-
1
-
-
0034830898
-
Molecular recognition of DNA by small molecules
-
Dervan, P. B. (2001) Molecular recognition of DNA by small molecules. Bioorg Med. Chem. 9, 2215-2235.
-
(2001)
Bioorg Med. Chem.
, vol.9
, pp. 2215-2235
-
-
Dervan, P.B.1
-
2
-
-
0344641913
-
Sequence-specific DNA recognition by polyamides
-
Dervan, P. B., and Buerli, R. W. (1999) Sequence-specific DNA recognition by polyamides. Curr. Opin. Chem. Biol. 3, 688-693.
-
(1999)
Curr. Opin. Chem. Biol.
, vol.3
, pp. 688-693
-
-
Dervan, P.B.1
Buerli, R.W.2
-
4
-
-
0032824383
-
Synthetic DNA minor-groove binding drugs
-
Reddy, B. S. P., Sondhi, S. M., and Lown, J. W. (1999) Synthetic DNA minor-groove binding drugs. Pharmacol. Ther. 84, 1-111.
-
(1999)
Pharmacol. Ther.
, vol.84
, pp. 1-111
-
-
Reddy, B.S.P.1
Sondhi, S.M.2
Lown, J.W.3
-
5
-
-
0034951136
-
DNA minor-groove recognition by small molecules
-
Neidle, S. (2001) DNA minor-groove recognition by small molecules. Natural Prod. Rep. 18, 291-309.
-
(2001)
Natural Prod. Rep.
, vol.18
, pp. 291-309
-
-
Neidle, S.1
-
6
-
-
0031424230
-
Crystallographic insights into DNA minor groove recognition by drugs
-
Neidle, S. (1997) Crystallographic insights into DNA minor groove recognition by drugs. Biopolymers 44, 105-121.
-
(1997)
Biopolymers
, vol.44
, pp. 105-121
-
-
Neidle, S.1
-
7
-
-
0028206145
-
Effects of minor groove binding drugs on the interaction of TATA box binding protein and TFIIA with DNA
-
Chiang, S.-Y., Welch, J., Rauscher, F. J., III, and Beerman, T. A. (1994) Effects of minor groove binding drugs on the interaction of TATA box binding protein and TFIIA with DNA. Biochemistry 33, 7033-7040.
-
(1994)
Biochemistry
, vol.33
, pp. 7033-7040
-
-
Chiang, S.-Y.1
Welch, J.2
Rauscher F.J. III3
Beerman, T.A.4
-
8
-
-
0032573224
-
Inhibition of RNA polymerase II transcription in human cells by synthetic DNA-binding ligands
-
Dickinson, L. A., Gulizia, R. J., Trauger, J. W., Baird, E. E., Mosier, D. E., Gottesfeld, J. M., and Dervan, P. B. (1998) Inhibition of RNA polymerase II transcription in human cells by synthetic DNA-binding ligands. Proc. Natl. Acad. Sci. U.S.A. 95, 12739-12741.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 12739-12741
-
-
Dickinson, L.A.1
Gulizia, R.J.2
Trauger, J.W.3
Baird, E.E.4
Mosier, D.E.5
Gottesfeld, J.M.6
Dervan, P.B.7
-
9
-
-
0035940428
-
Allosteric interaction of minor groove binding ligands with UL9-DNA complexes
-
Kwok, Y., Zhang, W., Schroth, G. P., Liang, C. H., Alexi, N., and Bruice, T. W. (2001) Allosteric interaction of minor groove binding ligands with UL9-DNA complexes. Biochemistry 40, 12628-12638.
-
(2001)
Biochemistry
, vol.40
, pp. 12628-12638
-
-
Kwok, Y.1
Zhang, W.2
Schroth, G.P.3
Liang, C.H.4
Alexi, N.5
Bruice, T.W.6
-
10
-
-
0035845565
-
Inhibition of transcription factor-DNA complexes and gene expression by a microgonotropen
-
White, C. M., Satz, A. L., Bruice, T. C., and Beerman, T. A. (2001) Inhibition of transcription factor-DNA complexes and gene expression by a microgonotropen. Proc. Natl. Acad. Sci. U.S.A. 98, 10590-10595.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 10590-10595
-
-
White, C.M.1
Satz, A.L.2
Bruice, T.C.3
Beerman, T.A.4
-
11
-
-
0036183456
-
Promoter scanning for transcription inhibition with DNA-binding polyamides
-
Ehley, J. A., Melander, C., Herman, D., Baird, E. E., Ferguson, H. A., Goodrich, J. A., Dervan, P. B., and Gottesfield, J. M. (2002) Promoter scanning for transcription inhibition with DNA-binding polyamides. Mol. Cell Biol. 22, 1723-1733.
-
(2002)
Mol. Cell Biol.
, vol.22
, pp. 1723-1733
-
-
Ehley, J.A.1
Melander, C.2
Herman, D.3
Baird, E.E.4
Ferguson, H.A.5
Goodrich, J.A.6
Dervan, P.B.7
Gottesfield, J.M.8
-
12
-
-
0036293526
-
Structure of a β-alanine-linked polyamide bound to a full helical turn of purine tract DNA in the 1:1 motif
-
Urbach, A. R., Love, J. J., Ross, S. A., and Dervan, P. B. (2002) Structure of a β-alanine-linked polyamide bound to a full helical turn of purine tract DNA in the 1:1 motif. J Mol. Biol. 320, 55-71.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 55-71
-
-
Urbach, A.R.1
Love, J.J.2
Ross, S.A.3
Dervan, P.B.4
-
13
-
-
0037134919
-
Recognition of ten base pairs by head-to-head hairpin dimers
-
Weyermann, P., and Dervan, P. B. (2002) Recognition of ten base pairs by head-to-head hairpin dimers. J. Am. Chem. Soc. 124, 6872-6878.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 6872-6878
-
-
Weyermann, P.1
Dervan, P.B.2
-
14
-
-
0029043115
-
Microbial mutagenic effects of the DNA minor groove binder Pibenzimol (Hoechst 33258) and a series of mustard analogues
-
Ferguson, L. R., and Denny, W. A. (1995) Microbial mutagenic effects of the DNA minor groove binder Pibenzimol (Hoechst 33258) and a series of mustard analogues. Murat. Res. 329, 19-27.
-
(1995)
Murat. Res.
, vol.329
, pp. 19-27
-
-
Ferguson, L.R.1
Denny, W.A.2
-
15
-
-
0025970948
-
Phase II Study of Pibenzimol in pancreatic cancer - A Southwest Oncology Group study
-
Kraut, E., Fleming, T., Segal, M., Neidhart, J., Behrens, B. C., and MacDonald, J. (1999) Phase II Study of Pibenzimol in pancreatic cancer - a Southwest Oncology Group study. Invest. New Drugs 9, 95-96.
-
(1999)
Invest. New Drugs
, vol.9
, pp. 95-96
-
-
Kraut, E.1
Fleming, T.2
Segal, M.3
Neidhart, J.4
Behrens, B.C.5
MacDonald, J.6
-
16
-
-
0035056991
-
Transcriptional regulation of topoisomerase II alpha at confluence and pharmacological modulation of expression by bis-benzimidazole drugs
-
Tolner, B., Hartley, J. A., and Hochhauser, D. (2001) Transcriptional regulation of topoisomerase II alpha at confluence and pharmacological modulation of expression by bis-benzimidazole drugs. Mol. Pharmacol. 59, 699-706.
-
(2001)
Mol. Pharmacol.
, vol.59
, pp. 699-706
-
-
Tolner, B.1
Hartley, J.A.2
Hochhauser, D.3
-
17
-
-
0032913201
-
Bis-benzimidazole anticancer agents: Targeting human tumour helicases
-
Soderlind, K. J., Gorodetsky, B., Singh, A. K., Bachur, N. R., Miller, G. G., and Lown, J. W. (1999) Bis-benzimidazole anticancer agents: targeting human tumour helicases. Anticancer Drug Des. 14, 19-36.
-
(1999)
Anticancer Drug Des.
, vol.14
, pp. 19-36
-
-
Soderlind, K.J.1
Gorodetsky, B.2
Singh, A.K.3
Bachur, N.R.4
Miller, G.G.5
Lown, J.W.6
-
18
-
-
0022423459
-
Molecular recognition of B-DNA by Hoechst 33258
-
Harshman, K. D., and Dervan, P. B. (1985) Molecular recognition of B-DNA by Hoechst 33258. Nucleic Acids Res. 13, 4825-4835.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 4825-4835
-
-
Harshman, K.D.1
Dervan, P.B.2
-
20
-
-
84961983931
-
Intrinsic conformational preferences of the Hoechst dye family and their influence on DNA binding
-
Vega, M. C., Coll, M., and Aleman, C. (1996) Intrinsic conformational preferences of the Hoechst dye family and their influence on DNA binding. Eur. J. Biochem. 239, 376-383.
-
(1996)
Eur. J. Biochem.
, vol.239
, pp. 376-383
-
-
Vega, M.C.1
Coll, M.2
Aleman, C.3
-
23
-
-
0028942808
-
Analysis of van der Waals and electrostatic contributions in the interactions of minor-groove binding benzimidazoles with DNA
-
Czarny, A., Boykin, D. W., Wood, A. A., Nunn, C. M., Neidle, S., Zhao, N., and Wilson, W. D. (1995) Analysis of van der Waals and electrostatic contributions in the interactions of minor-groove binding benzimidazoles with DNA. J. Am. Chem. Soc. 117, 4716-4717.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 4716-4717
-
-
Czarny, A.1
Boykin, D.W.2
Wood, A.A.3
Nunn, C.M.4
Neidle, S.5
Zhao, N.6
Wilson, W.D.7
-
25
-
-
0031472259
-
A terbenzimidazole that preferentially binds and conformationally alters structurally distinct DNA duplex domains: A potential mechanism for topoisomerase I poisoning
-
Pilch, D. S., Xu, Z., Sun, Q., LaVoie, E. J., Liu, L. F., and Breslauer, K. J. (1997) A terbenzimidazole that preferentially binds and conformationally alters structurally distinct DNA duplex domains: a potential mechanism for topoisomerase I poisoning. Proc. Natl. Acad. Sci. U.S.A 94, 13565-13570.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 13565-13570
-
-
Pilch, D.S.1
Xu, Z.2
Sun, Q.3
LaVoie, E.J.4
Liu, L.F.5
Breslauer, K.J.6
-
26
-
-
0001593451
-
Quantitative structure-activity relationships on 5-substituted ter-benzimidazoles as topoisomerase in poisons and antitumor agents
-
Kim, J. S., Sun, Q., Chaing, Y., Liu, A., Liu, L. F., and LaVoie, E. J. (1998) Quantitative structure-activity relationships on 5-substituted ter-benzimidazoles as topoisomerase in poisons and antitumor agents. Bioorg. Med. Chem. 6, 163-172.
-
(1998)
Bioorg. Med. Chem.
, vol.6
, pp. 163-172
-
-
Kim, J.S.1
Sun, Q.2
Chaing, Y.3
Liu, A.4
Liu, L.F.5
LaVoie, E.J.6
-
27
-
-
0032502313
-
DNA minor groove binding-directed poisoning of human DNA topoisomerase I by terbenzimidazoles
-
Xu, Z., Tsai-Kun, L., Kim, J. S., LaVoie, E. J., Breslauer, K. L., Liu, L. F., and Pilch, D. S. (1998) DNA minor groove binding-directed poisoning of human DNA topoisomerase I by terbenzimidazoles. Biochemistry 37, 3558-3566.
-
(1998)
Biochemistry
, vol.37
, pp. 3558-3566
-
-
Xu, Z.1
Tsai-Kun, L.2
Kim, J.S.3
LaVoie, E.J.4
Breslauer, K.L.5
Liu, L.F.6
Pilch, D.S.7
-
28
-
-
0034811338
-
Trisbenzimidazole derivatives: Design, synthesis and DNA sequence recognition
-
Ji, Y. H., Bur, D., Hasler, W., Runtz, V., Dom, A., Bailly, C., Waring, M. J., Hochstrasser, R., and Leupin, W. (2001) Trisbenzimidazole derivatives: design, synthesis and DNA sequence recognition. Bioorg. Med. Chem. 9, 2905-2919.
-
(2001)
Bioorg. Med. Chem.
, vol.9
, pp. 2905-2919
-
-
Ji, Y.H.1
Bur, D.2
Hasler, W.3
Runtz, V.4
Dom, A.5
Bailly, C.6
Waring, M.J.7
Hochstrasser, R.8
Leupin, W.9
-
29
-
-
0029857504
-
Isohelicity and phasing in drug-DNA sequence recognition: Crystal structure of a tris (benzimidazole)-oligonucleotide complex
-
Clark, G. R., Gray, E. J., Li, Y.-H., Leupin, W., and Neidle, S. (1996). Isohelicity and phasing in drug-DNA sequence recognition: crystal structure of a tris (benzimidazole)-oligonucleotide complex. Biochemistry 35, 13745-13752.
-
(1996)
Biochemistry
, vol.35
, pp. 13745-13752
-
-
Clark, G.R.1
Gray, E.J.2
Li, Y.-H.3
Leupin, W.4
Neidle, S.5
-
30
-
-
0033168554
-
DNA minor groove recognition of a non-self-complementary AT-rich sequence by a tris-benzimidazole ligand
-
Aymami, J., Nunn, C. M., and Neidle, S. (1999) DNA minor groove recognition of a non-self-complementary AT-rich sequence by a tris-benzimidazole ligand. Nucleic Acids Res. 27, 2691-2698.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2691-2698
-
-
Aymami, J.1
Nunn, C.M.2
Neidle, S.3
-
31
-
-
0034837071
-
Recognition of nine base pairs in the minor groove of DNA by a tripyrrole peptide-Hoechst conjugate
-
Satz, A. L., and Bruice, T. C. (2001) Recognition of nine base pairs in the minor groove of DNA by a tripyrrole peptide-Hoechst conjugate. J. Am. Chem. Soc. 123, 2469-2477.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 2469-2477
-
-
Satz, A.L.1
Bruice, T.C.2
-
32
-
-
0036132228
-
Recognition of nine base pair sequences in the minor groove of DNA at subpicomolar concentrations by a novel microgonotropen
-
Satz, A. L., and Bruice, T. C. (2002) Recognition of nine base pair sequences in the minor groove of DNA at subpicomolar concentrations by a novel microgonotropen. Bioorg. Med. Chem. 10, 241-252.
-
(2002)
Bioorg. Med. Chem.
, vol.10
, pp. 241-252
-
-
Satz, A.L.1
Bruice, T.C.2
-
33
-
-
0033591372
-
Symmetric bis-benzimidazoles, a new class of sequence-selective DNA-binding molecules
-
Neidle, S., Mann, J., Rayner, E. L., Baron, A., Opoku-Boachen, Y., Simpson, I. J., Smith, N. J., Fox, K. R., Hartley, J. A., and Kelland, L. R. (1999) Symmetric bis-benzimidazoles, a new class of sequence-selective DNA-binding molecules. J. Chem. Soc., Chem. Commun. 929-930.
-
(1999)
J. Chem. Soc., Chem. Commun.
, pp. 929-930
-
-
Neidle, S.1
Mann, J.2
Rayner, E.L.3
Baron, A.4
Opoku-Boachen, Y.5
Simpson, I.J.6
Smith, N.J.7
Fox, K.R.8
Hartley, J.A.9
Kelland, L.R.10
-
34
-
-
0035905830
-
A new class of symmetric bis-benzimidazole-based DNA minor groove-binding agents showing antitumor activity
-
Mann, J., Baron, A., Opoku-Boahen, Y., Johansson, E., Parkinson, G., Kelland, L. R., and Neidle, S. (2001) A new class of symmetric bis-benzimidazole-based DNA minor groove-binding agents showing antitumor activity. J. Med. Chem. 44, 138-144.
-
(2001)
J. Med. Chem.
, vol.44
, pp. 138-144
-
-
Mann, J.1
Baron, A.2
Opoku-Boahen, Y.3
Johansson, E.4
Parkinson, G.5
Kelland, L.R.6
Neidle, S.7
-
35
-
-
0037850336
-
-
Molecular Simulations Inc., San Diego
-
INSIGHT II Modelling Environment, Molecular Simulations Inc., San Diego, 1999.
-
INSIGHT II Modelling Environment
, pp. 1999
-
-
-
36
-
-
0029011701
-
A second-generation force field for the simulation of proteins and nucleic acids
-
Cornell, W. D., Cieplak, P., Bayly, C. I., Gould, I. R., Merz, K., Ferguson, D. M., Spellmeyer, D. C., Fox, T., Cardwell, J. W., and Kollman, P. A. (1995) A second-generation force field for the simulation of proteins and nucleic acids. J. Am. Chem. Soc. 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Cardwell, J.W.9
Kollman, P.A.10
-
37
-
-
0037850334
-
-
Hypercube Inc., Gainesville, FL
-
HYPERCHEM, v. 7.03, Hypercube Inc., Gainesville, FL, 2002.
-
HYPERCHEM, V. 7.03
, pp. 2002
-
-
-
38
-
-
0842341771
-
AM1: A New General Purpose Quantum Mechanical Molecular Model
-
Dewar, M. J. S., Zoebisch, E. G., Healy, E. F., and Stewart. J. J. P. (1985) AM1: A New General Purpose Quantum Mechanical Molecular Model. J. Am. Chem. Soc. 107, 3902-3909.
-
(1985)
J. Am. Chem. Soc.
, vol.107
, pp. 3902-3909
-
-
Dewar, M.J.S.1
Zoebisch, E.G.2
Healy, E.F.3
Stewart, J.J.P.4
-
39
-
-
0037201090
-
Synthesis of a novel dimeric bis-benzimidazole with site-selective DNA-binding properties
-
Sun, X.-W., Mann, J., and Neidle, S. (2002) Synthesis of a novel dimeric bis-benzimidazole with site-selective DNA-binding properties. Tetrahedron Lett. 43, 7239-7241.
-
(2002)
Tetrahedron Lett.
, vol.43
, pp. 7239-7241
-
-
Sun, X.-W.1
Mann, J.2
Neidle, S.3
-
40
-
-
0021140818
-
DNA structural variations in the E. coli tyr T promoter
-
Drew, H. R., and Travers, A. A. (1984) DNA structural variations in the E. coli tyr T promoter. Cell 37, 491-502.
-
(1984)
Cell
, vol.37
, pp. 491-502
-
-
Drew, H.R.1
Travers, A.A.2
-
41
-
-
0035876020
-
Preferred binding sites for [N-MeCYs(3), N-MeCys(7)] TANDEM determined using a universal footprinting substrate
-
Lavesa, M., and Fox, K. R. (2001) Preferred binding sites for [N-MeCYs(3), N-MeCys(7)] TANDEM determined using a universal footprinting substrate. Anal. Biochem. 293, 246-250.
-
(2001)
Anal. Biochem.
, vol.293
, pp. 246-250
-
-
Lavesa, M.1
Fox, K.R.2
-
42
-
-
0028899328
-
Comparison of different footprinting methodologies for detecting binding sites for a small ligand on DNA
-
Bailly, C., and Waring, M. J. (1995) Comparison of different footprinting methodologies for detecting binding sites for a small ligand on DNA. J. Biomol. Struct. Dyn. 12, 869-898.
-
(1995)
J. Biomol. Struct. Dyn.
, vol.12
, pp. 869-898
-
-
Bailly, C.1
Waring, M.J.2
-
43
-
-
0034811338
-
Tris-benzimidazole derivatives: Design, synthesis and DNA sequence recognition
-
Ji, Y. H., Bur, D., Hasler, W., Bailly, C., Waring, M. J., Hochstrasser, R., and Leupin, W. (2001) Tris-benzimidazole derivatives: Design, synthesis and DNA sequence recognition. Bioorg. Med. Chem. 9, 2905-2919.
-
(2001)
Bioorg. Med. Chem.
, vol.9
, pp. 2905-2919
-
-
Ji, Y.H.1
Bur, D.2
Hasler, W.3
Bailly, C.4
Waring, M.J.5
Hochstrasser, R.6
Leupin, W.7
-
44
-
-
0023915860
-
Assignment of DNA binding sites for 4′,6-diamidine-2-phenylindole and bisbenzimide (Hoechst 33258). A comparative footprinting study
-
Portugal, J., and Waring, M. J. (1987) Assignment of DNA binding sites for 4′,6-diamidine-2-phenylindole and bisbenzimide (Hoechst 33258). A comparative footprinting study. Biochim. Biophys. Acta 949, 158-168.
-
(1987)
Biochim. Biophys. Acta
, vol.949
, pp. 158-168
-
-
Portugal, J.1
Waring, M.J.2
-
45
-
-
0037092016
-
Influence of compound structure on affinity, sequence selectivity and mode of binding to DNA for unfused aromatic dications related to furamidine
-
Nguyen, B., Tardy, C., Bailly, C., Colson, P., Houssier, C., Kumar, A., Boykin, D. W., and Wilson, W. D. (2002) Influence of compound structure on affinity, sequence selectivity and mode of binding to DNA for unfused aromatic dications related to furamidine. Biopolymers 63, 281-297.
-
(2002)
Biopolymers
, vol.63
, pp. 281-297
-
-
Nguyen, B.1
Tardy, C.2
Bailly, C.3
Colson, P.4
Houssier, C.5
Kumar, A.6
Boykin, D.W.7
Wilson, W.D.8
-
46
-
-
0026624859
-
Structure of a B-DNA decamer with a central T-A step: C-G-A-T-T-A-A-T-C-G
-
Quintana, J. R., Grzeskowiak, K., Yanagi, K., and Dickerson, R. E. (1992) Structure of a B-DNA decamer with a central T-A step: C-G-A-T-T-A-A-T-C-G. J. Mol. Biol. 225, 379-385.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 379-385
-
-
Quintana, J.R.1
Grzeskowiak, K.2
Yanagi, K.3
Dickerson, R.E.4
-
48
-
-
0037046517
-
Distribution of furamidine analogues in tumor cells: Influence of the number of positive charges
-
Lansiaux, A., Dassonneville, L., Facompré, M., Kumar, A., Stephens, C. E., Bajic, M., Tanious, F., Wilson, W. D., Boykin, D. W., and Bailly, C. (2002) Distribution of furamidine analogues in tumor cells: Influence of the number of positive charges. J. Med. Chem. 45, 1994-2002.
-
(2002)
J. Med. Chem.
, vol.45
, pp. 1994-2002
-
-
Lansiaux, A.1
Dassonneville, L.2
Facompré, M.3
Kumar, A.4
Stephens, C.E.5
Bajic, M.6
Tanious, F.7
Wilson, W.D.8
Boykin, D.W.9
Bailly, C.10
-
49
-
-
0029059536
-
DNA sequence preferences of several AT-selective minor groove binding ligands
-
Abu-Daya, A., Brown, P. M., and Fox, K. (1995) DNA sequence preferences of several AT-selective minor groove binding ligands. Nucleic Acids Res. 11, 3385-3392.
-
(1995)
Nucleic Acids Res.
, vol.11
, pp. 3385-3392
-
-
Abu-Daya, A.1
Brown, P.M.2
Fox, K.3
|