-
1
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith,T.F. and Waterman,M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
2
-
-
0023989064
-
Abstract improved tools for biological sequence comparison
-
Pearson,W.R. and Lipman,D.J. (1988) Abstract improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schäffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: Anew generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
5
-
-
0029889221
-
Local alignment statistics
-
Altschul,S.F. and Gish,W. (1996) Local alignment statistics. Methods Enzymol., 266, 460-480.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 460-480
-
-
Altschul, S.F.1
Gish, W.2
-
6
-
-
0024597485
-
Approximate matching of regular expressions
-
Myers,E.W. and Miller,W. (1989) Approximate matching of regular expressions. Bull. Math. Biol., 51, 5-37.
-
(1989)
Bull. Math. Biol.
, vol.51
, pp. 5-37
-
-
Myers, E.W.1
Miller, W.2
-
7
-
-
0025141443
-
Automatic generation of primary sequence patterns from sets of related protein sequences
-
Smith,R.F. and Smith,T.F. (1990) Automatic generation of primary sequence patterns from sets of related protein sequences. Proc. Natl Acad. Sci. USA, 87, 118-122.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 118-122
-
-
Smith, R.F.1
Smith, T.F.2
-
8
-
-
0025265665
-
Searching for patterns in protein and nucleic acid sequences
-
Staden,R. (1990) Searching for patterns in protein and nucleic acid sequences. Methods Enzymol., 183, 193-211.
-
(1990)
Methods Enzymol.
, vol.183
, pp. 193-211
-
-
Staden, R.1
-
9
-
-
0027192852
-
A system for pattern matching applications on biosequences
-
Mehldau,G. and Myers,G. (1993) A system for pattern matching applications on biosequences. Comput. Appl. Biosci., 9, 299-314.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 299-314
-
-
Mehldau, G.1
Myers, G.2
-
10
-
-
0028129799
-
A simple tool to search for sequence motifs that are conserved in BLAST outputs
-
Tatusov,R.L. and Koonin,E.V. (1994) A simple tool to search for sequence motifs that are conserved in BLAST outputs. Comput. Appl. Biosci., 10, 457-459.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 457-459
-
-
Tatusov, R.L.1
Koonin, E.V.2
-
11
-
-
0029860342
-
Construction and analysis of a profile library characterizing groups of structurally known proteins
-
Ogiwara,A., Uchiyama,I., Takagi,T. and Kanehisa,M. (1996) Construction and analysis of a profile library characterizing groups of structurally known proteins. Protein Sci., 5, 1991-1999.
-
(1996)
Protein Sci.
, vol.5
, pp. 1991-1999
-
-
Ogiwara, A.1
Uchiyama, I.2
Takagi, T.3
Kanehisa, M.4
-
12
-
-
0030771126
-
The PROSITE database, its status in 1997
-
Bairoch,A., Bucher,P. and Hofmann,K. (1997) The PROSITE database, its status in 1997. Nucleic Acids Res., 25, 217-221.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 217-221
-
-
Bairoch, A.1
Bucher, P.2
Hofmann, K.3
-
13
-
-
0032169849
-
Protein sequence similarity searches using patterns as seeds
-
Zhang,Z., Schaffer,A.A., Miller,W., Madden,T.L., Lipman,D.J., Koonin,E.V. and Altschul,S.F. (1998) Protein sequence similarity searches using patterns as seeds. Nucleic Acids Res., 26, 3986-3990.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3986-3990
-
-
Zhang, Z.1
Schaffer, A.A.2
Miller, W.3
Madden, T.L.4
Lipman, D.J.5
Koonin, E.V.6
Altschul, S.F.7
-
14
-
-
0030965735
-
Score distributions for simultaneous matching to multiple motifs
-
Bailey,T.L. and Gribskov,M. (1997) Score distributions for simultaneous matching to multiple motifs. J Comput Biol., 4, 45-59.
-
(1997)
J Comput Biol.
, vol.4
, pp. 45-59
-
-
Bailey, T.L.1
Gribskov, M.2
-
15
-
-
0030853763
-
Meta-MEME: Motif-based hidden Markov models of biological sequences
-
Grundy,W.N., Bailey,T.L., Elkan,C.P. and Baker,M.E. (1997) Meta-MEME: motif-based hidden Markov models of biological sequences. Comput. Appl. Biosci., 13, 397-406.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 397-406
-
-
Grundy, W.N.1
Bailey, T.L.2
Elkan, C.P.3
Baker, M.E.4
-
16
-
-
13244268369
-
Improvement of alignment accuracy utilizing sequentially conserved motifs
-
Chakrabarti,S., Bhardwaj,N., Anand,P.A. and Sowdhamini,R. (2004) Improvement of alignment accuracy utilizing sequentially conserved motifs. BMC Bioinformatics., 5, 167-179.
-
(2004)
BMC Bioinformatics.
, vol.5
, pp. 167-179
-
-
Chakrabarti, S.1
Bhardwaj, N.2
Anand, P.A.3
Sowdhamini, R.4
-
17
-
-
0017751668
-
The Protein Data Bank. A computer-based archival file for macromolecular structures
-
Bernstein,F.C., Koetzle,T.F., Williams,G.J., Meyer,E.F.,Jr, Brice,M.D., Rodgers,J.R., Kennard,O., Shimanouchi,T. and Tasumi,M. (1977) The Protein Data Bank. A computer-based archival file for macromolecular structures. Eur. J. Biochem., 80, 319-324.
-
(1977)
Eur. J. Biochem.
, vol.80
, pp. 319-324
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer Jr., E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
18
-
-
0033954256
-
The Protein Data Bank
-
Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
19
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin,A.G., Brenner,S.E., Hubbard,T. and Chothia,C. (1995) SCOP: A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
20
-
-
0030624324
-
Protein sequence annotation in the genome era: The annotation concept of SWISS-PROT, TREMBL
-
21-25 June, Halkidiki, Greece. AAAI Press, Menlo Park
-
Apweiler,R., Gateau,A., Contrino,S., Martin,M.J., Junker,V., O'Donovan,C., Lang,F., Mitaritonna,N., Kappus,S. and Bairoch,A. (1997) Protein sequence annotation in the genome era: The annotation concept of SWISS-PROT, TREMBL. In Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology (ISMB-97), 21-25 June, Halkidiki, Greece. AAAI Press, Menlo Park, pp. 33-43.
-
(1997)
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology (ISMB-97)
, pp. 33-43
-
-
Apweiler, R.1
Gateau, A.2
Contrino, S.3
Martin, M.J.4
Junker, V.5
O'Donovan, C.6
Lang, F.7
Mitaritonna, N.8
Kappus, S.9
Bairoch, A.10
-
21
-
-
0345600220
-
SMoS: A database of structural motifs of protein superfamilies
-
Chakrabarti,S., Venkatramanan,K. and Sowdhamini,R. (2003) SMoS: A database of structural motifs of protein superfamilies. Protein Eng., 16, 791-793.
-
(2003)
Protein Eng.
, vol.16
, pp. 791-793
-
-
Chakrabarti, S.1
Venkatramanan, K.2
Sowdhamini, R.3
-
22
-
-
3042644660
-
Regions of minimal structural variation among members of protein domain superfamilies: Application to remote homology detection and modelling using distant relationships
-
Chakrabarti,S. and Sowdhamini,R. (2004) Regions of minimal structural variation among members of protein domain superfamilies: Application to remote homology detection and modelling using distant relationships. FEBS lett., 569, 31-36.
-
(2004)
FEBS Lett.
, vol.569
, pp. 31-36
-
-
Chakrabarti, S.1
Sowdhamini, R.2
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