메뉴 건너뛰기




Volumn 46, Issue 23, 2007, Pages 6944-6956

Unusually strong binding to the DNA minor groove by a highly twisted benzimidazole diphenylether: Induced fit and bound water

Author keywords

[No Author keywords available]

Indexed keywords

BENZIMIDAZOLE DIPHENYLETHER; COMPOUND-DNA INTERFACE; DIAMIDINE;

EID: 34250156358     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi700288g     Document Type: Article
Times cited : (25)

References (61)
  • 1
    • 0038268392 scopus 로고    scopus 로고
    • Dicationic DNA minor-groove binders as antimicrobial agents
    • Demeunynck, M, Bailly, C, and Wilson, W. D, Eds, pp, Wiley-VCH, Weinheim, Germany
    • Tidwell, R. R., and Boykin, D. W. (2003) Dicationic DNA minor-groove binders as antimicrobial agents, in DNA and RNA Binders: From Small Molecules to Drugs (Demeunynck, M., Bailly, C., and Wilson, W. D., Eds.) pp 414-460. Wiley-VCH, Weinheim, Germany.
    • (2003) DNA and RNA Binders: From Small Molecules to Drugs , pp. 414-460
    • Tidwell, R.R.1    Boykin, D.W.2
  • 2
    • 33744486606 scopus 로고    scopus 로고
    • Accumulation and intracellular distribution of antitrypanosomal diamidine compounds DB75 and DB820 in African trypanosomes
    • Mathis, A. M., Holman, J. L., Sturk, L. M., Ismail, M. A., Boykin, D. W., Tidwell, R. R., and Hall, J. E. (2006) Accumulation and intracellular distribution of antitrypanosomal diamidine compounds DB75 and DB820 in African trypanosomes, Antimicrob. Agents Chemother. 50, 2185-2191.
    • (2006) Antimicrob. Agents Chemother , vol.50 , pp. 2185-2191
    • Mathis, A.M.1    Holman, J.L.2    Sturk, L.M.3    Ismail, M.A.4    Boykin, D.W.5    Tidwell, R.R.6    Hall, J.E.7
  • 3
    • 22144474782 scopus 로고    scopus 로고
    • Dications that target the DNA minor groove: Compound design and preparation. DNA interactions, cellular distribution and biological activity
    • Wilson, W. D., Nguyen, B., Tanious, F. A., Mathis, A., Hall, J. E., Stephens, C. E., and Boykin, D. W. (2005) Dications that target the DNA minor groove: Compound design and preparation. DNA interactions, cellular distribution and biological activity, Curr. Med. Chem. Anti-Cancer Agents 5, 389-408.
    • (2005) Curr. Med. Chem. Anti-Cancer Agents , vol.5 , pp. 389-408
    • Wilson, W.D.1    Nguyen, B.2    Tanious, F.A.3    Mathis, A.4    Hall, J.E.5    Stephens, C.E.6    Boykin, D.W.7
  • 4
    • 0034951136 scopus 로고    scopus 로고
    • DNA minor-groove recognition by small molecules
    • Neidle, S. (2001) DNA minor-groove recognition by small molecules, Nat. Prod. Rep. 18, 291-309.
    • (2001) Nat. Prod. Rep , vol.18 , pp. 291-309
    • Neidle, S.1
  • 5
    • 0037832279 scopus 로고    scopus 로고
    • Recognition of the DNA minor groove by pynole-imidazole polyamides
    • Dervan, P. B., and Edelson, B. S. (2003) Recognition of the DNA minor groove by pynole-imidazole polyamides, Curr. Opin. Struct. Biol. 13, 284-299.
    • (2003) Curr. Opin. Struct. Biol , vol.13 , pp. 284-299
    • Dervan, P.B.1    Edelson, B.S.2
  • 6
    • 0345669344 scopus 로고    scopus 로고
    • Polyamide Dimer Stacking in the DNA Minor Groove and Recognition of T·G Mismatched Base Pairs in DNA
    • Demeunynck, M, Bailly, C, and Wilson, W. D, Eds, pp, Wiley-VCH, Weinheim, Germany
    • Lacy, E. R., Madsen, E. M., Lee, M., and Wilson, W. D. (2003) Polyamide Dimer Stacking in the DNA Minor Groove and Recognition of T·G Mismatched Base Pairs in DNA, in DNA and RNA Binders: From Small Molecules to Drugs (Demeunynck, M., Bailly, C., and Wilson, W. D., Eds.) pp 384-413, Wiley-VCH, Weinheim, Germany.
    • (2003) DNA and RNA Binders: From Small Molecules to Drugs , pp. 384-413
    • Lacy, E.R.1    Madsen, E.M.2    Lee, M.3    Wilson, W.D.4
  • 7
    • 0025021003 scopus 로고
    • Selective cleavage of kinetoplast DNA minicircles promoted by antitrypanosomal drugs
    • Shapiro, T. A., and Englund, P. T. (1990) Selective cleavage of kinetoplast DNA minicircles promoted by antitrypanosomal drugs, Proc. Natl. Acad. Sci. U.S.A. 87, 950-954.
    • (1990) Proc. Natl. Acad. Sci. U.S.A , vol.87 , pp. 950-954
    • Shapiro, T.A.1    Englund, P.T.2
  • 8
    • 0037130293 scopus 로고    scopus 로고
    • Targeting critical regions in genomic DNA with AT-specific anticancer drugs
    • Woynarowski, J. M. (2002) Targeting critical regions in genomic DNA with AT-specific anticancer drugs, Biochim. Biophys. Acta 1587, 300-308.
    • (2002) Biochim. Biophys. Acta , vol.1587 , pp. 300-308
    • Woynarowski, J.M.1
  • 10
    • 22844442812 scopus 로고    scopus 로고
    • A host-guest approach for determining drug-DNA interactions: An example using netropsin
    • Goodwin, K. D., Long, E. C. and Georgiadis, M. M. (2005) A host-guest approach for determining drug-DNA interactions: An example using netropsin, Nucleic Acids Res. 33, 4106-4116.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4106-4116
    • Goodwin, K.D.1    Long, E.C.2    Georgiadis, M.M.3
  • 11
    • 0032189085 scopus 로고    scopus 로고
    • The use of diaminopurine to investigate structural properties of nucleic acids and molecular recognition between ligands and DNA
    • Bailly, C., and Waring, M. J. (1998) The use of diaminopurine to investigate structural properties of nucleic acids and molecular recognition between ligands and DNA, Nucleic Acids Res. 26, 4309-4314.
    • (1998) Nucleic Acids Res , vol.26 , pp. 4309-4314
    • Bailly, C.1    Waring, M.J.2
  • 12
    • 9444252283 scopus 로고    scopus 로고
    • DNA-templated assembly of helical cyanine dye aggregates: A supramolecular chain polymerization
    • Hannah, K. C., and Armitage, B. A. (2004) DNA-templated assembly of helical cyanine dye aggregates: A supramolecular chain polymerization, Acc. Chem. Res. 37, 845-853.
    • (2004) Acc. Chem. Res , vol.37 , pp. 845-853
    • Hannah, K.C.1    Armitage, B.A.2
  • 13
    • 0033887479 scopus 로고    scopus 로고
    • Designed sequence-specific minor groove ligands
    • Wemmer, D. E. (2000) Designed sequence-specific minor groove ligands, Annu. Rev. Biophys. Biomol. Struct. 29, 439-461.
    • (2000) Annu. Rev. Biophys. Biomol. Struct , vol.29 , pp. 439-461
    • Wemmer, D.E.1
  • 14
    • 0037508509 scopus 로고    scopus 로고
    • Sequence-selective targeting of long stretches of the DNA minor groove by a novel dimeric bis-benzimidazole
    • Joubert, A., Sun, X. W., Johansson, E., Bailly, C., Mann, J., and Neidle, S. (2003) Sequence-selective targeting of long stretches of the DNA minor groove by a novel dimeric bis-benzimidazole, Biochemists 42, 5984-5992.
    • (2003) Biochemists , vol.42 , pp. 5984-5992
    • Joubert, A.1    Sun, X.W.2    Johansson, E.3    Bailly, C.4    Mann, J.5    Neidle, S.6
  • 15
    • 0028844115 scopus 로고
    • The structure and replication of kinetoplast DNA
    • Shapiro, T. A., and Englund, P. T. (1995) The structure and replication of kinetoplast DNA, Annu. Rev. Microbiol. 49, 117-143.
    • (1995) Annu. Rev. Microbiol , vol.49 , pp. 117-143
    • Shapiro, T.A.1    Englund, P.T.2
  • 16
    • 0027253921 scopus 로고
    • Structure, DNA minor groove binding, and base pair specificity of alkyl- and aryl-linked bis(amidinobenzimidazoles) and bis(amidinoindoles)
    • Fairley, T. A., Tidwell, R. R., Donkor, I., Naiman, N. A., Ohemeng, K. A., Lombardy, R. J., Bentley, J. A., and Cory, M. (1993) Structure, DNA minor groove binding, and base pair specificity of alkyl- and aryl-linked bis(amidinobenzimidazoles) and bis(amidinoindoles), J. Med. Chem. 36, 1746-1753.
    • (1993) J. Med. Chem , vol.36 , pp. 1746-1753
    • Fairley, T.A.1    Tidwell, R.R.2    Donkor, I.3    Naiman, N.A.4    Ohemeng, K.A.5    Lombardy, R.J.6    Bentley, J.A.7    Cory, M.8
  • 17
    • 34250168299 scopus 로고    scopus 로고
    • DNA Minor Groove Interactions of Antiparasitic Diamidines: Reevaluation of The Crescent-Shape Concept in Groove-Binding
    • Lee, M, and Strekowski, L. Eds, Research Signpost
    • Nguyen, B., Boykin, D. W., and Wilson, W. D. (2007) DNA Minor Groove Interactions of Antiparasitic Diamidines: Reevaluation of The Crescent-Shape Concept in Groove-Binding, in Synthetic and Biophysical Studies of DNA Binding Compounds (Lee, M., and Strekowski, L. Eds.) Research Signpost.
    • (2007) Synthetic and Biophysical Studies of DNA Binding Compounds
    • Nguyen, B.1    Boykin, D.W.2    Wilson, W.D.3
  • 18
    • 0035393302 scopus 로고    scopus 로고
    • Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level
    • Luscombe, N. M., Laskowski, R. A., and Thornton, J. M. (2001) Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level, Nucleic Acids Res. 29, 2860-2874.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2860-2874
    • Luscombe, N.M.1    Laskowski, R.A.2    Thornton, J.M.3
  • 19
    • 1042298819 scopus 로고    scopus 로고
    • Heat capacity effects of water molecules and ions at a protein-DNA interface
    • Bergqvist, S., Williams, M. A., O'Brien, R., and Ladbury, J. E. (2004) Heat capacity effects of water molecules and ions at a protein-DNA interface, J. Mol. Biol. 336, 829-842.
    • (2004) J. Mol. Biol , vol.336 , pp. 829-842
    • Bergqvist, S.1    Williams, M.A.2    O'Brien, R.3    Ladbury, J.E.4
  • 20
  • 21
    • 33644980902 scopus 로고    scopus 로고
    • 3D QSAR on a library of heterocyclic diamidine derivatives with antiparasitic activity
    • Athri, P., Wenzler, T., Ruiz, P., Brum R., Boykin, D. W., Tidwell, R., and Wilson, W. D. (2006) 3D QSAR on a library of heterocyclic diamidine derivatives with antiparasitic activity, Bioorg. Med. Chem. 14, 3144-3152.
    • (2006) Bioorg. Med. Chem , vol.14 , pp. 3144-3152
    • Athri, P.1    Wenzler, T.2    Ruiz, P.3    Brum, R.4    Boykin, D.W.5    Tidwell, R.6    Wilson, W.D.7
  • 22
    • 33645768556 scopus 로고    scopus 로고
    • Binding-linked protonation of a DNA minor-groove agent
    • Nguyen, B., Stanek, J., and Wilson, W. D. (2006) Binding-linked protonation of a DNA minor-groove agent, Biophys. J. 90, 1319-1328.
    • (2006) Biophys. J , vol.90 , pp. 1319-1328
    • Nguyen, B.1    Stanek, J.2    Wilson, W.D.3
  • 23
    • 0037145991 scopus 로고    scopus 로고
    • Strong binding in the DNA minor groove by an aromatic diamidine with a shape that does not match the curvature of the groove
    • Nguyen, B., Lee, M. P., Hamelberg, D., Joubert, A., Bailly, C., Brun, R., Neidle, S., and Wilson, W. D. (2002) Strong binding in the DNA minor groove by an aromatic diamidine with a shape that does not match the curvature of the groove, J. Am. Chem. Soc. 124, 13680-13681.
    • (2002) J. Am. Chem. Soc , vol.124 , pp. 13680-13681
    • Nguyen, B.1    Lee, M.P.2    Hamelberg, D.3    Joubert, A.4    Bailly, C.5    Brun, R.6    Neidle, S.7    Wilson, W.D.8
  • 25
    • 27744550401 scopus 로고    scopus 로고
    • Out-of-shape DNA minor groove binders: Induced fit interactions of heterocyclic dications with the DNA minor groove
    • Miao, Y., Lee, M. P., Parkinson, G. N., Batista-Pana, A., Ismail, M. A., Neidle, S., Boykin, D. W., and Wilson, W. D. (2005) Out-of-shape DNA minor groove binders: Induced fit interactions of heterocyclic dications with the DNA minor groove, Biochemistry 44, 14701-14708.
    • (2005) Biochemistry , vol.44 , pp. 14701-14708
    • Miao, Y.1    Lee, M.P.2    Parkinson, G.N.3    Batista-Pana, A.4    Ismail, M.A.5    Neidle, S.6    Boykin, D.W.7    Wilson, W.D.8
  • 26
    • 0347720652 scopus 로고    scopus 로고
    • DNA sequence dependent monomer-dimer binding modulation of asymmetric benzimidazole derivatives
    • Tanious, F. A., Hamelberg, D., Bailly, C., Czarny, A., Boykin, D. W., and Wilson, W. D. (2004) DNA sequence dependent monomer-dimer binding modulation of asymmetric benzimidazole derivatives, J. Am. Chem. Soc. 126, 143-153.
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 143-153
    • Tanious, F.A.1    Hamelberg, D.2    Bailly, C.3    Czarny, A.4    Boykin, D.W.5    Wilson, W.D.6
  • 28
    • 0036180507 scopus 로고    scopus 로고
    • Recognition in the minor groove of double-stranded DNA by microgonotropens
    • Satz, A. L., and Bruice, T. C. (2002) Recognition in the minor groove of double-stranded DNA by microgonotropens, Acc. Chem. Res. 35, 86-95.
    • (2002) Acc. Chem. Res , vol.35 , pp. 86-95
    • Satz, A.L.1    Bruice, T.C.2
  • 29
    • 0036647051 scopus 로고    scopus 로고
    • Thermodynamics of drug-DNA interactions
    • Haq, I. (2002) Thermodynamics of drug-DNA interactions, Arch. Biochem. Biophys. 403, 1-15.
    • (2002) Arch. Biochem. Biophys , vol.403 , pp. 1-15
    • Haq, I.1
  • 30
    • 33745422093 scopus 로고    scopus 로고
    • A high-throughput, high-resolution strategy for the study of site-selective DNA binding agents: Analysis of a "highly twisted" benzimidazole-diamidine
    • Goodwin, K. D., Lewis, M. A., Tanious, F. A., Tidwell, R. R., Wilson, W. D., Georgiadis, M. M., and Long, E. C. (2006) A high-throughput, high-resolution strategy for the study of site-selective DNA binding agents: Analysis of a "highly twisted" benzimidazole-diamidine, J. Am. Chem. Soc. 128, 7846-7854.
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 7846-7854
    • Goodwin, K.D.1    Lewis, M.A.2    Tanious, F.A.3    Tidwell, R.R.4    Wilson, W.D.5    Georgiadis, M.M.6    Long, E.C.7
  • 31
    • 0017872205 scopus 로고
    • Diarylamidine derivatives with one or both of the aryl moieties consisting of an indole or indole-like ring. Inhibitors of arginine-specific esteroproteases
    • Tidwell, R. R., Geratz, J. D., Dann, O., Volz, G., Zeh, D., and Loewe, H. (1978) Diarylamidine derivatives with one or both of the aryl moieties consisting of an indole or indole-like ring. Inhibitors of arginine-specific esteroproteases, J. Med. Chem. 21, 613-623.
    • (1978) J. Med. Chem , vol.21 , pp. 613-623
    • Tidwell, R.R.1    Geratz, J.D.2    Dann, O.3    Volz, G.4    Zeh, D.5    Loewe, H.6
  • 32
    • 0028899328 scopus 로고
    • Comparison of different footprinting methodologies for detecting binding sites for a small ligand on DNA
    • Bailly, C., and Waring, M. J. (1995) Comparison of different footprinting methodologies for detecting binding sites for a small ligand on DNA, J. Biomol. Struct. Dyn. 12, 869-898.
    • (1995) J. Biomol. Struct. Dyn , vol.12 , pp. 869-898
    • Bailly, C.1    Waring, M.J.2
  • 33
    • 1642576322 scopus 로고    scopus 로고
    • A fluorescent intercalator displacement assay for establishing DNA binding selectivity and affinity
    • Tse, W. C. and Boger, D. L. (2004) A fluorescent intercalator displacement assay for establishing DNA binding selectivity and affinity, Acc. Chem. Res. 37, 61-69.
    • (2004) Acc. Chem. Res , vol.37 , pp. 61-69
    • Tse, W.C.1    Boger, D.L.2
  • 34
    • 0034833710 scopus 로고    scopus 로고
    • A simple, high-resolution method for establishing DNA binding affinity and sequence selectivity
    • Boger, D. L., Fink, B. E., Brunette, S. R., Tse, W. C., and Hedrick, M. P. (2001) A simple, high-resolution method for establishing DNA binding affinity and sequence selectivity, J. Am. Chem. Soc. 123, 5878-5891.
    • (2001) J. Am. Chem. Soc , vol.123 , pp. 5878-5891
    • Boger, D.L.1    Fink, B.E.2    Brunette, S.R.3    Tse, W.C.4    Hedrick, M.P.5
  • 35
    • 0015222647 scopus 로고
    • The interpretation of protein structures: Estimation of static accessibility
    • Lee, B., and Richards, F. M. (1971) The interpretation of protein structures: Estimation of static accessibility, J. Mol. Biol. 55, 379-400.
    • (1971) J. Mol. Biol , vol.55 , pp. 379-400
    • Lee, B.1    Richards, F.M.2
  • 36
    • 0004014257 scopus 로고
    • Department of Biochemistry and Molecular Biology, University College London, London
    • Hubbard, S. J., and Thornton, J. M. (1993) NACCESS, Department of Biochemistry and Molecular Biology, University College London, London.
    • (1993) NACCESS
    • Hubbard, S.J.1    Thornton, J.M.2
  • 37
    • 0031848098 scopus 로고    scopus 로고
    • Extending the range of rate constants available from BIACORE: Interpreting mass transport-influenced binding data
    • Myszka, D. G., He, X., Dembo, M., Morton, T. A., and Goldstein, B. (1998) Extending the range of rate constants available from BIACORE: Interpreting mass transport-influenced binding data, Biophys. J. 75, 583-594.
    • (1998) Biophys. J , vol.75 , pp. 583-594
    • Myszka, D.G.1    He, X.2    Dembo, M.3    Morton, T.A.4    Goldstein, B.5
  • 38
    • 0032702275 scopus 로고    scopus 로고
    • Affinity analysis of non-steady-state data obtained under mass transport limited conditions using BIAcore technology
    • Karlsson, R. (1999) Affinity analysis of non-steady-state data obtained under mass transport limited conditions using BIAcore technology, J. Mol. Recognit. 12, 285-292.
    • (1999) J. Mol. Recognit , vol.12 , pp. 285-292
    • Karlsson, R.1
  • 39
    • 33645864966 scopus 로고    scopus 로고
    • Fluorescent intercalator displacement analyses of DNA binding by the peptide-derived natural products netropsin, actinomycin, and bleomycin
    • Lewis, M. A., and Long, E. C. (2006) Fluorescent intercalator displacement analyses of DNA binding by the peptide-derived natural products netropsin, actinomycin, and bleomycin, Bioorg. Med. Chem. 14, 3481-3490.
    • (2006) Bioorg. Med. Chem , vol.14 , pp. 3481-3490
    • Lewis, M.A.1    Long, E.C.2
  • 41
    • 0026926970 scopus 로고
    • The CD of ligand-DNA systems. 2. Poly(dA-dT) B-DNA
    • Lyng, R., Rodger, A., and Norden, B. (1992) The CD of ligand-DNA systems. 2. Poly(dA-dT) B-DNA, Biopolymers 32, 1201-1214.
    • (1992) Biopolymers , vol.32 , pp. 1201-1214
    • Lyng, R.1    Rodger, A.2    Norden, B.3
  • 42
    • 0031308166 scopus 로고    scopus 로고
    • Evaluation of drug-nucleic acid interactions by thermal melting curves
    • Wilson, W. D., Tanious, F. A., Fernandez-Saiz, M., and Rigl, C. T. (1997) Evaluation of drug-nucleic acid interactions by thermal melting curves, Methods Mol. Biol. 90, 219-240.
    • (1997) Methods Mol. Biol , vol.90 , pp. 219-240
    • Wilson, W.D.1    Tanious, F.A.2    Fernandez-Saiz, M.3    Rigl, C.T.4
  • 44
    • 0036228119 scopus 로고    scopus 로고
    • Direct comparison of binding equilibrium, thermodynamic, and rate constants determined by surface- and solution-based biophysical methods
    • Day, Y. S., Baird, C. L., Rich, R. L., and Myszka, D. G. (2002) Direct comparison of binding equilibrium, thermodynamic, and rate constants determined by surface- and solution-based biophysical methods, Protein Sci. 11, 1017-1025.
    • (2002) Protein Sci , vol.11 , pp. 1017-1025
    • Day, Y.S.1    Baird, C.L.2    Rich, R.L.3    Myszka, D.G.4
  • 45
    • 0037308418 scopus 로고    scopus 로고
    • Characterizing a drug's primary binding site on albumin
    • Day, Y. S., and Myszka, D. G. (2003) Characterizing a drug's primary binding site on albumin, J. Pharm. Sci. 92, 333-343.
    • (2003) J. Pharm. Sci , vol.92 , pp. 333-343
    • Day, Y.S.1    Myszka, D.G.2
  • 46
    • 1842787056 scopus 로고    scopus 로고
    • Characterizing high-affinity antigen/antibody complexes by kinetic- and equilibrium-based methods
    • Drake, A. W., Myszka, D. G., and Klakamp, S. L. (2004) Characterizing high-affinity antigen/antibody complexes by kinetic- and equilibrium-based methods, Anal. Biochem. 328, 35-43.
    • (2004) Anal. Biochem , vol.328 , pp. 35-43
    • Drake, A.W.1    Myszka, D.G.2    Klakamp, S.L.3
  • 47
    • 1642413593 scopus 로고    scopus 로고
    • Affinity measurement using surface plasmon resonance
    • Karlsson, R., and Larsson, A. (2004) Affinity measurement using surface plasmon resonance, Methods Mol. Biol. 248, 389-415.
    • (2004) Methods Mol. Biol , vol.248 , pp. 389-415
    • Karlsson, R.1    Larsson, A.2
  • 49
    • 0024356301 scopus 로고
    • Rapid measurement of binding constants and heats of binding using a new titration calorimeter
    • Wiseman, T., Williston, S., Brandts, J. F., and Lin, L. N. (1989) Rapid measurement of binding constants and heats of binding using a new titration calorimeter, Anal. Biochem. 179, 131-137.
    • (1989) Anal. Biochem , vol.179 , pp. 131-137
    • Wiseman, T.1    Williston, S.2    Brandts, J.F.3    Lin, L.N.4
  • 50
    • 0036295082 scopus 로고    scopus 로고
    • Comparative thermodynamics for monomer and dimer sequence-dependent binding of a heterocyclic dication in the DNA minor groove
    • Wang, L., Kumar, A., Boykin, D. W., Bailly, C., and Wilson, W. D. (2002) Comparative thermodynamics for monomer and dimer sequence-dependent binding of a heterocyclic dication in the DNA minor groove, J. Mol. Biol. 317, 361-374.
    • (2002) J. Mol. Biol , vol.317 , pp. 361-374
    • Wang, L.1    Kumar, A.2    Boykin, D.W.3    Bailly, C.4    Wilson, W.D.5
  • 51
    • 0026684671 scopus 로고
    • Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water
    • Spolar, R. S., Livingstone, J. R., and Record, M. T., Jr. (1992) Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water, Biochemists 31, 3947-3955.
    • (1992) Biochemists , vol.31 , pp. 3947-3955
    • Spolar, R.S.1    Livingstone, J.R.2    Record Jr., M.T.3
  • 52
    • 0034713855 scopus 로고    scopus 로고
    • Energetics of DNA intercalation reactions
    • Ren, J., Jenkins, T. C., and Chaires, J. B. (2000) Energetics of DNA intercalation reactions, Biochemistry 39, 8439-8447.
    • (2000) Biochemistry , vol.39 , pp. 8439-8447
    • Ren, J.1    Jenkins, T.C.2    Chaires, J.B.3
  • 54
    • 0026447731 scopus 로고
    • X-ray structure of the DNase 1-d(GGTATACC): Complex at 2.3 Å resolution
    • Weston, S. A., Lahm, A., and Suck, D. (1992) X-ray structure of the DNase 1-d(GGTATACC): complex at 2.3 Å resolution, J. Mol. Biol. 226, 1237-1256.
    • (1992) J. Mol. Biol , vol.226 , pp. 1237-1256
    • Weston, S.A.1    Lahm, A.2    Suck, D.3
  • 55
    • 0029059536 scopus 로고
    • DNA sequence preferences of several AT-selective minor groove binding ligands
    • Abu-Daya, A., Brown, P. M., and Fox, K. R. (1995) DNA sequence preferences of several AT-selective minor groove binding ligands, Nucleic Acids Res. 23, 3385-3392.
    • (1995) Nucleic Acids Res , vol.23 , pp. 3385-3392
    • Abu-Daya, A.1    Brown, P.M.2    Fox, K.R.3
  • 56
    • 0031574354 scopus 로고    scopus 로고
    • Interaction of minor groove binding ligands with long AT tracts
    • Abu-Daya, A., and Fox, K. R. (1997) Interaction of minor groove binding ligands with long AT tracts, Nucleic Acids Res. 25, 4962-4969.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4962-4969
    • Abu-Daya, A.1    Fox, K.R.2
  • 57
    • 0032818316 scopus 로고    scopus 로고
    • DNA sequence recognition by a novel series of minor groove-binding ligands
    • Fox, K. R., Yan, Y., and Gong, B. (1999) DNA sequence recognition by a novel series of minor groove-binding ligands, Anticancer Drug Des. 14, 219-230.
    • (1999) Anticancer Drug Des , vol.14 , pp. 219-230
    • Fox, K.R.1    Yan, Y.2    Gong, B.3
  • 58
    • 0037092016 scopus 로고    scopus 로고
    • Influence of compound structure on affinity, sequence selectivity, and mode of binding to DNA for unfused aromatic dications related to furamidine
    • Nguyen, B., Tardy, C., Bailly, C., Colson, P., Houssier, C., Kumar, A., Boykin, D. W., and Wilson, W. D. (2002) Influence of compound structure on affinity, sequence selectivity, and mode of binding to DNA for unfused aromatic dications related to furamidine, Biopolymers 63, 281-297.
    • (2002) Biopolymers , vol.63 , pp. 281-297
    • Nguyen, B.1    Tardy, C.2    Bailly, C.3    Colson, P.4    Houssier, C.5    Kumar, A.6    Boykin, D.W.7    Wilson, W.D.8
  • 59
    • 0035965868 scopus 로고    scopus 로고
    • Heat does not come in different colours: Entropy-enthalpy compensation, free energy windows, quantum confinement, pressure perturbation calorimetry, solvation and the multiple causes of heat capacity effects in biomolecular interactions
    • Cooper, A., Johnson, C. M., Lakey, J. H., and Nollmann, M. (2001) Heat does not come in different colours: Entropy-enthalpy compensation, free energy windows, quantum confinement, pressure perturbation calorimetry, solvation and the multiple causes of heat capacity effects in biomolecular interactions, Biophys. Chem. 93, 215-230.
    • (2001) Biophys. Chem , vol.93 , pp. 215-230
    • Cooper, A.1    Johnson, C.M.2    Lakey, J.H.3    Nollmann, M.4
  • 60
    • 14744268745 scopus 로고    scopus 로고
    • Heat capacity effects in protein folding and ligand binding: A re-evaluation of the role of water in biomolecular thermodynamics
    • Cooper, A. (2005) Heat capacity effects in protein folding and ligand binding: A re-evaluation of the role of water in biomolecular thermodynamics, Biophys. Chem. 115, 89-97.
    • (2005) Biophys. Chem , vol.115 , pp. 89-97
    • Cooper, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.