-
1
-
-
0034681301
-
Crystal structures of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase complexed with nucleic acid: Functional implications for template-primer binding to the fingers domain
-
Najmudin,S., Cote,M.L., Sun,D., Yohannan,S., Montano,S.P., Gu,J. and Georgiadis,M.M. (2000) Crystal structures of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase complexed with nucleic acid: Functional implications for template-primer binding to the fingers domain. J. Mol. Biol., 296, 613-632.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 613-632
-
-
Najmudin, S.1
Cote, M.L.2
Sun, D.3
Yohannan, S.4
Montano, S.P.5
Gu, J.6
Georgiadis, M.M.7
-
2
-
-
0033827849
-
Use of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase to facilitate crystallization and analysis of a pseudo-16mer DNA molecule containing G-A mispairs
-
Cote,M.L., Yohannan,S.J. and Georgiadis,M.M. (2000) Use of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase to facilitate crystallization and analysis of a pseudo-16mer DNA molecule containing G-A mispairs. Acta Crystallogr. D Biol. Crystallogr., 56, 1120-1131.
-
(2000)
Acta Crystallogr. D Biol. Crystallogr.
, vol.56
, pp. 1120-1131
-
-
Cote, M.L.1
Yohannan, S.J.2
Georgiadis, M.M.3
-
3
-
-
0034827878
-
Structure of a pseudo-16mer DNA with stacked guanines and two G-A mispairs complexed with the N-terminal fragment of Moloney murine leukemia virus reverse transcriptase
-
Cote,M.L. and Georgiadis,M.M. (2001) Structure of a pseudo-16mer DNA with stacked guanines and two G-A mispairs complexed with the N-terminal fragment of Moloney murine leukemia virus reverse transcriptase. Acta Crystallogr. D Biol. Crystallogr., 57, 1238-1250.
-
(2001)
Acta Crystallogr. D Biol. Crystallogr.
, vol.57
, pp. 1238-1250
-
-
Cote, M.L.1
Georgiadis, M.M.2
-
4
-
-
0038004737
-
Staying straight with A-tracts: A DNA analog of the HIV-1 polypurine tract
-
Cote,M.L., Pflomm,M. and Georgiadis,M.M. (2003) Staying straight with A-tracts: A DNA analog of the HIV-1 polypurine tract. J. Mol. Biol., 330, 57-74.
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 57-74
-
-
Cote, M.L.1
Pflomm, M.2
Georgiadis, M.M.3
-
5
-
-
0031854137
-
Cloning, expression, and purification of a catalytic fragment of Moloney murine leukemia virus reverse transcriptase: Crystallization of nucleic acid complexes
-
Sun,D., Jessen,S., Liu,C., Liu,X., Najmudin,S. and Georgiadis,M.M. (1998) Cloning, expression, and purification of a catalytic fragment of Moloney murine leukemia virus reverse transcriptase: Crystallization of nucleic acid complexes. Protein Sci., 7, 1575-1582.
-
(1998)
Protein Sci.
, vol.7
, pp. 1575-1582
-
-
Sun, D.1
Jessen, S.2
Liu, C.3
Liu, X.4
Najmudin, S.5
Georgiadis, M.M.6
-
6
-
-
0029059536
-
DNA sequence preferences of several AT-selective minor groove binding ligands
-
Abu-Daya,A., Brown,P.M. and Fox,K.R. (1995) DNA sequence preferences of several AT-selective minor groove binding ligands. Nucleic Acids Res., 23, 3385-3392.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 3385-3392
-
-
Abu-Daya, A.1
Brown, P.M.2
Fox, K.R.3
-
7
-
-
0021959842
-
The molecular origin of DNA-drug specificity in netropsin and distamycin
-
Kopka,M.L., Yoon,C., Goodsell,D., Pjura,P. and Dickerson,R.E. (1985) The molecular origin of DNA-drug specificity in netropsin and distamycin. Proc. Natl Acad. Sci. USA, 82, 1376-1380.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 1376-1380
-
-
Kopka, M.L.1
Yoon, C.2
Goodsell, D.3
Pjura, P.4
Dickerson, R.E.5
-
8
-
-
0028956354
-
Refinement of netropsin bound to DNA: Bias and feedback in electron density map interpretation
-
Goodsell,D.S., Kopka,M.L. and Dickerson,R.E. (1995) Refinement of netropsin bound to DNA: Bias and feedback in electron density map interpretation. Biochemistry, 34, 4983-4993.
-
(1995)
Biochemistry
, vol.34
, pp. 4983-4993
-
-
Goodsell, D.S.1
Kopka, M.L.2
Dickerson, R.E.3
-
9
-
-
0029137934
-
X-ray structures of the B-DNA dodecamer d(CGCGTTAACGCG) with an inverted central tetranucleotide and its netropsin complex
-
Balendiran,K. (1995) X-ray structures of the B-DNA dodecamer d(CGCGTTAACGCG) with an inverted central tetranucleotide and its netropsin complex. Acta Cryst. D, 51, 190-198.
-
(1995)
Acta Cryst. D
, vol.51
, pp. 190-198
-
-
Balendiran, K.1
-
11
-
-
0027219319
-
Molecular structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor groove binding drug netropsin
-
Tabernero,L., Verdaguer,N., Coll,M., Fita,I., van der Marel,G.A., van Boom,J.H., Rich,A. and Aymami,J. (1993) Molecular structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor groove binding drug netropsin. Biochemistry, 32, 8403-8410.
-
(1993)
Biochemistry
, vol.32
, pp. 8403-8410
-
-
Tabernero, L.1
Verdaguer, N.2
Coll, M.3
Fita, I.4
van der Marel, G.A.5
van Boom, J.H.6
Rich, A.7
Aymami, J.8
-
12
-
-
0030936234
-
Crystal structure of the DNA decamer d(CGCAATTGCG) complexed with the minor groove binding drug netropsin
-
Nunn,C.M., Garman,E. and Neidle,S. (1997) Crystal structure of the DNA decamer d(CGCAATTGCG) complexed with the minor groove binding drug netropsin. Biochemistry, 36, 4792-4799.
-
(1997)
Biochemistry
, vol.36
, pp. 4792-4799
-
-
Nunn, C.M.1
Garman, E.2
Neidle, S.3
-
13
-
-
0021834118
-
Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G
-
Kopka,M.L., Yoon,C., Goodsell,D., Pjura,P. and Dickerson,R.E. (1985) Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G. J. Mol. Biol., 183, 553-563.
-
(1985)
J. Mol. Biol.
, vol.183
, pp. 553-563
-
-
Kopka, M.L.1
Yoon, C.2
Goodsell, D.3
Pjura, P.4
Dickerson, R.E.5
-
14
-
-
0026475822
-
Structural consequences of a carcinogenic alkylation lesion on DNA: Effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex
-
Sriram,M., van der Marel,G.A., Roelen,H.L., van Boom,J.H. and Wang,A.H. (1992) Structural consequences of a carcinogenic alkylation lesion on DNA: Effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex. Biochemistry, 31, 11823-11834.
-
(1992)
Biochemistry
, vol.31
, pp. 11823-11834
-
-
Sriram, M.1
van der Marel, G.A.2
Roelen, H.L.3
van Boom, J.H.4
Wang, A.H.5
-
15
-
-
0024495831
-
Molecular structure of the netropsin-d(CGCGATATCGCG) complex: DNA conformation in an alternating AT segment
-
Coll,M., Aymami,J., van der Marel,G.A., van Boom,J.H., Rich,A. and Wang,A.H. (1989) Molecular structure of the netropsin-d(CGCGATATCGCG) complex: DNA conformation in an alternating AT segment. Biochemistry, 28, 310-320.
-
(1989)
Biochemistry
, vol.28
, pp. 310-320
-
-
Coll, M.1
Aymami, J.2
van der Marel, G.A.3
van Boom, J.H.4
Rich, A.5
Wang, A.H.6
-
16
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Carter,J.C.W. and Sweet,R.M. (eds), Academic Press, NY
-
Otwinowski,Z. and Minor,W. (1997) Processing of X-ray diffraction data collected in oscillation mode. In Carter,J.C.W. and Sweet,R.M. (eds), Macromolecular Crystallography, part A. Academic Press, NY, Vol. 276, pp. 307-326.
-
(1997)
Macromolecular Crystallography
, vol.276
, Issue.PART A
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
17
-
-
84920325457
-
AMoRe: An automated package for molecular replacement
-
Navaza,J. (1994) AMoRe: An automated package for molecular replacement. Acta Cryst., A50, 157-163.
-
(1994)
Acta Cryst.
, vol.A50
, pp. 157-163
-
-
Navaza, J.1
-
18
-
-
0345983583
-
Modeling unusual nucleic acid structures
-
Leontes,N.B. and SantaLucia,,J.J. (eds), American Chemical Society, Washington, DC
-
Macke,T. and Case, D.A. (199 8) Modeling unusual nucleic acid structures. In Leontes,N.B. and SantaLucia,,J.J. (eds), Molecular Modeling of Nucleic Acids. American Chemical Society, Washington, DC, Vol. 1, pp. 379-393.
-
(1998)
Molecular Modeling of Nucleic Acids
, vol.1
, pp. 379-393
-
-
Macke, T.1
Case, D.A.2
-
19
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones,T.A., Zou,J.Y., Cowan,S.W. and Kjeldgaard,M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A, 47, 110-119.
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
20
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger,A.T., Adams,P.D., Clore,G.M., DeLano,W.L., Gros,P., Grosse-Kunstleve,R.W., Jiang,J.S., Kuszewski,J., Nilges,M., Pannu,N.S. et al. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr., 54, 905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
21
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis,P.J. (1991) MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst., 24, 946-950.
-
(1991)
J. Appl. Cryst.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
22
-
-
0028057108
-
Raster3D Version 2.0 - A program for photorealistic molecular graphics
-
Merritt,E.A. and Murphy,M.E.P. (1994) Raster3D Version 2.0 - a program for photorealistic molecular graphics. Acta Crystallogr. D Biol. Crystallogr., 50, 869-873.
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 869-873
-
-
Merritt, E.A.1
Murphy, M.E.P.2
-
23
-
-
0000913086
-
A fast algorithm for rendering space-filling molecule pictures
-
Bacon,D.J. and Anderson,W.F. (1988) A fast algorithm for rendering space-filling molecule pictures. J. Mol. Graphics, 6, 219-220.
-
(1988)
J. Mol. Graphics
, vol.6
, pp. 219-220
-
-
Bacon, D.J.1
Anderson, W.F.2
-
24
-
-
0029645414
-
Mechanistic implications from the structure of a catalytic fragment of Moloney murine leukemia virus reverse transcriptase
-
Georgiadis,M.M., Jessen,S.M., Ogata,C.M., Telesnitsky,A., Goff,S.P. and Hendrickson,W.A. (1995) Mechanistic implications from the structure of a catalytic fragment of Moloney murine leukemia virus reverse transcriptase. Structure, 3, 879-892.
-
(1995)
Structure
, vol.3
, pp. 879-892
-
-
Georgiadis, M.M.1
Jessen, S.M.2
Ogata, C.M.3
Telesnitsky, A.4
Goff, S.P.5
Hendrickson, W.A.6
-
25
-
-
0242396923
-
3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
-
Lu,X.J. and Olson,W.K. (2003) 3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids Res., 31, 5108-5121.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 5108-5121
-
-
Lu, X.J.1
Olson, W.K.2
-
26
-
-
0032544507
-
Two distinct modes of protein-induced bending in DNA
-
El Hassan,M.A. and Calladine,C.R. (1998) Two distinct modes of protein-induced bending in DNA. J. Mol. Biol., 282, 331-343.
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 331-343
-
-
El Hassan, M.A.1
Calladine, C.R.2
-
27
-
-
0020359857
-
Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG
-
Fratini,A.V., Kopka,M.L., Drew,H.R. and Dickerson,R.E. (1982) Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG. J. Biol. Chem., 257, 14686-14707.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 14686-14707
-
-
Fratini, A.V.1
Kopka, M.L.2
Drew, H.R.3
Dickerson, R.E.4
-
28
-
-
0035253618
-
Induced fit DNA recognition by a minor groove binding analogue of Hoechst 33258: Fluctuations in DNA A tract structure investigated by NMR and molecular dynamics
-
Bockstock-Smith,C.E., Harris,S.A., Laughton,C.A. and Searle,M.S. (2001) Induced fit DNA recognition by a minor groove binding analogue of Hoechst 33258: Fluctuations in DNA A tract structure investigated by NMR and molecular dynamics. Nucleic Acids Res., 29, 693-702.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 693-702
-
-
Bockstock-Smith, C.E.1
Harris, S.A.2
Laughton, C.A.3
Searle, M.S.4
-
30
-
-
0034141784
-
Sequence-dependent variation in DNA minor groove width dictates orientational preference of Hoechst 33258 in A-tract recognition: Solution NMR structure of the 2:1 complex with d(CTTTTTGCAAAAAG)
-
Gavathiotis,E., Sharman,G.J. and Searle,M.S. (2000) Sequence-dependent variation in DNA minor groove width dictates orientational preference of Hoechst 33258 in A-tract recognition: Solution NMR structure of the 2:1 complex with d(CTTTTTGCAAAAAG). Nucleic Acids Res., 28, 728-735.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 728-735
-
-
Gavathiotis, E.1
Sharman, G.J.2
Searle, M.S.3
-
32
-
-
0034622566
-
Binding of distamycin A and netropsin to the 12mer DNA duplexes containing mixed AT.GC sequences with at most five or three successive AT base pairs
-
Lah,J. and Vesnaver,G. (2000) Binding of distamycin A and netropsin to the 12mer DNA duplexes containing mixed AT.GC sequences with at most five or three successive AT base pairs. Biochemistry, 39, 9317-9326.
-
(2000)
Biochemistry
, vol.39
, pp. 9317-9326
-
-
Lah, J.1
Vesnaver, G.2
-
33
-
-
84893482610
-
A solution for the best rotation to relate two sets of vectors
-
Kabsch,W. (1976) A solution for the best rotation to relate two sets of vectors. Acta Crystallogr. A, 32, 922-923.
-
(1976)
Acta Crystallogr. A
, vol.32
, pp. 922-923
-
-
Kabsch, W.1
-
34
-
-
0037779018
-
A graphical user interface to the CCP4 program suite
-
Potterton,E., Briggs,P., Turkenburg,M. and Dodson,E. (2003) A graphical user interface to the CCP4 program suite. Acta Crystallogr. D Biol. Crystallogr., 59, 1131-1137.
-
(2003)
Acta Crystallogr. D Biol. Crystallogr.
, vol.59
, pp. 1131-1137
-
-
Potterton, E.1
Briggs, P.2
Turkenburg, M.3
Dodson, E.4
|