera: Cynipoidea)

Cladistics

Volumn 23, Issue 5, 2007, Pages 403-431

  Buffington, Matthew L ^a,c   Nylander, Johan A A ^b   Heraty, John M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b FLORIDA STATE UNIVERSITY   (United States)

^c U S DEPARTMENT OF AGRICULTURE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BAYESIAN ANALYSIS; EVOLUTION; INSECT; LIFE HISTORY; PARASITOID; PARSIMONY ANALYSIS; PHYLOGENY; TAXONOMY;

APHIDIDAE; ASPICERINAE; CYNIPOIDEA; EUCEROPTRES; FIGITIDAE; FIGITINAE; HEXAPODA; HYMENOPTERA; MELANIPS; THRASORINAE;

EID: 34848884035     PISSN: 07483007     EISSN: 10960031     Source Type: Journal    
DOI: 10.1111/j.1096-0031.2007.00153.x     Document Type: Article

References (86)

1. Babcock, C.S., Heraty, J.M., 2000. Molecular markers distinguishing Encarsia formosa and Encarsia luteola (Hymenoptera: Aphelinidae). Ann. Entomol. Soc. Am. 93, 738 744.
2. Babcock, C.S., Heraty, J.M., DeBarro, P.J., Driver, F., Schmidt, S., 2001. Preliminary phylogeny of Encarsia Förster (Hymenoptera: Aphelinidae) based on morphology and 28S rDNA. Mol. Phylogenet. Evol. 18, 306 323.
3. Baker, R.H., DeSalle, R., 1997. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Syst. Biol. 46, 654 673.
4. Brandley, M.C., Leaché, A.D., Warren, D.L., McGuire, J.A., 2006. Are unequal clade priors problematic for Bayesian phylogenetics? Syst. Biol. 55, 138 146.
5. Brower, A.V.Z., Schawaroch, V., 1996. Three steps of homology assessment. Cladistics, 12, 265 272.
6. Buffington, M., 2000. The phylogeny and classification of the Gronotoma group (s.l.) of genera (Hymenoptera: Figitidae: Eucoilinae). MS Thesis, Texas A&M University.
7. Buffington, M., 2002. A description of Aegeseucoela Buffington, new name, with taxonomic notes on the status of Gronotoma Förster. Proc. Entomol. Soc. Wash. 104, 589 601.
8. Buffington, M.L., Burks, R., McNeil, L., 2005. Advanced techniques for imaging microhymenoptera. Am. Entomol. 51, 50 54.
9. Buffington, M., Liu, Z., Ronquist, F., 2006. Cynipoidea. In: Sharkey, M., Bin, F. (Eds.), Neotropical Hymenoptera. Mem. Amer. Entomol. Inst., 77, 811 824.
10. Cameron, S.A., Derr, J.N., Austin, A.D., Woolley, J.B., Wharton, R.A., 1992. The application of nucleotide sequence data to phylogeny of the Hymenoptera: a review. J. Hymenopt. Res. 1, 63 79.
11. Campbell, B.J.M., Heraty, J.-Y., Rasplus, K., Chan, J., Steffan-Campbell, Babcock, 2000. Molecular systematics of the Chalcidoidea using 28S-D2 rDNA. In: Austin, A., Dowton, M. (Eds.), Hymenoptera: Evolution, Biodiversity and Biological Control. CSIRO Publishing, Melbourne, Australia, pp. 59 73.
12. Cano, R.J., Poinar, H.N., 1993. Rapid isolation of DNA from fossil and museum specimens suitable for PCR. Biotechniques, 15, 432 436.
13. Clausen, C.P., 1940. Entomophagous Insects. McGraw-Hill, New York.
14. Dalla Torre, K.W., Kieffer, J.J., 1910. Cynipidae, Das Teirreich, Vol. 24. Verlag von R. Friedlander und Sohn, Berlin.
15. DeBry, R.W., Olmstead, R.G.O., 2000. A simulation study of reduced tree-search effort in bootstrap resampling analysis. Syst. Biol. 49, 171 179.
16. DePinna, M.C.C., 1991. Concepts and tests of homology in the cladistic paradigm. Cladistics, 7, 367 394.
17. Dowton, M., Austin, A., 2001. Simultaneous analysis of 16S, 28S, COI and morphology in the Hymenoptera: Apocrita - evolutionary transitions among parasitic wasps. Biol. J. Linn. Soc. 74, 87 111.
18. Efron, B., 1986. Why isn't everyone a Bayesian? J. Am. Stat. 40, 1 11.
19. Farris, J.S., 1969. A successive approximations approach to character weighting. Syst. Zool. 18, 374 385.
20. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783 791.
21. Felsenstein, J., 2001. The troubled growth of statistical phylogenetics. Syst. Biol. 50, 465 467.
22. Fergusson, N.D.M., Hanson, 1995. The cynipoid families. In: Hanson, P.E., Gauld, I.D. (Eds.), The Hymenoptera of Costa Rica. The Natural History Museum and Oxford University Press, London, pp. 247 265.
23. Fontal-Cazalla, F.M., Nieves-Aldrey, 1999. Preliminary data on comparative abundance and diversity of eucoilines (Hymenoptera: Figitidae: Eucoilinae) from temperate and tropical areas. In: DeBarro, P. (Ed.), 4th International Hymenopterists Conference, 6-11th January 1999, Canberra, Australia, Program and Abstracts. International Society of Hymenopterists, Canberra, p. 66.
24. Fontal-Cazalla, F.M., Buffington, M., Nordlander, G., Liljeblad, J., Ros-Farré, P., Nieves-Aldrey, J.L., Pujade-Villar, J., Ronquist, F., 2002. Phylogeny of the Eucoilinae (Hymenoptera: Cynipoidea: Figitidae). Cladistics 18, 154 199.
25. Gatesy, J., DeSalle, R., Wheeler, W., 1993. Alignment-ambiguous nucleotide sites and the exclusion of systematic data. Mol. Phylogenet. Evol. 2, 152 157.
26. Gatesy, J., O'Grady, P., Baker, R.H., 1999. Corroboration among data sets in simultaneous analysis: hidden support for phylogenetic relationships among higher level artiodactyl taxa. Cladistics 15, 271 313.
27. Gillespie, J.J., 2004. Characterizing regions of ambiguous alignment caused by the expansion and contraction of hairpin stem-loops in ribosomal RNA molecules. Mol. Phylogenet. Evol. 33, 936 943.
28. Gillespie, J.J., Munro, J.B., Heraty, J.M., Yoder, M.J., Owen, A.K., Carmichael, A.E., 2005. A Secondary Structural Model of the 28S rRNA Expansion Segments D2 and D3 for Chalcidoid wasps (Hymenoptera: Chalcidoidea). Mol. Biol. Evol. 22, 1593 1608.
29. Goloboff, P., 1993. Estimating character weights during tree search. Cladistics 9, 83 91.
30. Grant, T., Kluge, A.C., 2003. Data exploration in phylogenetic inference: scientific, heuristic, or neither. Cladistics 19, 379 418.
31. Gu, X., Fu, Y.-X., Li, W.-H., 1995. Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Mol. Biol. Evol. 12, 546 557.
32. Hellèn, W., 1937. Übersicht der Ibaliinen und Figitinen Finnlands (Hym. Cyn.). Not. Entomol. 17, 65 71.
33. Heraty, J.M., 2003. Molecular systematics, Chalcidoidea and biological control. In: Ehler, L.E., Sforza, R., Mateille, T. (Eds.), Genetics, Evolution and Biological Control. CAB International, Wallingford, Oxon 39 71.
34. Heraty, J.M., Hawks, D., Kostecki, J.S., Carmichael, A.C., 2004. Phylogeny and behaviour of the Gollumiellinae, a new subfamily of the ant-parasitic Eucharitidae (Hymenoptera: Chalcidoidea). Syst. Entomol. 29, 544 559.
35. Holder, M.T., Lewis, P.O., 2003. Phylogeny estimation: Traditional and Bayesian approaches. Nat. Rev. Genet. 4, 275 284.
36. Huelsenbeck, J.P., Larget, B., Miller, R., Ronquist, F., 2002. Potential applications and pitfalls of Bayesian inference of phylogeny. Syst. Biol. 51, 673 688.
37. Huelsenbeck, J.P., Rannala, B., 2004. Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Syst. Biol. 53, 904 913.
38. Huelsenbeck, J.P., Rannala, B., Masly, J.P., 2000. Accommodating phylogenetic uncertainty in evolutionary studies. Science, 288, 2349 2350.
39. Kjer, K., 1995. Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs. Mol. Phylogenet. Evol. 4, 314 330.
40. Lambkin, C., Yeates, D., 2003. Genes, morphology and agreement: congruence in Australian anthracine bee flies (Diptera: Bombyliidae: Anthracinae). Invertebr. Syst. 17, 161 184.
41. Lambkin, C., Lee, M.S.Y., Winterton, S., Yeates, D., 2002. Partioned Bremer support and multiple trees. Cladistics 18, 436 444.
42. Lanave, C., Preparata, C., Saccone, C., Serio, G., 1984. A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20, 86 93.
43. van Lenteren, J.C., Isidoro, N., Biu, F., 1998. Functional anatomy of the ovipositor clip in the parasitoid Leptopilina heterotoma (Thompson) (Hymenoptera: Eucoilidae), a structure to grip escaping larvae. Int. J. Insect. Morphol. Embryol. 27, 263 268.
44. Lewis, P.O., 2001. A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol. 50, 913 925.
45. Lewis, P.O., Holder, M.T., Holsinger, K.E., 2005. Polytomies and Bayesian phylogenetic inference. Syst. Biol. 54, 241 253.
46. Lin, C.P., Danforth, B., 2004. How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined data sets. Mol. Phylogenet. Evol. 30, 686 702.
47. Löytynoja, A., Milinkovitch, M.C., 2002. Proalign, a Probablistic Multiple Alignment Program, Version 0.5a0. Brussels, Belgium. Program download at http://www.ulb.ac.be/sciences/ueg/.
48. Miller, G.L., Lambdin, P.L., 1985. Observations on Anacharis melanoneura (Hymenoptera: Figitidae), a parasite of Hemerobius stigma (Neuroptera: Hemerobiidae). Entomol. News 96, 93 97.
49. Narayanan, E.S., 1941. Notes on some Indian parasitic Hymenoptera with descriptions of a new cynipid. Ind. J. Entomol. 3, 59 63.
50. Nieves-Aldrey, J.L., Fontal-Cazalla, 1997. Inventario de himenópteros parasitoides Cynipoidea y Chalcidoidea (Insecta, Hymenoptera. In: Castroviejo, S. (Ed.), Flora Y Fauna Del Parque Nacional de Coiba (Panamá). Inventario Preliminar. Agencia Española de Cooperación Internacional, Madrid, pp. 375 397.
51. Nixon, K.C., Carpenter, J.M., 1996. On simultaneous analysis. Cladistics 12, 221 242.
52. Nordlander, G., 1982. Systematics and phylogeny of an interrelated group of genera within the family Eucoilidae (Insecta: Hymenoptera, Cynipoidea). [Doctoral Dissertation. ] University of Stockholm, Sweden.
53. Nordlander, G., 1984. [What do we know about parasitic cynipoids (Hymenoptera) ?][in Swedish] Entomol. Tidskr. 105, 36 40.
54. Nylander, J.A.A., Ronquist, F., Huelsenbeck, J.P., Nieves-Aldrey, J.L., 2004. Bayesian phylogenetic analysis of combined data. Syst. Biol. 53, 47 67.
55. Nylander, J.A.A., Buffington, M.L., Liu, Z., Nieves-Aldrey, J., Liljeblad, J., Ronquist, F. In prep. Molecular phylogeny and evolution of gall wasps.
56. Ouvrard, D., Campbell, B., Bourgoin, T., Chan, K., 2000. 18S rRNA secondary structure and phylogenetic position of Peloridiidae (Insecta: Hemiptera). Mol. Biol. Evol. 16, 403 417.
57. Posada, D., Crandall, K.A., 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817 818.
58. Randle, C.P., Pickett, K.M., 2006. Are nonuniform clade priors important in Bayesian phylogenetic analysis? A response to Brandley et al. 2006. Syst. Biol. 55, 147 151.
59. Redelings, B.D., Suchard, M.A., 2005. Joint Bayesian estimation of alignment and phylogeny. Syst. Biol. 54, 401 418.
60. Rokas, A., Nylander, J.A.A., Ronquist, F., Stone, G., 2002. A maximum-likelihood analysis of eight phylogenetic markers in gall wasps (Hymenoptera: Cynipidae): implications for insect phylogenetic studies. Mol. Phylogenet. Evol. 22, 206 219.
61. Ronquist, F., 1994. Evolution of parasitism among closely related species: Phylogenetic relationships and the origin of inquilinism in gall wasps (Hymenoptera, Cynipidae). Evolution 48, 241 266.
62. Ronquist, F., 1995. Phylogeny and early evolution of the Cynipoidea (Hymenoptera). Syst. Entomol. 20, 309 335.
63. Ronquist, F., 1999. Phylogeny, classification and evolution of the Cynipoidea. Zool. Scr. 28, 139 164.
64. Ronquist, F., Huelsenbeck, J.P., 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572 1574.
65. Ronquist, F., Nieves-Aldrey, J.L., 2001. A new subfamily of Figitidae (Hymenoptera, Cynipoidea). Zool. J. Linn. Soc. 133, 483 494.
66. Ronquist, F., Rasnitsyn, A.P., Roy, A., Eriksson, K., Lindgren, M., 1999. Phylogeny of the Hymenoptera: a cladistic reanalysis of Rasnitsyn's (1988) data. Zoo. Scr. 28, 13 50.
67. Ros-Farré, P., Ronquist, F., Pujade-Villar, J., 2000. Redescription of Acanthaegilips Ashmead, 1897, with characterization of the Anacharitinae and Aspiceratinae (Hymenoptera: Cynipoidea: Figitidae). Zool. J. Linn. Soc. 129, 467 488.
68. Sanchis, A., Latorre, A., Gonzalez-Candelas, F., Michelena, J.M., 2000. An 18S rDNA based molecular phylogeny of Aphidiinae (Hymenoptera: Braconidae). Mol. Phylogenet. Evol. 14, 180 194.
69. Sanderson, M.J., Kim, J., 2000. Parametric phylogenetics? Syst. Biol. 49, 817 829.
70. Schulmeister, S., 2003. Simultaneous analysis of basal Hymenoptera (Insecta): introducing robust-choice sensitivity analysis. Biol. J. Linn. Soc. 79, 245 275.
71. Schulmeister, S., Wheeler, W.C., Carpenter, J.M., 2002. Simultaneous analysis of the basal lineages of Hymenoptera (Insecta) using sensitivity analysis. Cladistics 18, 455 484.
72. Simon, C., Frati, F., Beckenback, A., Crespi, B., Liu, H., Flook, P., 1994. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved PCR primers. Ann. Entomol. Soc. Am. 87, 651 701.
73. Sorenson, M.D., 1999. TreeRot, Version 2C. Boston University, Boston, MA.
74. Steel, M., 2005. Should phylogenetic models be trying to 'fit an elephant'? Trends. Genet. 21, 307 309.
75. Stuart, G.W., Moffett, K., Baker, S., 2002. Integrated gene and species phylogenies from unaligned whole genome sequence. Bioinformatics 18, 100 108.
76. Swofford, D., 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. Sinauer Associates, Sunderland, MA.
77. Tavaré, S., 1986. Some probablistic and statistical problems on the analysis of DNA sequences. Lec. Math. Life Sci. 17, 57 86.
78. Thornton, J.W., Kolaczkowski, B., 2005. No magic pill for phylogenetic error. Trends. Genet. 21, 310 311.
79. Vårdal, H., Sahlén, G., Ronquist, F., 2003. Morphology and evolution of the cynipoid egg (Hymenoptera). Zool. J. Linn. Soc. 139, 247 260.
80. Weld, L., 1952. Cynipoidea (Hym.) 1905-50. Privately Printed, Ann Arbor, MI.
81. Wheeler, W., 1995. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Syst. Biol. 44, 321 331.
82. Wheeler, W., 1996. Optimization alignment: The end of multiple sequence alignment in phylogenetics? Cladistics 12, 1 9.
83. Wiegmann, B.M., Mitter, C., Regier, J.C., Friedlander, T.P., Wagner, D.M., Nielsen, E.S., 2000. Nuclear genes resolve Mesozoic-aged divergences in the insect order Lepidoptera. Mol. Phylogenet. Evol. 15, 242 259.
84. Winterton, S.L., Yang, L., Wiegmann, B.M., Yeates, D., 2001. Phylogenetic revision of Agapophytinae subf. n. (Diptera: Therevidae) based on molecular and morphological evidence. Syst. Entomol. 26, 173 211.
85. Yang, Z., 1994. Maximum-likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39, 306 314.
86. Yang, Z., Rannala, B., 2005. Branch-length prior influences Bayesian posterior probability of phylogeny. Syst. Biol. 54, 455 470.