Diamond and biology

Journal of the Royal Society Interface

Volumn 4, Issue 14, 2007, Pages 439-461

  Nebel, Christoph E ^a   Shin, Dongchan ^a   Rezek, Bohuslav ^a   Tokuda, Norio ^a   Uetsuka, Hiroshi ^a   Watanabe, Hideyuki ^a  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

Biofunctionalization; Diamond; DNA hybridization detection

Indexed keywords

AMINE; DIAMOND; MOLECULAR LAYER;

ATOMIC FORCE MICROSCOPY; CHEMICAL STRUCTURE; CYCLIC POTENTIOMETRY; DNA HYBRIDIZATION; ELECTROCHEMISTRY; MOLECULAR BIOLOGY; PHOTOCHEMISTRY; REVIEW; X RAY PHOTOELECTRON SPECTROSCOPY;

EID: 34249810650     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2006.0196     Document Type: Review

References (85)

1. Allongue, P., Henry de Villeneuve, C., Cherouvrier, G., Cortes, R. & Bernard, M.-C. 2003 Phenyl layers on H-Si(111) by electrochemical reduction of diazonium salts: monolayer versus multilayer formation. J. Electroanal. Chem. 550-551, 161-174. (doi:10.1016/S0022-0728(03)00076-7)
2. Angus, J. C., Pleskov, Y. V. & Eaton, S. C. 2004 Electrochemistry of diamond. In Thin film diamond II, vol. 77 (eds C. E. Nebel & J. Ristein) Semiconductors and semimetals, p. 97. Amsterdam, The Netherlands; New York, NY: Elsevier; Academic Press.
3. Bergonzo, P. & Jackman, R. 2004 Diamond-based radiation and photon detectors. In Thin-film diamond I, vol. 76 (eds C. E. Nebel & J. Ristein) Semiconductors and semimetals, pp. 197-309. Amsterdam, The Netherlands: Elsevier.
4. Bergonzo, P., Tromson, D. & Mer, C. 2003 Radiation detection devices made from CVD diamond. Semicond. Sci. Technol. 18, S105-S112. (doi:10.1088/0268-1242/18/3/315)
5. Borst, T. H. & Weis, O. 1996 Boron-doped homoepitaxial diamond layers: fabrication, characterization, and electronic applicationssol. Phys. Status Solidi A 154, 423-444.
6. Bousse, L., de Rooji, N. F. & Bergeveld, P. 1983 Operation of chemically sensitive field-effect sensors as a function of the insulator electrolyte interface. IEEE Trans. Electron Dev. 30, 1263-1270.
7. Braun, T., Barwich, V., Ghatkesar, M. K., Bredekamp, A. H., Gerber, C., Hegner, M. & Lang, H. P. 2005 Micromechanical mass sensors for biomolecular detection in physiological environment. Phys. Rev. E 72, 31 907. (doi:10.1103/PhysRevE.72.031907)
8. Brawer, M. K. 2001 Prostate specific antigen. New York, NY: Marcel Dekker.
9. Buriak, J. M. 2002a Organometallic chemistry on silicon and germanium surfaces. Chem. Rev. 102, 1271-1308. (doi:10.1021/cr000064s)
10. Buriak, J. M. 2002b Organometallic chemistry on silicon and germanium surfaces. Chem. Rev. 102, 1271-1308. (doi:10.1021/cr000064s)
11. Carlisle, J. A. & Auciello, O. 2003 Ultrananocrystalline diamond. Electrochem. Soc. Interface 12, 28-31.
12. Chang, H.-C., Chen, K. W. & Kwok, S. 2006 Nanodiamond as a possible carrier of extended red emission. Astrophys. J. 639, L63-L66. (doi:10.1086/502677)
13. Cicero, R. L., Chidsey, E. D., Lopinski, G. P., Wayner, D. D. M. & Wolkow, R. A. 2002 Olefin additions on H-Si(111): evidence for a surface chain reaction initiated at isolated dangling bonds. Langmuir 18, 305-307. (doi:10.1021/la010823h)
14. Collins, A. T., Dean, P. J., Lightowler, E. C. & Sherman, W. F. 1965 Acceptor-impurity infrared absorption in semiconducting synthetic diamond. Phys. Rev. 140, A1272-A1274. (doi:10.1103/PhysRev.140.A1272)
15. Cui, J. B., Ristein, J. & Ley, L. 1998 Electron affinity of the bare and hydrogen covered single crystal diamond (111) surface. Phys. Rev. Lett. 81, 429-432. (doi:10.1103/PhysRevLett.81.429)
16. Crampton, N., Bonass, W. A., Kirkham, J. & Thomson, N. H. 2005 Formation of aminosilane-functionalized mica for atomic force microscopy imaging of DNA. Langmuir 21, 7884-7891. (doi:10.1021/la050972q)
17. Erts, D., Polyakov, B., Olin, H. & Tuite, E. 2003 Spatial and mechanical properties of dilute DNA monolayers on gold imaged by AFM. J. Phys. Chem. B 107, 3591-3597. (doi:10.1021/jp0261657)
18. Etzioni, R., Urban, N., Ramsey, S., McIntosh, M., Schwartz, S., Reid, B., Radich, J., Anderson, G. & Hartwell, L. 2003 The case of early detection. Nat. Rev. Cancer 3, 243-252. (doi:10.1038/nrc1041)
19. Fujishima, A., Einaga, Y., Rao, T. N. & Tryk, D. A. 2005 Diamond electrochemistry. Amsterdam, The Netherlands; Tokyo, Japan: Elsevier; BKC.
20. Gi, R. S., Mizumasa, T., Akiba, Y., Hirose, Y., Kurosu, T. & Iida, M. 1995 Formation mechanism of p-type surface conductive layer on deposited diamond films. Jpn J. Appl. Phys. 34, 5550-5555. (doi:10.1143/JJAP.34.5550)
21. Granger, M. C., Xu, J., Strojek, J. W. & Swain, G. M. 1999 Polycrystalline diamond electrodes: basic properties and applications as amperometric detectors in flow injection analysis and liquid chromatography. Anal. Chim. Acta 397, 145-161. (doi:10.1016/S0003-2670(99)00400-6)
22. Granger, M. C. et al. 2000 Standard electrochemical behavior of high-quality, boron-doped polycrystalline diamond thin-film electrodes. Anal. Chem. 72, 3793-3804. (doi:10.1021/ac0000675)
23. Hamers, J. R., Butler, J. E., Lasseter, T., Nichols, B. M., Russell Jr, J. N., Tse, K.-Y. & Yang, W. 2005 Molecular and biomolecular monolayers on diamond as an interface to biology. Diamond Relat. Mater. 14, 661-668. (doi:10.1016/j.diamond.2004.09.018)
24. Han, S. W., Nakamura, C., Obataya, I., Nakamura, N. & Miyake, J. 2005 Gene expression using an ultrathin needle enabling accurate displacement and low invasiveness. Biochem. Biophys. Res. Commun. 332, 633-639. (doi:10.1016/j.bbrc.2005.04.059)
25. Härtl, A. et al. 2004 Protein-modified nanocrystalline diamond thin films for biosensor applications. Nat. Mater. 3, 736-742. (doi:10.1038/nmat1204)
26. Hashimoto, K., Ito, K. & Ishimori, Y. 1994 Sequence-specific gene detection with a gold electrode modified with DNA probes and an electrochemical active dye. Anal. Chem. 66, 3830-3833. (doi:10.1021/ac00093a045)
27. Ilic, B., Yang, Y., Aubin, K., Reichenbach, R., Krylov, S. & Craighead, H. G. 2005 Enumeration of DAN molecules bound to nanomechanical oscillator. Nano Lett. 5, 925-929. (doi:10.1021/nl050456k)
28. Ishige, Y., Shimoda, M. & Kamahori, M. 2006 Immobilization of DNA probes onto gold surface and its application to fully electric detection of DNA hybridization using field effect transistor sensor. Jpn J. Appl. Phys. 45, 3776-3783. (doi:10.1143/JJAP.45.3776)
29. Jackman, R. (ed.) 2003 Diamond electronics. Semicond. Sci. Technol. 18, S86-S95
30. Kelley, S. O., Boon, E. M., Barton, J. K., Jackson, N. M. & Hill, M. G. 1999 Single-base mismatch detection based on charge transduction through DNA. Nucleic Acids Res. 27, 4830-4837. (doi:10.1093/nar/27.24.4830)
31. Koizumi, S., Kamo, M., Sato, Y., Ozaki, H. & Inuzuka, T. 1997 Growth and characterization of phosphorous doped {111} homoepitaxial diamond thin films. Appl. Phys. Lett. 71, 1065-1067. (doi:10.1063/1.119729)
32. Kondo, T., Einaga, Y., Sarada, B. V., Rao, T. N., Tryk, D. A. & Fujishima, A. 2002 Homoepitaxial single-crystal boron-doped diamond electrodes for electroanalysis. J. Electrochem. Soc. 149, E179-E184. (doi:10.1149/1.1471548)
33. Kono, S., Shiraishi, M., Goto, T., Abukawa, T., Tachiki, M. & Kawarada, H. 2005 An electron-spectroscopic view of CVD diamond surface conductivity. Diamond Relat. Mater. 14, 459-465. (doi:10.1016/j.diamond.2004.11.011)
34. Kremsky, J. N., Wooters, J. L., Dougherty, J. P., Meyers, R. E., Collins, M. & Brown, E. L. 1987 Immobilization of DNA via oligonucleotides containing an aldehyde or carboxylic-acid group at the 5′ terminus. Nucleic Acids Res. 15, 2891-2909.
35. Landstrass, M. I. & Ravi, K. V. 1998 Resistivity of chemical vapor-deposited diamond films. Appl. Phys. Lett. 55, 975-977. (doi:10.1063/1.101694)
36. Linford, M. R., Fenter, P., Eisenberg, P. M. & Chidsay, C. E. D. 1995 Alkyl monolayers on silicon prepared from 1-alkenes and hydrogen-terminated silicon. J. Am. Chem. Soc. 117, 3145-3155. (doi:10.1021/ ja00116a019)
37. Maier, F., Riedel, M., Mantel, B., Ristein, J. & Ley, L. 2000 Origin of surface conductivity in diamond. Phys. Rev. Lett. 85, 3472-3475. (doi:10.1103/PhysRevLett.85.3472)
38. Millan, K. M., Spurmanis, A. J. & Mikkelsen, S. R. 1992 Covalent immobilization of DNA into glassy-carbon electrodes. Electroanalysis 4, 929-932. (doi:10.1002/elan.1140041003)
39. Nazare, M. H. & Neves, A. J. 2001 Properties, growth and applications of diamond, (eds) EMIS Datareview Series No. 26, INSPEC publication.
40. Nebel, C. E. 2003a Electronic properties of CVD diamond. Semicond. Sci. Technol. 18, S1-S11. (doi:10.1088/0268-1242/18/3/ 301)
41. Nebel, C. E. 2003b Transport and defect properties of intrinsic and boron-doped diamond. In Thin-film diamond I (eds C. E. Nebel & J. Ristein) Semiconductors and semimetals, 76, p. 261. Amsterdam, The Netherlands: Elsevier.
42. Nebel, C. E. 2005 Surface transfer-doping of H-terminated diamond with adsorbates. New Diamond Front. Carbon Technol. 15, 247-264.
43. Nebel, C. E. & Ristein, J. (eds) 2003 Thin-film diamond I Semiconductors and semimetals, vol. 76. Amsterdam, The Netherlands; New York, NY: Elsevier; Academic Press.
44. Nebel, C. E. & Ristein, J. (eds) 2004 Thin-film diamond II Semiconductors and semimetals, vol. 77. Amsterdam, The Netherlands; New York, NY: Elsevier; Academic Press.
45. Nebel, C. E., Kato, H., Rezek, B., Shin, D., Takeuchi, D., Watanabe, H. & Yamamoto, T. 2006a Electrochemical properties of undoped hydrogen terminated CVD diamond. Diamond Relat. Mater. 15, 264-268. (doi:10.1016/j.diamond.2005.08.012)
46. Nebel, C. E., Rezek, B., Shin, D., Watanabe, H. & Yamamoto, T. 2006b Electronic properties of H-terminated diamond in electrolyte solutions. J. Appl. Phys. 99, 33 711. (doi.10.1063/1.2171805)
47. Nebel, C. E., Rezek, B., Shin, D. & Watanabe, H. 2006c Surface electronic properties of H-terminated diamond in contact with adsorbates and electrolytes. Phys. Status Solidi A 203, 3273-3298. (doi:10.1002/pssa.200671401)
48. Nebel, C. E., Shin, D., Takeuchi, D., Yamamoto, T., Watanabe, H. & Nakamura, T. 2006d Photochemical attachment of amine linker molecules on hydrogen terminated diamond. Diamond Relat. Mater. 15, 1107-1112. (doi:10.1016/j.diamond.2005.11.041)
49. Nebel, C. E., Shin, D., Takeuchi, D., Yamamoto, T., Watanabe, H. & Nakamura, T. 2006e Alkene/diamond liquid/solid interface characterization using internal photoemission spectroscopy. Langmuir 22, 5645-5653. (doi:10.1021/la052685s)
50. Nesladek, M., Haenen, K. & Vanecek, M. 2003 In Thin-film diamond I, vol. 76 (eds C. E. Nebel & J. Ristein) Semiconductors and semimetals, p. 325. Amsterdam, The Netherlands: Elsevier.
51. Nichols, B. M., Butler, J. E., Russel Jr, J. N. & Hamers, R. J. 2005 Photochemical functionalization of hydrogen-terminated diamond surfaces: a structural and mechanistic study. J. Phys. Chem. B 109, 20 938-20 947. (doi:10.1021/jp0545389)
52. Okushi, H. 2001 High quality homoepitaxial CVD diamond for electronic devices. Diamond Relat. Mater. 10, 281-288. (doi:10.1016/S0925- 9635(00)00399-X)
53. Pinson, J. & Podvorica, F. 2005 Attachment of organic layers to conductive or semiconductive surfaces by reduction of diazonium salts. Chem. Soc. Rev. 34, 429-439. (doi:10.1039/b406228k)
54. Pleskov, Y. V., Evstefeeva, Y. E., Krotova, M. D., Elkin, V. V., Mazin, V. M., Mishuk, V. Y., Varnin, V. P. & Teremetskaya, I. G. 1998 Synthetic semiconductor diamond electrodes: the comparative study of the electrochemical behaviour of polycrystalline and single crystal boron-doped films. J. Electroanal. Chem. 455, 139-146. (doi:10.1016/S0022-0728(98)00175-2)
55. Poghossian, A., Cherstvy, A., Ingebrandt, S., Offenhaeusser, A. & Schoening, M. J. 2005 Possibilities and limitations of label-free detection of DNA hybridization with field-effect-based devices. Sens. Actuators, B 111-112, 470-480. (doi:10.1016/j.snb.2005.03.083)
56. Rasmussen, S. R., Larsen, M. R. & Rasmussen, S. E. 1991 Covalent immobilization of DNA onto polystyrene microwells - the molecules are only bound at the 5′ end. Anal. Biochem. 198, 138-142. (doi:10.1016/0003-2697(91)90518-X)
57. Rezek, B., Shin, D., Nakamura, T. & Nebel, C. E. 2006 Geometric properties of covalently bonded DNA on single-crystal line diamond. J. Am. Chem. Soc. 128, 3884-3885. (doi:10.1021/ja058181y)
58. Sander, C. 2000 Genomic medicine and the future of health care. Science 287, 1977-1978. (doi:10.1126/science.287.5460.1977)
59. Schwartz, P. V. 2001 Meniscus force nanografting: nanoscopic patterning of DNA. Langmuir 17, 5971-5977. (doi:10.1021/la001625d)
60. Sekaric, L., Parpia, J. M., Craighead, H. G., Feygelson, T., Houston, B. H. & Butler, J. E. 2002 Nanomechanical resonant structures in nanocrystalline diamond. Appl. Phys. Lett. 81, 4455-4457. (doi:10.1063/1.1526941)
61. Shin, D., Watanabe, H. & Nebel, C. E. 2005 Insulator-metal transition of intrinsic diamond. J. Am. Chem. Soc. 127, 11 236-11 237. (doi:10.1021/ja052834t)
62. Shin, D. C., Tokuda, N., Rezek, B. & Nebel, C. E. 2006 Periodically arranged benzene-linker molecules on boron-doped single-crystalline diamond films for DNA sensing. Electrochem. Commun. 8, 844-850. (doi:10.1016/j.elecom.2006.03.014)
63. Shirafuji, J. & Sugino, T. 1996 Electrical properties of diamond surfaces. Diamond Relat. Mater. 5, 706-713. (doi:10.1016/0925- 9635(95)00415-7)
64. Song, K. S., Degawa, M., Nakamura, Y., Kanazawa, H., Umezawa, H. & Kawarada, H. 2004 Surface-modified diamond field-effect transistors for enzyme-immobilized biosensors. Jpn J. Appl. Phys., Part 2 43, L814-L817. (doi:10.1143/JJAP.43.L814)
65. Sque, S. J., Jones, R. & Briddon, P. R. 2006 Structure, electronics, and interaction of hydrogen and oxygen on diamond surfaces. Phys. Rev. B 73, 085313. (doi:10.1103/PhysRevB.73.085313)
66. Srinivas, P. R., Kramer, B. S. & Srivastava, S. 2001 Trends in biomarker research for cancer detection. Lancet Oncol. 2, 698-704. (doi:10.1016/S1470-2045(01)00560-5)
67. Strother, T., Cai, W., Zhao, X. S., Hamers, R. J. & Smith, L. M. 2000 Synthesis and characterization of DNA-modified silicon (111) surfaces. J. Am. Chem. Soc. 122, 1205-1209. (doi:10.1021/ja9936161)
68. Swain, G. M. 2004 Electroanalytical applications of diamond electrodes. In Thin film diamond II, vol. 77 (eds C. E. Nebel & J. Ristein) Semiconductors and semimetals, p. 121. Amsterdam, The Netherlands; New York, NY: Elsevier; Academic Press.
69. Takahashi, K., Tanga, M., Takai, O. & Okamura, H. 2000 DNA bonding to diamond. Bio Ind. 17, 44-51.
70. Takahashi, K., Tanga, M., Takai, O. & Okamura, H. 2003 DNA preservation using diamond chips. Diamond Relat. Mater. 12, 572-576. (doi:10.1016/S0925-9635(03)00070-0)
71. Takeuchi, D., Yamanaka, S., Watanabe, H., Sawada, S., Ichinose, H., Okushi, H. & Kajimura, K. 1999 High quality homoepitaxial diamond thin film synthesis with high growth rate by a two-step growth method. Diamond Relat. Mater. 8, 1046-1049. (doi:10.1016/S0925-9635(99)00002-3)
72. Takeuchi, D., Kato, H., Ri, G. S., Yamada, T., Vinod, P. R., Hwang, D., Nebel, C. E., Okushi, H. & Yamasaki, S. 2005 Direct observation of negative electron affinity in hydrogen-terminated diamond surfaces. APL 86, 152 103.
73. Tang, L., Tsai, C., Gerberich, W. W., Kruckeberg, L. & Kania, D. R. 1995 Biocompatibility of chemical-vapor-deposited diamond. Biomaterials 16, 483-488. (doi:10.1016/0142-9612(95)98822-V)
74. 4-reactant-optimized high acoustic velocity CVD polydiamond. In Solid State Sensor, Actuator, and Microsystems Workshop Proceedings, Hilton Head Island, SC, pp. 61-62.
75. Wang, J., Butler, J. E., Feygelson, T. & Nguyen, C. T.-C. 2004 1.51-GHz polydiamond micromechanical disk resonantor with impedance mismatch isolating support. In Proc. 17th IEEE Micro Electro Mechanical Systems Conf., Maastrich, pp. 641-644. The Netherlands, Jan. 25-29
76. Wang, J., Firestone, M. A., Auciello, O. & Carlisle, J. A. 2004 Functionalization of ultrananocrystalline diamond films by electrochemical reduction of aryldiazonium salts. Langmuir 20, 11 450-11 456. (doi:10.1021/la048740z)
77. Watanabe, H., Takeuchi, D., Yamanaka, S., Okushi, H., Kajimura, K. & Sekiguchi, T. 1999 Homoepitaxial diamond film with an atomically flat surface over a large area. Diamond Relat. Mater. 8, 1272-1276. (doi:10.1016/S0925-9635(99)00126-0)
78. Williams, O. A., Daenen, M., D'Haen, J., Haenen, K., Maes, J., Moshchalkov, V. V., Nesladek, M. & Gruen, D. M. 2006 Comparison of the growth and properties of ultrananocrystalline diamond and nanocrystalline diamond. Diamond Relat. Mater. 15, 654-658. (doi:10.1016/j. diamond.2005.12.009)
79. Wulfkuhle, J. D., Liotta, L. A. & Petricoin, E. F. 2003 Proteomic applications for the early detection of cancer. Nat. Rev. Cancer 3, 267-275. (doi:10.1038/nrc1043)
80. Xu, S., Miller, S., Laibinis, P. E. & Liu, G. Y. 1999 Fabrication of nanometer scale patterns within self-assembled monolayers by nanografting. Langmuir 15, 7244-7251. (doi:10.1021/la9906727)
81. Yang, W. et al. 2002 DNA-modified nanocrystalline diamond thin-films as stable, biologically active substrates. Nat. Mater. 1, 253-257. (doi:10.1038/nmat779)
82. Yang, W., Butler, J. E., Russel Jr, J. N. & Hamers, R. J. 2004 Interfacial electrical properties of DNA-modified diamond thin films: intrinsic response and hybridization-induced field effects. Langmuir 20, 6778-6787. (doi:10.1021/la036460y)
83. Yang, J.-H., Song, K.-S., Kuga, S. & Kawarada, H. 2006 Characterization of direct immobilized probe DNA on partially functionalized diamond solution-gate field-effect transistors. Jpn J. Appl. Phys. 45, L1114-L1117. (doi:10.1143/JJAP.45.L1114)
84. Zhang, G.-J., Song, K. S., Nakamura, Y., Ueno, T., Funatsu, T., Ohdomari, I. & Kawarada, H. 2006 DNA micropatterning on polycrystalline diamond via one-step direct amination. Langmuir 22, 3728-3734. (doi:10.1021/la050883d)
85. Zhou, D. J., Sinniah, K., Abell, C. & Rayment, T. 2002 Use of atomic force microscopy for making addresses in DNA coatings. Langmuir 18, 8278-8281. (doi:10.1021/la0258547)