-
1
-
-
33747845916
-
MAGIIC-PRO: Detecting functional signatures by efficient discovery of long patterns in protein sequences
-
34 Web Server 1538832 16845025 10.1093/nar/gkl309
-
Hsu CM Chen CY Liu BJ MAGIIC-PRO: Detecting functional signatures by efficient discovery of long patterns in protein sequences Nucleic Acids Res 2006 34 Web Server W356-W361 1538832 16845025 10.1093/nar/gkl309
-
(2006)
Nucleic Acids Res
-
-
Hsu, C.M.1
Chen, C.Y.2
Liu, B.J.3
-
2
-
-
0023660653
-
Prediction of protein secondary structure and active sites using the alignment of homologous sequences
-
10.1016/0022-2836(87)90501-8 3656439
-
Zvelvbil MJ Barton GJ Taylor WR Sternberg MJ Prediction of protein secondary structure and active sites using the alignment of homologous sequences J Mol Biol 1987, 195:957-961 10.1016/0022-2836(87)90501-8 3656439
-
(1987)
J Mol Biol
, vol.195
, pp. 957-961
-
-
Zvelvbil, M.J.1
Barton, G.J.2
Taylor, W.R.3
Sternberg, M.J.4
-
3
-
-
0024373407
-
Conservation of residue interactions in a family of Ca-binding proteins
-
10.1093/protein/2.8.589 2813336
-
Godzik A Sander C Conservation of residue interactions in a family of Ca-binding proteins Protein Eng 1989, 2:589-596 10.1093/protein/2.8.589 2813336
-
(1989)
Protein Eng
, vol.2
, pp. 589-596
-
-
Godzik, A.1
Sander, C.2
-
4
-
-
0036681416
-
Scoring residue conservation
-
10.1002/prot.10146 12112692
-
Valdar WS Scoring residue conservation Proteins 2002, 48:227-241 10.1002/ prot.10146 12112692
-
(2002)
Proteins
, vol.48
, pp. 227-241
-
-
Valdar, W.S.1
-
5
-
-
0027764344
-
Protein sequence alignments: A strategy for the hierarchical analysis of residue conservation
-
8143162
-
Livingstone CD Barton GJ Protein sequence alignments: A strategy for the hierarchical analysis of residue conservation Comput Appl Biosci 1993, 9:745-756 8143162
-
(1993)
Comput Appl Biosci
, vol.9
, pp. 745-756
-
-
Livingstone, C.D.1
Barton, G.J.2
-
6
-
-
0029587166
-
A method to predict functional residues in proteins
-
10.1038/nsb0295-171 7749921
-
Casari G Sander C Valencia A A method to predict functional residues in proteins Nat Struct Biol 1995, 2:171-178 10.1038/nsb0295-171 7749921
-
(1995)
Nat Struct Biol
, vol.2
, pp. 171-178
-
-
Casari, G.1
Sander, C.2
Valencia, A.3
-
7
-
-
0035896024
-
ConSurf: An algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information
-
10.1006/jmbi.2000.4474 11243830
-
Armon A Graur D Ben-Tal N ConSurf: An algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information J Mol Biol 2001, 307:447-463 10.1006/ jmbi.2000.4474 11243830
-
(2001)
J Mol Biol
, vol.307
, pp. 447-463
-
-
Armon, A.1
Graur, D.2
Ben-Tal, N.3
-
8
-
-
0037435031
-
From words to literature in structural proteomics
-
10.1038/nature01513 12634795
-
Sali A From words to literature in structural proteomics Nature 2003, 422:216-225 10.1038/nature01513 12634795
-
(2003)
Nature
, vol.422
, pp. 216-225
-
-
Sali, A.1
-
9
-
-
23444452564
-
Probabilistic model of the human protein-protein interaction network
-
10.1038/nbt1103 16082366
-
Rhodes DR Probabilistic model of the human protein-protein interaction network Nat Biotechnol 2005, 23:951-959 10.1038/nbt1103 16082366
-
(2005)
Nat Biotechnol
, vol.23
, pp. 951-959
-
-
Rhodes, D.R.1
-
10
-
-
0028861437
-
Elusive affinities
-
10.1002/prot.340210105 7716167
-
Janin J Elusive affinities Proteins 1995, 21:30-39 10.1002/ prot.340210105 7716167
-
(1995)
Proteins
, vol.21
, pp. 30-39
-
-
Janin, J.1
-
11
-
-
0031450506
-
Hydrogen bonds and salt bridges across protein-protein interfaces
-
10.1093/protein/10.9.999 9464564
-
Xu D Hydrogen bonds and salt bridges across protein-protein interfaces Protein Eng 1997, 10:999-1012 10.1093/protein/10.9.999 9464564
-
(1997)
Protein Eng
, vol.10
, pp. 999-1012
-
-
Xu, D.1
-
12
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
10.1006/jmbi.1998.2439 9925793
-
Lo Conte L Chothia C Janin J The atomic structure of protein-protein recognition sites J Mol Biol 1999, 285:2177-2198 10.1006/jmbi.1998.2439 9925793
-
(1999)
J Mol Biol
, vol.285
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
13
-
-
0036468670
-
Evolutionary predictions of binding surfaces and interactions
-
10.1016/S0959-440X(02)00284-1 11839485
-
Lichtarge O Sowa ME Evolutionary predictions of binding surfaces and interactions Curr Opin Struct Biol 2002, 12:21-27 10.1016/ S0959-440X(02)00284-1 11839485
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 21-27
-
-
Lichtarge, O.1
Sowa, M.E.2
-
14
-
-
0029913807
-
An evolutionary trace method defines binding surfaces common to protein families
-
10.1006/jmbi.1996.0167 8609628
-
Lichtarge O Bourne HR Cohen FE An evolutionary trace method defines binding surfaces common to protein families J Mol Biol 1996, 257:342-358 10.1006/jmbi.1996.0167 8609628
-
(1996)
J Mol Biol
, vol.257
, pp. 342-358
-
-
Lichtarge, O.1
Bourne, H.R.2
Cohen, F.E.3
-
15
-
-
0032479179
-
Anatomy of hot spots in protein interfaces
-
10.1006/jmbi.1998.1843 9653027
-
Bogan AA Thorn KS Anatomy of hot spots in protein interfaces J Mol Biol 1998, 280(1):1-9 10.1006/jmbi.1998.1843 9653027
-
(1998)
J Mol Biol
, vol.280
, Issue.1
, pp. 1-9
-
-
Bogan, A.A.1
Thorn, K.S.2
-
16
-
-
0035066602
-
ASEdb: A database of alanine mutations and their effects on the free energy of binding in protein interactions
-
10.1093/bioinformatics/17.3.284 11294795
-
Thorn KS Bogan AA ASEdb: A database of alanine mutations and their effects on the free energy of binding in protein interactions Bioinformatics 2001, 17:284-285 10.1093/bioinformatics/17.3.284 11294795
-
(2001)
Bioinformatics
, vol.17
, pp. 284-285
-
-
Thorn, K.S.1
Bogan, A.A.2
-
17
-
-
11844249426
-
Hot regions in protein-protein interactions: The organization and contribution of structurally conserved hot spot residues
-
10.1016/j.jmb.2004.10.077 15644221
-
Keskin O Ma B Nussinov R Hot regions in protein-protein interactions: the organization and contribution of structurally conserved hot spot residues J Mol Biol 2005, 345:1281-1294 10.1016/j.jmb.2004.10.077 15644221
-
(2005)
J Mol Biol
, vol.345
, pp. 1281-1294
-
-
Keskin, O.1
Ma, B.2
Nussinov, R.3
-
19
-
-
0028916599
-
A hot spot of binding energy in a hormone-receptor interface
-
10.1126/science.7529940 7529940
-
Clackson T Wells JA A hot spot of binding energy in a hormone-receptor interface Science 1995, 267:383-386 10.1126/science.7529940 7529940
-
(1995)
Science
, vol.267
, pp. 383-386
-
-
Clackson, T.1
Wells, J.A.2
-
20
-
-
7944225979
-
Protein-protein interactions: Hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: Implications for docking
-
10.1016/j.jmb.2004.09.051 15533445
-
Li X Keskin O Ma B Nussinov R Liang J Protein-protein interactions: Hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: Implications for docking J Mol Biol 2004, 344:781-795 10.1016/j.jmb.2004.09.051 15533445
-
(2004)
J Mol Biol
, vol.344
, pp. 781-795
-
-
Li, X.1
Keskin, O.2
Ma, B.3
Nussinov, R.4
Liang, J.5
-
21
-
-
0037609791
-
Protein-protein interactions: Structurally conserved residues distinguish between binding sites and exposed protein surfaces
-
156276 12730379 10.1073/pnas.1030237100
-
Ma B Elkayam T Wolfson H Nussinov R Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces Proceedings of the National Academy of Sciences of the United States of America 2003, 100(10):5772-5777 156276 12730379 10.1073/pnas.1030237100
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.10
, pp. 5772-5777
-
-
Ma, B.1
Elkayam, T.2
Wolfson, H.3
Nussinov, R.4
-
22
-
-
1042275583
-
A dissecting of specific and non-specific protein-protein interfaces
-
10.1016/j.jmb.2003.12.073 15095871
-
Bahadur RP A dissecting of specific and non-specific protein-protein interfaces J Mol Biol 2004, 336:943-955 10.1016/j.jmb.2003.12.073 15095871
-
(2004)
J Mol Biol
, vol.336
, pp. 943-955
-
-
Bahadur, R.P.1
-
23
-
-
0037093645
-
Dissecting protein-protein recognition sites
-
10.1002/prot.10085 11948787
-
Chakrabarti P Janin J Dissecting protein-protein recognition sites Proteins 2002, 47:334-343 10.1002/prot.10085 11948787
-
(2002)
Proteins
, vol.47
, pp. 334-343
-
-
Chakrabarti, P.1
Janin, J.2
-
24
-
-
0016708122
-
Principles of protein-protein recognition
-
10.1038/256705a0 1153006
-
Chotia C Janin J Principles of protein-protein recognition Nature 1975, 256:705-708 10.1038/256705a0 1153006
-
(1975)
Nature
, vol.256
, pp. 705-708
-
-
Chotia, C.1
Janin, J.2
-
26
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
10.1006/jmbi.1998.2439 9925793
-
Lo Conte L The atomic structure of protein-protein recognition sites J Mol Biol 1999, 285(5):2177-2198 10.1006/jmbi.1998.2439 9925793
-
(1999)
J Mol Biol
, vol.285
, Issue.5
, pp. 2177-2198
-
-
Lo Conte, L.1
-
27
-
-
0037474541
-
Structural characterization and functional significance of transient protein-protein interactions
-
10.1016/S0022-2836(02)01281-0 12527304
-
Nooren IMA Thornton JM Structural characterization and functional significance of transient protein-protein interactions J Mol Biol 2003, 325:991-1018 10.1016/S0022-2836(02)01281-0 12527304
-
(2003)
J Mol Biol
, vol.325
, pp. 991-1018
-
-
Nooren, I.M.A.1
Thornton, J.M.2
-
28
-
-
0037229456
-
Analysing six types of protein-protein interfaces
-
10.1016/S0022-2836(02)01223-8 12488102
-
Ofran Y Rost B Analysing six types of protein-protein interfaces J Mol Biol 2003, 325:377-387 10.1016/S0022-2836(02)01223-8 12488102
-
(2003)
J Mol Biol
, vol.325
, pp. 377-387
-
-
Ofran, Y.1
Rost, B.2
-
29
-
-
0031565729
-
Analysis of protein-protein interaction sites using surface patches
-
10.1006/jmbi.1997.1234 9299342
-
Jones S Thornton JM Analysis of protein-protein interaction sites using surface patches J Mol Biol 1997, 272:121-132 10.1006/jmbi.1997.1234 9299342
-
(1997)
J Mol Biol
, vol.272
, pp. 121-132
-
-
Jones, S.1
Thornton, J.M.2
-
30
-
-
0031565725
-
Prediction of protein-protein interaction site using surface patches
-
10.1006/jmbi.1997.1233 9299343
-
Jones S Thornton JM Prediction of protein-protein interaction site using surface patches J Mol Biol 1997, 272:133-143 10.1006/jmbi.1997.1233 9299343
-
(1997)
J Mol Biol
, vol.272
, pp. 133-143
-
-
Jones, S.1
Thornton, J.M.2
-
31
-
-
1842526090
-
ProMate: A structure based prediction program to identify the location of protein-protein binding sites
-
10.1016/j.jmb.2004.02.040 15050833
-
Neuvirth H Raz R Schreiber G ProMate: A structure based prediction program to identify the location of protein-protein binding sites J Mol Biol 2004, 338:181-199 10.1016/j.jmb.2004.02.040 15050833
-
(2004)
J Mol Biol
, vol.338
, pp. 181-199
-
-
Neuvirth, H.1
Raz, R.2
Schreiber, G.3
-
32
-
-
33745597909
-
Predicting protein interaction sites: Binding hot-spots in protein-protein and protein-ligand interfaces
-
10.1093/bioinformatics/btl079 16522669
-
Burgoyne NJ Jackson RM Predicting protein interaction sites: Binding hot-spots in protein-protein and protein-ligand interfaces Bioinformatics 2006, 22:1335-1342 10.1093/bioinformatics/btl079 16522669
-
(2006)
Bioinformatics
, vol.22
, pp. 1335-1342
-
-
Burgoyne, N.J.1
Jackson, R.M.2
-
33
-
-
33747150197
-
Protein binding site prediction using an empirical scoring function
-
1540721 16893954 10.1093/nar/gkl454
-
Liang S Zhang C Song L Zhou Y Protein binding site prediction using an empirical scoring function Nucleic Acids Res 2006, 34:3698-3707 1540721 16893954 10.1093/nar/gkl454
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3698-3707
-
-
Liang, S.1
Zhang, C.2
Song, L.3
Zhou, Y.4
-
34
-
-
0036122073
-
Prediction of protein-protein interaction sites in heterocomplexes with neural networks
-
10.1046/j.1432-1033.2002.02767.x 11874449
-
Fariselli P Pazos F Valencia A Casadio R Prediction of protein-protein interaction sites in heterocomplexes with neural networks Eur J Biochem 2002, 269:1356-1361 10.1046/j.1432-1033.2002.02767.x 11874449
-
(2002)
Eur J Biochem
, vol.269
, pp. 1356-1361
-
-
Fariselli, P.1
Pazos, F.2
Valencia, A.3
Casadio, R.4
-
35
-
-
17444372787
-
Improved prediction of protein-protein binding sites using a support vector machines approach
-
10.1093/bioinformatics/bti242 15613384
-
Bradford JR Westhead DR Improved prediction of protein-protein binding sites using a support vector machines approach Bioinformatics 2005, 21(8):1487-1494 10.1093/bioinformatics/bti242 15613384
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1487-1494
-
-
Bradford, J.R.1
Westhead, D.R.2
-
36
-
-
1842454912
-
Prediction of functional sites by analysis of sequence and structure conservation
-
10.1110/ps.03465504 15010543
-
Panchenko AR Kondrashov F Bryant S Prediction of functional sites by analysis of sequence and structure conservation Protein Science 2004, 13:884-892 10.1110/ps.03465504 15010543
-
(2004)
Protein Science
, vol.13
, pp. 884-892
-
-
Panchenko, A.R.1
Kondrashov, F.2
Bryant, S.3
-
37
-
-
0346733329
-
Are protein-protein interfaces more conserved in sequence than the rest of the protein surface
-
10.1110/ps.03323604 14691234
-
Caffrey DR Are protein-protein interfaces more conserved in sequence than the rest of the protein surface Protein Science 2004, 13:190-202 10.1110/ps.03323604 14691234
-
(2004)
Protein Science
, vol.13
, pp. 190-202
-
-
Caffrey, D.R.1
-
38
-
-
0034213559
-
Conservation of polar residues as hot spots at protein interfaces
-
10.1002/(SICI)1097-0134(20000601)39:4<331::AID-PROT60>3.0.CO;2-A 10813815
-
Hu Z Ma B Wolfson H Nussinov R Conservation of polar residues as hot spots at protein interfaces Proteins 2000, 39:331-342 10.1002/ (SICI)1097-0134(20000601)39:4<331::AID-PROT60>3.0.CO;2-A 10813815
-
(2000)
Proteins
, vol.39
, pp. 331-342
-
-
Hu, Z.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
40
-
-
0035838976
-
Automated structure-based prediction of functional sites in proteins: Applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking
-
10.1006/jmbi.2001.4870 11478868
-
Aloy P Querol E Aviles FX Sternberg MJ Automated structure-based prediction of functional sites in proteins: Applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking J Mol Biol 2001, 311:395-408 10.1006/ jmbi.2001.4870 11478868
-
(2001)
J Mol Biol
, vol.311
, pp. 395-408
-
-
Aloy, P.1
Querol, E.2
Aviles, F.X.3
Sternberg, M.J.4
-
41
-
-
19544369864
-
An evolution based classifier for prediction of protein interfaces without using protein structures
-
10.1093/bioinformatics/bti340 15728113
-
Res I Mihalek I Lichtarge O An evolution based classifier for prediction of protein interfaces without using protein structures Bioinformatics 2005, 21:2496-2501 10.1093/bioinformatics/bti340 15728113
-
(2005)
Bioinformatics
, vol.21
, pp. 2496-2501
-
-
Res, I.1
Mihalek, I.2
Lichtarge, O.3
-
42
-
-
0038356582
-
Predicted protein-protein interaction sites from local sequence information
-
10.1016/S0014-5793(03)00456-3 12782323
-
Ofran Y Rost B Predicted protein-protein interaction sites from local sequence information FEBS Lett 2003, 544:236-239 10.1016/ S0014-5793(03)00456-3 12782323
-
(2003)
FEBS Lett
, vol.544
, pp. 236-239
-
-
Ofran, Y.1
Rost, B.2
-
43
-
-
13244292990
-
A two-stage classifier for identification of protein-protein interface residues
-
10.1093/bioinformatics/bth920 15262822
-
Yan C A two-stage classifier for identification of protein-protein interface residues Bioinformatics 2004, 20(Suppl 1):i371-i378 10.1093/ bioinformatics/bth920 15262822
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Yan, C.1
-
44
-
-
0036300444
-
Structural clusters of evolutionary trace residues are statistically significant and common in proteins
-
10.1006/jmbi.2001.5327 11829509
-
Madabushi S Yao H Marsh M Kristensen DM Philippi A Sowa ME Lichtarge O Structural clusters of evolutionary trace residues are statistically significant and common in proteins J Mol Biol 2002, 316(1):139-154 10.1006/jmbi.2001.5327 11829509
-
(2002)
J Mol Biol
, vol.316
, Issue.1
, pp. 139-154
-
-
Madabushi, S.1
Yao, H.2
Marsh, M.3
Kristensen, D.M.4
Philippi, A.5
Sowa, M.E.6
Lichtarge, O.7
-
45
-
-
0034730415
-
A fast method to predict protein interaction sites from sequences
-
10.1006/jmbi.2000.4092 10993732
-
Gallet X Charloteaux B Thomas A Brasseur R A fast method to predict protein interaction sites from sequences J Mol Biol 2000, 302(4):917-926 10.1006/jmbi.2000.4092 10993732
-
(2000)
J Mol Biol
, vol.302
, Issue.4
, pp. 917-926
-
-
Gallet, X.1
Charloteaux, B.2
Thomas, A.3
Brasseur, R.4
-
46
-
-
13844256245
-
Mining sequential patterns by pattern-growth: The PrefixSpan approach
-
10.1109/TKDE.2004.77
-
Pei J Han J Mortazavi-Asl B Wang J Pinto H Chen Q Dayal U Hsu MC Mining sequential patterns by pattern-growth: The PrefixSpan approach IEEE Transactions on Knowledge and Data Engineering 2004, 16:1424-1440 10.1109/TKDE.2004.77
-
(2004)
IEEE Transactions on Knowledge and Data Engineering
, vol.16
, pp. 1424-1440
-
-
Pei, J.1
Han, J.2
Mortazavi-Asl, B.3
Wang, J.4
Pinto, H.5
Chen, Q.6
Dayal, U.7
Hsu, M.C.8
-
48
-
-
0031684427
-
Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm
-
10.1093/bioinformatics/14.1.55 9520502
-
Rigoutsos I Floratos A Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm Bioinformatics 1998, 14:55-67 10.1093/ bioinformatics/14.1.55 9520502
-
(1998)
Bioinformatics
, vol.14
, pp. 55-67
-
-
Rigoutsos, I.1
Floratos, A.2
-
49
-
-
0030670589
-
Efficient discovery of conserved patterns using a pattern graph
-
9367124
-
Jonassen I Efficient discovery of conserved patterns using a pattern graph Comput Appl Biosci 1997, 13:509-522 9367124
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 509-522
-
-
Jonassen, I.1
-
50
-
-
0034123819
-
SPLASH: Structural pattern localization analysis by sequential histograms
-
10.1093/bioinformatics/16.4.341 10869032
-
Califano A SPLASH: Structural pattern localization analysis by sequential histograms Bioinformatics 2000, 16(4):341-347 10.1093/ bioinformatics/16.4.341 10869032
-
(2000)
Bioinformatics
, vol.16
, Issue.4
, pp. 341-347
-
-
Califano, A.1
-
52
-
-
0035853280
-
Three-dimensional cluster analysis identifies interfaces and functional residue clusters in protein
-
10.1006/jmbi.2001.4540 11292355
-
Landgraf R Xenarios I Eisenberg D Three-dimensional cluster analysis identifies interfaces and functional residue clusters in protein J Mol Biol 2001, 307:1487-1502 10.1006/jmbi.2001.4540 11292355
-
(2001)
J Mol Biol
, vol.307
, pp. 1487-1502
-
-
Landgraf, R.1
Xenarios, I.2
Eisenberg, D.3
-
53
-
-
0033954256
-
The Protein Data Bank
-
102472 10592235 10.1093/nar/28.1.235
-
Berman HM The Protein Data Bank Nucleic Acids Res 2000, 28:235-242 102472 10592235 10.1093/nar/28.1.235
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
-
54
-
-
21644480883
-
Protein-Protein Docking Benchmark 2.0: An update
-
10.1002/prot.20560 15981264
-
Mintseris J Wiehe K Pierce B Anderson R Chen R Janin J Weng Z Protein-Protein Docking Benchmark 2.0: An update Proteins 2005, 60(2):214-216 10.1002/prot.20560 15981264
-
(2005)
Proteins
, vol.60
, Issue.2
, pp. 214-216
-
-
Mintseris, J.1
Wiehe, K.2
Pierce, B.3
Anderson, R.4
Chen, R.5
Janin, J.6
Weng, Z.7
-
55
-
-
33745634395
-
CD-HIT: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
10.1093/bioinformatics/btl158 16731699
-
Li W Godzik A CD-HIT: A fast program for clustering and comparing large sets of protein or nucleotide sequences Bioinformatics 2006, 22:1658-1659 10.1093/bioinformatics/btl158 16731699
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
57
-
-
0038675537
-
Conserved residue clustering and protein structure prediction
-
10.1002/prot.10365 12833546
-
Schueler-Furman O Baker D Conserved residue clustering and protein structure prediction Proteins 2003, 52:225-235 10.1002/prot.10365 12833546
-
(2003)
Proteins
, vol.52
, pp. 225-235
-
-
Schueler-Furman, O.1
Baker, D.2
-
58
-
-
0026728019
-
Construction of dictionary of sequence motifs that characterize groups of related proteins
-
10.1093/protein/5.6.479 1438158
-
Ogiwara A Uchiyama I Yasuhiko S Kanehisa M Construction of dictionary of sequence motifs that characterize groups of related proteins Protein Eng 1992, 5:479-488 10.1093/protein/5.6.479 1438158
-
(1992)
Protein Eng
, vol.5
, pp. 479-488
-
-
Ogiwara, A.1
Uchiyama, I.2
Yasuhiko, S.3
Kanehisa, M.4
-
59
-
-
23144459084
-
SCANMOT: Searching for similar sequences using s simultaneous scan of multiple sequence motifs
-
33 Web Server 1160253 15980468 10.1093/nar/gki493
-
Chakrabarti S Anand AP Bhardwaj N Pugalenthi G Sowdhamini R SCANMOT: searching for similar sequences using s simultaneous scan of multiple sequence motifs Nucleic Acids Res 2005 33 Web Server W274-W276 1160253 15980468 10.1093/nar/gki493
-
(2005)
Nucleic Acids Res
-
-
Chakrabarti, S.1
Anand, A.P.2
Bhardwaj, N.3
Pugalenthi, G.4
Sowdhamini, R.5
-
61
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
146917 9254694 10.1093/nar/25.17.3389
-
Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res 1997, 25:3389-3402 146917 9254694 10.1093/nar/ 25.17.3389
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
62
-
-
13444273448
-
The universal protein resource (UniProt)
-
33 Database 540024 15608167
-
Bairoch A Apweiler R Wu CH Barker WC Boeckmann B Ferro S Gasteiger E Huang H Lopez R Magrane M Martin MJ Natale DA O'Donovan C Redaschi N Yeh LS The universal protein resource (UniProt) Nucl Acids Res 2005 33 Database D154-D159 540024 15608167
-
(2005)
Nucl Acids Res
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.15
-
65
-
-
84886755207
-
-
BLAST Database ftp://ftp.ncbi.nlm.nih.gov/blast/db/
-
BLAST Database
-
-
-
66
-
-
23144448512
-
ConSurf: Identification of functional regions in proteins by surface-mapping of phylogenetic information
-
33 Web Server 1160131 15980475 10.1093/nar/gki370
-
Landau M Mayrose I Rosenberg Y Glaser F Martz E Pupko T Ben-Tal N ConSurf: Identification of functional regions in proteins by surface-mapping of phylogenetic information Nucleic Acids Res 2005 33 Web Server W299-W302 1160131 15980475 10.1093/nar/gki370
-
(2005)
Nucleic Acids Res
-
-
Landau, M.1
Mayrose, I.2
Rosenberg, Y.3
Glaser, F.4
Martz, E.5
Pupko, T.6
Ben-Tal, N.7
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