메뉴 건너뛰기




Volumn 336, Issue 4, 2004, Pages 943-955

A Dissection of Specific and Non-specific Protein-Protein Interfaces

Author keywords

Crystal packing; Homodimers; Interface area; Protein protein interaction; Quaternary structure prediction

Indexed keywords

DIMER; MONOMER; PROTEIN SUBUNIT;

EID: 1042275583     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2003.12.073     Document Type: Article
Times cited : (417)

References (44)
  • 2
    • 0023193446 scopus 로고
    • The accessible surface area and stability of oligomeric proteins
    • Miller S., Lesk A.M., Janin J., Chothia C. The accessible surface area and stability of oligomeric proteins. Nature. 328:1987;834-836.
    • (1987) Nature , vol.328 , pp. 834-836
    • Miller, S.1    Lesk, A.M.2    Janin, J.3    Chothia, C.4
  • 3
    • 0024046505 scopus 로고
    • An investigation of protein subunits and domain interfaces
    • Argos P. An investigation of protein subunits and domain interfaces. Protein Eng. 2:1988;101-113.
    • (1988) Protein Eng. , vol.2 , pp. 101-113
    • Argos, P.1
  • 4
    • 0029109468 scopus 로고
    • Protein-protein interactions: A survey of protein dimer structures
    • Jones S., Thornton J.M. Protein-protein interactions: a survey of protein dimer structures. Prog. Biophys. Mol. Biol. 63:1995;31-65.
    • (1995) Prog. Biophys. Mol. Biol. , vol.63 , pp. 31-65
    • Jones, S.1    Thornton, J.M.2
  • 6
    • 0031565729 scopus 로고    scopus 로고
    • Analysis of protein-protein interaction sites using surface patches
    • Jones S., Thornton J.M. Analysis of protein-protein interaction sites using surface patches. J. Mol. Biol. 272:1997;121-132.
    • (1997) J. Mol. Biol. , vol.272 , pp. 121-132
    • Jones, S.1    Thornton, J.M.2
  • 7
    • 0002567565 scopus 로고    scopus 로고
    • Analysis and classification of protein-protein interactions from a structural perspective
    • C. Kleanthous. Oxford: Oxford University Press
    • Jones S., Thornton J.M. Analysis and classification of protein-protein interactions from a structural perspective. Kleanthous C. Protein-Protein Recognition. 2000;33-59 Oxford University Press, Oxford.
    • (2000) Protein-Protein Recognition , pp. 33-59
    • Jones, S.1    Thornton, J.M.2
  • 8
    • 0030602896 scopus 로고    scopus 로고
    • A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique
    • Tsai C.J., Lin S.L., Wolfson H.J., Nussinov R. A dataset of protein-protein interfaces generated with a sequence-order-independent comparison technique. J. Mol. Biol. 260:1996;604-620.
    • (1996) J. Mol. Biol. , vol.260 , pp. 604-620
    • Tsai, C.J.1    Lin, S.L.2    Wolfson, H.J.3    Nussinov, R.4
  • 9
    • 0034308172 scopus 로고    scopus 로고
    • Discriminating between homodimeric and monomeric proteins in the crystalline state
    • Ponstingl H., Henrick K., Thornton J.M. Discriminating between homodimeric and monomeric proteins in the crystalline state. Proteins: Struct. Funct. Genet. 41:2000;47-57.
    • (2000) Proteins: Struct. Funct. Genet. , vol.41 , pp. 47-57
    • Ponstingl, H.1    Henrick, K.2    Thornton, J.M.3
  • 10
    • 0032522670 scopus 로고    scopus 로고
    • Morphology of protein-protein interfaces
    • Larsen T.A., Olson A.J., Goodsell D.S. Morphology of protein-protein interfaces. Structure. 6:1998;421-427.
    • (1998) Structure , vol.6 , pp. 421-427
    • Larsen, T.A.1    Olson, A.J.2    Goodsell, D.S.3
  • 11
    • 0003187567 scopus 로고    scopus 로고
    • The atomic structure of protein-protein recognition sites
    • Lo Conte L., Chothia C., Janin J. The atomic structure of protein-protein recognition sites. J. Mol. Biol. 285:1999;2177-2198.
    • (1999) J. Mol. Biol. , vol.285 , pp. 2177-2198
    • Lo Conte, L.1    Chothia, C.2    Janin, J.3
  • 14
    • 0037229456 scopus 로고    scopus 로고
    • Analysing six types of protein-protein interfaces
    • Ofran Y., Rost B. Analysing six types of protein-protein interfaces. J. Mol. Biol. 325:2003;377-387.
    • (2003) J. Mol. Biol. , vol.325 , pp. 377-387
    • Ofran, Y.1    Rost, B.2
  • 15
    • 0242299207 scopus 로고    scopus 로고
    • Atomic contact vectors in protein-protein recognition
    • Mintseris J., Weng Z. Atomic contact vectors in protein-protein recognition. Proteins: Struct. Funct. Genet. 53:2003;629-639.
    • (2003) Proteins: Struct. Funct. Genet. , vol.53 , pp. 629-639
    • Mintseris, J.1    Weng, Z.2
  • 17
    • 0029586759 scopus 로고
    • Protein-protein interaction at crystal contacts
    • Janin J., Rodier F. Protein-protein interaction at crystal contacts. Proteins: Struct. Funct. Genet. 23:1995;580-587.
    • (1995) Proteins: Struct. Funct. Genet. , vol.23 , pp. 580-587
    • Janin, J.1    Rodier, F.2
  • 18
    • 0031297461 scopus 로고    scopus 로고
    • Specific vs non-specific contacts in protein crystals
    • Janin J. Specific vs non-specific contacts in protein crystals. Nature Struct. Biol. 4:1997;973-974.
    • (1997) Nature Struct. Biol. , vol.4 , pp. 973-974
    • Janin, J.1
  • 19
    • 0030850230 scopus 로고    scopus 로고
    • Protein-protein crystal-packing contacts
    • Carugo O., Argos P. Protein-protein crystal-packing contacts. Protein Sci. 6:1997;2261-2263.
    • (1997) Protein Sci. , vol.6 , pp. 2261-2263
    • Carugo, O.1    Argos, P.2
  • 20
    • 0030877077 scopus 로고    scopus 로고
    • Extent and nature of contacts between protein molecules in crystal lattices and between subunits of protein oligomers
    • Dasgupta S., Iyer G.H., Bryant S.H., Lawrence C.E., Bell J.A. Extent and nature of contacts between protein molecules in crystal lattices and between subunits of protein oligomers. Proteins: Struct. Funct. Genet. 28:1997;494-514.
    • (1997) Proteins: Struct. Funct. Genet. , vol.28 , pp. 494-514
    • Dasgupta, S.1    Iyer, G.H.2    Bryant, S.H.3    Lawrence, C.E.4    Bell, J.A.5
  • 21
    • 0032169688 scopus 로고    scopus 로고
    • PQS: A protein quaternary structure file server
    • Henrick K., Thornton J.M. PQS: a protein quaternary structure file server. Trends Biochem. Sci. 23:1998;358-361.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 358-361
    • Henrick, K.1    Thornton, J.M.2
  • 22
    • 0242338378 scopus 로고
    • An array processor program for computing the neighbours in molecular packing
    • Rodier F., Chiadmi M., Crosio M.P. An array processor program for computing the neighbours in molecular packing. Acta Crystallog. sect. A. 46:1990;37.
    • (1990) Acta Crystallog. Sect. a , vol.46 , pp. 37
    • Rodier, F.1    Chiadmi, M.2    Crosio, M.P.3
  • 23
  • 24
    • 0015222647 scopus 로고
    • The interpretation of protein structures: Estimation of static accessibility
    • Lee B., Richards F.M. The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 55:1971;379-400.
    • (1971) J. Mol. Biol. , vol.55 , pp. 379-400
    • Lee, B.1    Richards, F.M.2
  • 25
    • 0028332007 scopus 로고
    • A role for surface hydrophobicity in protein-protein recognition
    • Young L., Jernigan R.L., Covell D.G. A role for surface hydrophobicity in protein-protein recognition. Protein Sci. 3:1994;717-729.
    • (1994) Protein Sci. , vol.3 , pp. 717-729
    • Young, L.1    Jernigan, R.L.2    Covell, D.G.3
  • 26
    • 1842405464 scopus 로고    scopus 로고
    • Study of protein-protein interfaces: A statistical analysis of the hydrophobic effect
    • Tsai C.J., Lin S.L., Wolfson H.J., Nussinov R. Study of protein-protein interfaces: a statistical analysis of the hydrophobic effect. Protein Sci. 6:1997;53-64.
    • (1997) Protein Sci. , vol.6 , pp. 53-64
    • Tsai, C.J.1    Lin, S.L.2    Wolfson, H.J.3    Nussinov, R.4
  • 27
    • 0031450506 scopus 로고    scopus 로고
    • Hydrogen bonds and salt bridges across protein-protein interfaces
    • Xu D., Tsai C.J., Nussinov R. Hydrogen bonds and salt bridges across protein-protein interfaces. Protein Eng. 10:1997;999-1012.
    • (1997) Protein Eng. , vol.10 , pp. 999-1012
    • Xu, D.1    Tsai, C.J.2    Nussinov, R.3
  • 28
    • 0028304962 scopus 로고
    • Satisfying hydrogen bonding potential in proteins
    • McDonald I.K., Thornton J.M. Satisfying hydrogen bonding potential in proteins. J. Mol. Biol. 238:1994;777-793.
    • (1994) J. Mol. Biol. , vol.238 , pp. 777-793
    • McDonald, I.K.1    Thornton, J.M.2
  • 29
    • 0027772959 scopus 로고
    • Shape complementarity at protein/protein interfaces
    • Lawrence M.C., Colman P.M. Shape complementarity at protein/protein interfaces. J. Mol. Biol. 234:1993;946-950.
    • (1993) J. Mol. Biol. , vol.234 , pp. 946-950
    • Lawrence, M.C.1    Colman, P.M.2
  • 30
    • 0028881975 scopus 로고
    • SURFNET: A program for visualizing molecular surfaces, cavities, and intermolecular interactions
    • Laskowski R.A. SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions. J. Mol. Graph. 13:1995;323-330.
    • (1995) J. Mol. Graph. , vol.13 , pp. 323-330
    • Laskowski, R.A.1
  • 31
    • 0032515101 scopus 로고    scopus 로고
    • A soft mean-field potential derived from crystal contacts for predicting protein-protein interactions
    • Robert C.H., Janin J. A soft mean-field potential derived from crystal contacts for predicting protein-protein interactions. J. Mol. Biol. 283:1998;1037-1047.
    • (1998) J. Mol. Biol. , vol.283 , pp. 1037-1047
    • Robert, C.H.1    Janin, J.2
  • 33
    • 0026486538 scopus 로고
    • Crystal packing in six crystal forms of pancreatic ribonuclease
    • Crosio M.P., Janin J., Jullien J. Crystal packing in six crystal forms of pancreatic ribonuclease. J. Mol. Biol. 228:1992;243-251.
    • (1992) J. Mol. Biol. , vol.228 , pp. 243-251
    • Crosio, M.P.1    Janin, J.2    Jullien, J.3
  • 34
    • 0027146064 scopus 로고
    • The crystal structure of an engineered monomeric triosephosphate isomerase, monoTIM: The correct modelling of a eight-residue loop
    • Borchert T.V., Abagyan R., Kishan K.V.R., Zeelen J.P., Wierenga R.K. The crystal structure of an engineered monomeric triosephosphate isomerase, monoTIM: the correct modelling of a eight-residue loop. Structure. 1:1993;205-213.
    • (1993) Structure , vol.1 , pp. 205-213
    • Borchert, T.V.1    Abagyan, R.2    Kishan, K.V.R.3    Zeelen, J.P.4    Wierenga, R.K.5
  • 35
    • 0002370093 scopus 로고    scopus 로고
    • Kinetics and thermodynamics of protein-protein interactions
    • C. Kleanthous. Oxford: Oxford University Press
    • Janin J. Kinetics and thermodynamics of protein-protein interactions. Kleanthous C. Protein-Protein Recognition. 2000;1-32 Oxford University Press, Oxford.
    • (2000) Protein-Protein Recognition , pp. 1-32
    • Janin, J.1
  • 36
    • 0036424666 scopus 로고    scopus 로고
    • Structural basis for molecular recognition
    • Wodak S.J., Janin J. Structural basis for molecular recognition. Advan. Protein Chem. 61:2002;9-73.
    • (2002) Advan. Protein Chem. , vol.61 , pp. 9-73
    • Wodak, S.J.1    Janin, J.2
  • 37
    • 0041312697 scopus 로고    scopus 로고
    • Diversity of protein-protein interactions
    • Nooeen I.M.A., Thornton J.M. Diversity of protein-protein interactions. EMBO J. 22:2003;3482-3486.
    • (2003) EMBO J. , vol.22 , pp. 3482-3486
    • Nooeen, I.M.A.1    Thornton, J.M.2
  • 38
    • 0037474541 scopus 로고    scopus 로고
    • Structural characterisation and functional significance of transient protein-protein interactions
    • Nooeen I.M.A., Thornton J.M. Structural characterisation and functional significance of transient protein-protein interactions. J. Mol. Biol. 325:2003;991-1018.
    • (2003) J. Mol. Biol. , vol.325 , pp. 991-1018
    • Nooeen, I.M.A.1    Thornton, J.M.2
  • 39
    • 0002305987 scopus 로고    scopus 로고
    • Protein-protein complexes formed by electron transfer proteins
    • C. Kleanthous. Oxford: Oxford University Press
    • Mathews F.S., Mauk A.G., Moore G.R. Protein-protein complexes formed by electron transfer proteins. Kleanthous C. Protein-Protein Recognition. 2000;60-101 Oxford University Press, Oxford.
    • (2000) Protein-Protein Recognition , pp. 60-101
    • Mathews, F.S.1    Mauk, A.G.2    Moore, G.R.3
  • 40
  • 41
    • 0035914476 scopus 로고    scopus 로고
    • Conservation helps to identify biologically relevant crystal contacts
    • Valdar W.S.J., Thornton J.M. Conservation helps to identify biologically relevant crystal contacts. J. Mol. Biol. 313:2001;399-416.
    • (2001) J. Mol. Biol. , vol.313 , pp. 399-416
    • Valdar, W.S.J.1    Thornton, J.M.2
  • 42
    • 0035178383 scopus 로고    scopus 로고
    • Protein-protein interfaces: Analysis of aminoacid conservation in homodimers
    • Valdar W.S.J., Thornton J.M. Protein-protein interfaces: analysis of aminoacid conservation in homodimers. Proteins: Struct. Funct. Genet. 42:2001;108-124.
    • (2001) Proteins: Struct. Funct. Genet. , vol.42 , pp. 108-124
    • Valdar, W.S.J.1    Thornton, J.M.2
  • 43
    • 0036601150 scopus 로고    scopus 로고
    • Computational methods for the prediction of protein interactions
    • Valencia A., Pazos F. Computational methods for the prediction of protein interactions. Curr. Opin. Struct. Biol. 12:2002;368-373.
    • (2002) Curr. Opin. Struct. Biol. , vol.12 , pp. 368-373
    • Valencia, A.1    Pazos, F.2
  • 44
    • 0036468670 scopus 로고    scopus 로고
    • Evolutionary predictions of binding surfaces and interactions
    • Lichtarge O., Sowa M.E. Evolutionary predictions of binding surfaces and interactions. Curr. Opin. Struct. Biol. 12:2002;21-27.
    • (2002) Curr. Opin. Struct. Biol. , vol.12 , pp. 21-27
    • Lichtarge, O.1    Sowa, M.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.