Characterization of the stacking interactions between DNA or RNA nucleobases and the aromatic amino acids

Chemical Physics Letters

Volumn 444, Issue 1-3, 2007, Pages 167-175

  Rutledge, Lesley R ^a   Campbell Verduyn, Lachlan S ^b   Wetmore, Stacey D ^a  

^a UNIVERSITY OF LETHBRIDGE   (Canada)

^b MOUNT ALLISON UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BIOACTIVITY; CARBOXYLIC ACIDS; DNA; POTENTIAL ENERGY; RNA;

NUCLEOBASES; STACKING ENERGY; STACKING INTERACTIONS;

AMINO ACIDS;

EID: 34547588625     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cplett.2007.06.090     Document Type: Article

References (35)

1. Müller-Dethlefs K., and Hobza P. Chem. Rev. 100 (2002) 143
2. Meyer E.A., Castellano R.K., and Diederich F. Angew. Chem., Int. Ed. 42 (2003) 1210
3. Voet D., and Voet J.G. Biochemistry. third ed. (2004), John Wiley and Sons, Inc., New York
4. Burley S.K., and Petsko G.A. Science 229 (1985) 23
5. Hobza P., and Šponer J. Chem. Rev. 99 (1999) 3247
6. Šponer J., Leszczynski J., and Hobza P. Biopolymers 61 (2002) 3
7. Hobza P. Annu. Rep. Prog. Chem., Sect. C 100 (2004) 3
8. Šponer J., Leszczynski J., and Hobza P. J. Phys. Chem. 100 (1996) 5590
9. Hobza P., and Šponer J. J. Am. Chem. Soc. 124 (2002) 11802
10. Jurecka P., and Hobza P. J. Am. Chem. Soc. 125 (2003) 15608
11. Matta C.F., Castillo N., and Boyd R.J. J. Phys. Chem. B 110 (2006) 563
12. Morozov A.V., Misura K.M.S., Tsemekhman K., and Baker D. J. Phys. Chem. B 108 (2004) 8489
13. Gervasio F.L., Procacci P., Cardini G., Guarna A., and Giolitti A. V. Schettino J. Phys. Chem. B 104 (2000) 1108
14. Gervasio F.L., Chelli R., Procacci P., and Schettino V. Proteins: Struct. Funct. Genet. 48 (2002) 11
15. Gervasio F.L., Chelli R., Procacci P., and Schettino V. Protein J. 48 (2002) 117
16. Brana M.F., Cacho M., Gradillas A., Pascual-Teresa B., and Ramos A. Curr. Pharm. Des. 7 (2001) 1745
17. Stivers J.T., and Jiang Y.L. Chem. Rev. 103 (2003) 2729
18. Berti P.J., and McCann J.A.B. Chem. Rev. 106 (2006) 506
19. Kim K., and Friesner R.A. J. Am. Chem. Soc. 119 (1997) 12952
20. Šponer J., and Hobza P. J. Phys. Chem. A 104 (2000) 4597
21. Alkorta I., and Elguero J. J. Phys. Chem. B 107 (2003) 5306
22. Rozas I., Alkora I., and Elguero J. J. Phys. Chem. B 108 (2004) 3335
23. Cheng A.C., and Frankel A.D. J. Am. Chem. Soc. 126 (2004) 434
24. Rozas I., Alkorta I., and Elguero J. J. Org. Biomol. Chem. 3 (2005) 366
25. Hunter K.C., Millen A.L., and Wetmore S.D. J. Phys. Chem. B 111 (2007) 1858
26. Cauët E., Rooman M., Wintjens R., Liévin J., and Biot C. J. Chem. Theory Comput. 1 (2005) 472
27. Rutledge L.R., Campbell-Verduyn L.S., Hunter K.C., and Wetmore S.D. J. Phys. Chem. B 110 (2006) 19652
28. Sinnikrot M.O., and Sherrill C.D. J. Phys. Chem. A 110 (2006) 10656
29. Frisch M.J., et al. Gaussian 03, Revision D.01 (2004), Gaussian Inc, Wallingford, CT
30. Hobza P., Šponer J., and Leszczynski J. J. Phys. Chem. B 101 (1997) 8038
31. Rutledge L.R., Wheaton C.A., and Wetmore S.D. Phys. Chem. Chem. Phys. 9 (2007) 497
32. Alagona G., Ghio C., and Monti S. J. Phys. Chem. A 102 (1998) 6152
33. Gervasio F.L., Chelli R., Procacci P., and Schettino V. J. Phys. Chem. A 106 (2002) 2945
34. Wheaton C.A., Dobrowolski S.L., Millen A.L., and Wetmore S.D. Chem. Phys. Lett. 428 (2006) 157
35. McConnell T.L., and Wetmore S.D. J. Phys. Chem. B 111 (2007) 2999