메뉴 건너뛰기




Volumn 33, Issue SUPPL. 2, 2005, Pages

SCANMOT: Searching for similar sequences using a simultaneous scan of multiple sequence motifs

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID;

EID: 23144459084     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki493     Document Type: Article
Times cited : (10)

References (22)
  • 1
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith,T.F. and Waterman,M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 2
    • 0023989064 scopus 로고
    • Abstract improved tools for biological sequence comparison
    • Pearson,W.R. and Lipman,D.J. (1988) Abstract improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 5
    • 0029889221 scopus 로고    scopus 로고
    • Local alignment statistics
    • Altschul,S.F. and Gish,W. (1996) Local alignment statistics. Methods Enzymol., 266, 460-480.
    • (1996) Methods Enzymol. , vol.266 , pp. 460-480
    • Altschul, S.F.1    Gish, W.2
  • 6
    • 0024597485 scopus 로고
    • Approximate matching of regular expressions
    • Myers,E.W. and Miller,W. (1989) Approximate matching of regular expressions. Bull. Math. Biol., 51, 5-37.
    • (1989) Bull. Math. Biol. , vol.51 , pp. 5-37
    • Myers, E.W.1    Miller, W.2
  • 7
    • 0025141443 scopus 로고
    • Automatic generation of primary sequence patterns from sets of related protein sequences
    • Smith,R.F. and Smith,T.F. (1990) Automatic generation of primary sequence patterns from sets of related protein sequences. Proc. Natl Acad. Sci. USA, 87, 118-122.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 118-122
    • Smith, R.F.1    Smith, T.F.2
  • 8
    • 0025265665 scopus 로고
    • Searching for patterns in protein and nucleic acid sequences
    • Staden,R. (1990) Searching for patterns in protein and nucleic acid sequences. Methods Enzymol., 183, 193-211.
    • (1990) Methods Enzymol. , vol.183 , pp. 193-211
    • Staden, R.1
  • 9
    • 0027192852 scopus 로고
    • A system for pattern matching applications on biosequences
    • Mehldau,G. and Myers,G. (1993) A system for pattern matching applications on biosequences. Comput. Appl. Biosci., 9, 299-314.
    • (1993) Comput. Appl. Biosci. , vol.9 , pp. 299-314
    • Mehldau, G.1    Myers, G.2
  • 10
    • 0028129799 scopus 로고
    • A simple tool to search for sequence motifs that are conserved in BLAST outputs
    • Tatusov,R.L. and Koonin,E.V. (1994) A simple tool to search for sequence motifs that are conserved in BLAST outputs. Comput. Appl. Biosci., 10, 457-459.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 457-459
    • Tatusov, R.L.1    Koonin, E.V.2
  • 11
    • 0029860342 scopus 로고    scopus 로고
    • Construction and analysis of a profile library characterizing groups of structurally known proteins
    • Ogiwara,A., Uchiyama,I., Takagi,T. and Kanehisa,M. (1996) Construction and analysis of a profile library characterizing groups of structurally known proteins. Protein Sci., 5, 1991-1999.
    • (1996) Protein Sci. , vol.5 , pp. 1991-1999
    • Ogiwara, A.1    Uchiyama, I.2    Takagi, T.3    Kanehisa, M.4
  • 12
    • 0030771126 scopus 로고    scopus 로고
    • The PROSITE database, its status in 1997
    • Bairoch,A., Bucher,P. and Hofmann,K. (1997) The PROSITE database, its status in 1997. Nucleic Acids Res., 25, 217-221.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 217-221
    • Bairoch, A.1    Bucher, P.2    Hofmann, K.3
  • 14
    • 0030965735 scopus 로고    scopus 로고
    • Score distributions for simultaneous matching to multiple motifs
    • Bailey,T.L. and Gribskov,M. (1997) Score distributions for simultaneous matching to multiple motifs. J Comput Biol., 4, 45-59.
    • (1997) J Comput Biol. , vol.4 , pp. 45-59
    • Bailey, T.L.1    Gribskov, M.2
  • 15
    • 0030853763 scopus 로고    scopus 로고
    • Meta-MEME: Motif-based hidden Markov models of biological sequences
    • Grundy,W.N., Bailey,T.L., Elkan,C.P. and Baker,M.E. (1997) Meta-MEME: motif-based hidden Markov models of biological sequences. Comput. Appl. Biosci., 13, 397-406.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 397-406
    • Grundy, W.N.1    Bailey, T.L.2    Elkan, C.P.3    Baker, M.E.4
  • 16
    • 13244268369 scopus 로고    scopus 로고
    • Improvement of alignment accuracy utilizing sequentially conserved motifs
    • Chakrabarti,S., Bhardwaj,N., Anand,P.A. and Sowdhamini,R. (2004) Improvement of alignment accuracy utilizing sequentially conserved motifs. BMC Bioinformatics., 5, 167-179.
    • (2004) BMC Bioinformatics. , vol.5 , pp. 167-179
    • Chakrabarti, S.1    Bhardwaj, N.2    Anand, P.A.3    Sowdhamini, R.4
  • 19
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin,A.G., Brenner,S.E., Hubbard,T. and Chothia,C. (1995) SCOP: A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 21
    • 0345600220 scopus 로고    scopus 로고
    • SMoS: A database of structural motifs of protein superfamilies
    • Chakrabarti,S., Venkatramanan,K. and Sowdhamini,R. (2003) SMoS: A database of structural motifs of protein superfamilies. Protein Eng., 16, 791-793.
    • (2003) Protein Eng. , vol.16 , pp. 791-793
    • Chakrabarti, S.1    Venkatramanan, K.2    Sowdhamini, R.3
  • 22
    • 3042644660 scopus 로고    scopus 로고
    • Regions of minimal structural variation among members of protein domain superfamilies: Application to remote homology detection and modelling using distant relationships
    • Chakrabarti,S. and Sowdhamini,R. (2004) Regions of minimal structural variation among members of protein domain superfamilies: Application to remote homology detection and modelling using distant relationships. FEBS lett., 569, 31-36.
    • (2004) FEBS Lett. , vol.569 , pp. 31-36
    • Chakrabarti, S.1    Sowdhamini, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.