A fast method to predict protein interaction sites from sequences

Journal of Molecular Biology

Volumn 302, Issue 4, 2000, Pages 917-926

  Gallet, Xavier ^a   Charloteaux, Benoit ^a   Thomas, Annick ^b   Brasseur, Robert ^a  

^a UNIVERSITY OF LIÈGE   (Belgium)

^b BICHAT HOSPITAL   (France)

Author keywords

Hydrophobic moment; Hydrophobicity; Interaction site; Receptor binding domain; Sequence

Indexed keywords

APOLIPOPROTEIN E; CALCIUM; DNA; GAG PROTEIN; PENICILLIN BINDING PROTEIN; VIRUS FUSION PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; DATA BASE; HYDROPHOBICITY; MUTATION; NEWCASTLE DISEASE PARAMYXOVIRUS; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DNA BINDING; PROTEIN INTERACTION; PROTEIN STRUCTURE; RECEPTOR BINDING; SEQUENCE ANALYSIS; STATISTICAL ANALYSIS; STRUCTURE ANALYSIS;

NEWCASTLE DISEASE VIRUS; PARAMYXOVIRIDAE;

EID: 0034730415     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.4092     Document Type: Article

References (35)

1. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
2. Modeling protein-ligand complexes
3. An analysis of conformational changes on protein-protein association: Implications for predictive docking
4. Differentiation of lipid-associating helices by use of three-dimensional molecular hydrophobicity potential calculations
5. Binding of a high reactive heparin to human apolipoprotein E: Identification of two heparin-binding domains
6. Identification of a cytoplasmic targeting/retention signal in a retroviral Gag poly-protein
7. The three-dimensional solution structure of the matrix protein from the type D retrovirus, the Mason-Pfizer monkey virus, and implications for the morphology of retroviral assembly
8. Use of hydrophobicity profiles to predict receptor binding domains on apolipoprotein E and the low density lipoprotein apolipoprotein B-E receptor
9. The helical hydrophobic moment: A measure of the amphiphilicity of a helix
10. Analysis of membrane and surface protein sequences with the hydrophobic moment plot
11. Multimodular penicillin-binding proteins: An enigmatic family of orthologs and paralogs
12. Protein-protein recognition
13. The structure of protein-protein recognition sites
14. Analysis of protein-protein interaction sites using surface patches
15. Prediction of protein-protein interaction sites using surface patches
16. A hypothetical structural role for proline residues in the flanking segments of protein-protein interaction sites
17. Prediction of potential protein-protein interaction sites from amino acid sequence. Identification of a fibrin polymerization site
18. Fusion (F) protein gene of New-castle disease virus: Sequence and hydrophobicity comparative analysis between virulent and avirulent strains
19. Plasma lipoproteins: Apolipoprotein structure and function
20. Detecting protein function and protein-protein interactions from genome sequences
21. Differential functionalities of amphiphilic peptide segments of the cell-septation penicillin-binding protein 3 of Escherichia coli
22. X-ray structure of Streptococcus pneumoniae PBP2X, a primary penicillin target enzyme
23. Structure of a DNA-bound ultrabithorax-extradenticle homeodomain complex
24. Correlated mutations contain information about protein-protein interaction
25. Protein-protein interactions: Methods for detection and analysis
26. WinMGM: A fast CPK molecular graphics program for analyzing molecular structure
27. A single amino acid substitution within the matrix protein of a type D retrovirus converts its morphogenesis to that of a type C retrovirus
28. Comparative protein modelling by saytisfaction spatial restraints
29. Predicting the structure of protein complexes: A step in the right direction
30. Predictive docking of protein-protein and protein-DNA complexes
31. Synthesis, assembly, and processing of viral proteins
32. Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions
33. Human apolipoprotein E. Determination of the heparin binding sites of apolipoprotein E3
34. A role for surface hydrophobicity in protein-protein recognition