메뉴 건너뛰기




Volumn 44, Issue 8, 2007, Pages 773-788

Suitability of methods for species recognition in the Phialocephala fortinii-Acephala applanata species complex using DNA analysis

Author keywords

Dark septate root endophytes; DSE; Gene trees; Migration rates; Reproduction; Speciation; Species boundaries

Indexed keywords

ACEPHALA APPLANATA; ARTICLE; ASCOMYCETES; CONTROLLED STUDY; DNA DETERMINATION; DNA SEQUENCE; GENEALOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHIALOCEPHALA FORTINII; PHYLOGENY; PRIORITY JOURNAL; UNINDEXED SEQUENCE;

EID: 34249680236     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2006.12.008     Document Type: Article
Times cited : (55)

References (96)
  • 1
    • 0033668159 scopus 로고    scopus 로고
    • Distribution and molecular characterization of the root endophyte Phialocephala fortinii along an environmental gradient in the boreal forest of Alberta
    • Addy H.D., Hambleton S., and Currah R.S. Distribution and molecular characterization of the root endophyte Phialocephala fortinii along an environmental gradient in the boreal forest of Alberta. Mycol. Res. 104 (2000) 1213-1221
    • (2000) Mycol. Res. , vol.104 , pp. 1213-1221
    • Addy, H.D.1    Hambleton, S.2    Currah, R.S.3
  • 3
    • 0000847921 scopus 로고    scopus 로고
    • Indices of multilocus linkage disequilibrium
    • Agapow P.M., and Burt A. Indices of multilocus linkage disequilibrium. Mol. Ecol. Notes 1 (2001) 101-102
    • (2001) Mol. Ecol. Notes , vol.1 , pp. 101-102
    • Agapow, P.M.1    Burt, A.2
  • 4
    • 0029500651 scopus 로고    scopus 로고
    • The profusion of dark septate endophytic fungi in non-ectomycorrhizal fine roots of forest trees and shrubs
    • Ahlich K., and Sieber T.N. The profusion of dark septate endophytic fungi in non-ectomycorrhizal fine roots of forest trees and shrubs. New Phytol. 132 (1996) 259-270
    • (1996) New Phytol. , vol.132 , pp. 259-270
    • Ahlich, K.1    Sieber, T.N.2
  • 5
    • 34249727254 scopus 로고    scopus 로고
    • Ahlich-Schlegel, K., 1997. Vorkommen und Charakterisierung von dunklen, septierten Hyphomyceten (DSH) in Gehölzwurzeln. PhD thesis, Swiss Federal Institute of Technology, Zürich.
  • 6
    • 0141795437 scopus 로고    scopus 로고
    • Culturing and direct DNA extraction find different fungi from the same ericoid mycorrhizal roots
    • Allen T.R., Millar T., Berch S.M., and Berbee M.L. Culturing and direct DNA extraction find different fungi from the same ericoid mycorrhizal roots. New Phytol. 160 (2003) 255-272
    • (2003) New Phytol. , vol.160 , pp. 255-272
    • Allen, T.R.1    Millar, T.2    Berch, S.M.3    Berbee, M.L.4
  • 8
    • 33644851691 scopus 로고    scopus 로고
    • Ectomycorrhizal ecology under primary succession on coastal sand dunes: interactions involving Pinus contorta, suilloid fungi and deer
    • Ashkannejhad S., and Horton T.R. Ectomycorrhizal ecology under primary succession on coastal sand dunes: interactions involving Pinus contorta, suilloid fungi and deer. New Phytol. 169 (2006) 345-354
    • (2006) New Phytol. , vol.169 , pp. 345-354
    • Ashkannejhad, S.1    Horton, T.R.2
  • 9
    • 0346094469 scopus 로고    scopus 로고
    • Phylogenetic analysis of globally distributed Mycosphaerella graminicola populations based on three DNA sequence loci
    • Banke S., Peschon A., and McDonald B.A. Phylogenetic analysis of globally distributed Mycosphaerella graminicola populations based on three DNA sequence loci. Fung. Genet. Biol. 41 (2004) 226-238
    • (2004) Fung. Genet. Biol. , vol.41 , pp. 226-238
    • Banke, S.1    Peschon, A.2    McDonald, B.A.3
  • 11
    • 0001949211 scopus 로고    scopus 로고
    • Fungal species in practice: identifying species units in fungi
    • Claridge M., Dawah H., and Wilson M. (Eds), Chapmann & Hall, London
    • Brasier C.M. Fungal species in practice: identifying species units in fungi. In: Claridge M., Dawah H., and Wilson M. (Eds). Species: The Units of Biodiversity (1997), Chapmann & Hall, London 135-170
    • (1997) Species: The Units of Biodiversity , pp. 135-170
    • Brasier, C.M.1
  • 15
    • 0031213585 scopus 로고    scopus 로고
    • Molecular markers reveal differentiation among isolates of Coccidioides immitis from California, Arizona and Texas
    • Burt A., Dechairo B.M., Koenig G.L., Carter D.A., White T.J., and Taylor J.W. Molecular markers reveal differentiation among isolates of Coccidioides immitis from California, Arizona and Texas. Mol. Ecol. 6 (1997) 781-786
    • (1997) Mol. Ecol. , vol.6 , pp. 781-786
    • Burt, A.1    Dechairo, B.M.2    Koenig, G.L.3    Carter, D.A.4    White, T.J.5    Taylor, J.W.6
  • 16
    • 0035573070 scopus 로고    scopus 로고
    • Amplified single-nucleotide polymorphisms and a (GA)(n) microsatellite marker reveal genetic differentiation between populations of Histoplasma capsulatum from the Americas
    • Carter D.A., Taylor J.W., Dechairo B., Burt S., Koenig G.L., and White T.J. Amplified single-nucleotide polymorphisms and a (GA)(n) microsatellite marker reveal genetic differentiation between populations of Histoplasma capsulatum from the Americas. Fung. Genet. Biol. 34 (2001) 37-48
    • (2001) Fung. Genet. Biol. , vol.34 , pp. 37-48
    • Carter, D.A.1    Taylor, J.W.2    Dechairo, B.3    Burt, S.4    Koenig, G.L.5    White, T.J.6
  • 17
    • 0033771358 scopus 로고    scopus 로고
    • TCS: a computer program to estimate gene genealogies
    • Clement M., Posada D., and Crandall K.A. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9 (2000) 1657-1659
    • (2000) Mol. Ecol. , vol.9 , pp. 1657-1659
    • Clement, M.1    Posada, D.2    Crandall, K.A.3
  • 18
    • 4644311423 scopus 로고    scopus 로고
    • Arbuscular mycorrhizal fungi (Glomeromycota) harbour ancient fungal tubulin genes that resemble those of the chytrids (Chytridiomycota)
    • Corradi N., Hijri M., Fumagalli L., and Sanders I.R. Arbuscular mycorrhizal fungi (Glomeromycota) harbour ancient fungal tubulin genes that resemble those of the chytrids (Chytridiomycota). Fung. Genet. Biol. 41 (2004) 1037-1045
    • (2004) Fung. Genet. Biol. , vol.41 , pp. 1037-1045
    • Corradi, N.1    Hijri, M.2    Fumagalli, L.3    Sanders, I.R.4
  • 19
    • 0036321381 scopus 로고    scopus 로고
    • A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea
    • Couch B.C., and Kohn L.M. A multilocus gene genealogy concordant with host preference indicates segregation of a new species, Magnaporthe oryzae, from M. grisea. Mycologia 94 (2002) 683-693
    • (2002) Mycologia , vol.94 , pp. 683-693
    • Couch, B.C.1    Kohn, L.M.2
  • 20
    • 0027285731 scopus 로고
    • Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction
    • Crandall K.A., and Templeton A.R. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134 (1993) 959-969
    • (1993) Genetics , vol.134 , pp. 959-969
    • Crandall, K.A.1    Templeton, A.R.2
  • 21
    • 0030816742 scopus 로고    scopus 로고
    • Can tree incongruence tests predict when data should be combined?
    • Cunningham C.W. Can tree incongruence tests predict when data should be combined?. Mol. Biol. Evol. 14 (1997) 733-740
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 733-740
    • Cunningham, C.W.1
  • 22
    • 0031224810 scopus 로고    scopus 로고
    • Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods
    • Cunningham C.W. Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods. Syst. Biol. 46 (1997) 464-478
    • (1997) Syst. Biol. , vol.46 , pp. 464-478
    • Cunningham, C.W.1
  • 24
    • 0037408289 scopus 로고    scopus 로고
    • Using AFLP to resolve phylogenetic relationships in a morphologically diversified plant species complex when nuclear and chloroplast sequences fail to reveal variability
    • Després L., Gielly L., Redoutet B., and Taberlet P. Using AFLP to resolve phylogenetic relationships in a morphologically diversified plant species complex when nuclear and chloroplast sequences fail to reveal variability. Mol. Phylogenet. Evol. 27 (2003) 185-196
    • (2003) Mol. Phylogenet. Evol. , vol.27 , pp. 185-196
    • Després, L.1    Gielly, L.2    Redoutet, B.3    Taberlet, P.4
  • 25
    • 0344863884 scopus 로고    scopus 로고
    • A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora
    • Dettman J.R., Jacobson D.J., and Taylor J.W. A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora. Evolution 57 (2003) 2703-2720
    • (2003) Evolution , vol.57 , pp. 2703-2720
    • Dettman, J.R.1    Jacobson, D.J.2    Taylor, J.W.3
  • 26
    • 0345295170 scopus 로고    scopus 로고
    • Reproductive isolation and phylogenetic divergence in Neurospora: comparing methods of species recognition in a model eukaryote
    • Dettman J.R., Jacobson D.J., Turner E., Pringle A., and Taylor J.W. Reproductive isolation and phylogenetic divergence in Neurospora: comparing methods of species recognition in a model eukaryote. Evolution 57 (2003) 2721-2741
    • (2003) Evolution , vol.57 , pp. 2721-2741
    • Dettman, J.R.1    Jacobson, D.J.2    Turner, E.3    Pringle, A.4    Taylor, J.W.5
  • 27
    • 0034655665 scopus 로고    scopus 로고
    • Total evidence: molecules, morphology, and the phylogenetics of cichlid fishes
    • Farias I.P., Orti G., and Meyer A. Total evidence: molecules, morphology, and the phylogenetics of cichlid fishes. J. Exp. Zool. 288 (2000) 76-92
    • (2000) J. Exp. Zool. , vol.288 , pp. 76-92
    • Farias, I.P.1    Orti, G.2    Meyer, A.3
  • 29
    • 0036067301 scopus 로고    scopus 로고
    • Molecular and phenotypic description of Coccidioides posadasii sp. nov., previously recognized as the non-California population of Coccidioides immitis
    • Fisher M.C., Koenig G.L., White T.J., and Taylor J.W. Molecular and phenotypic description of Coccidioides posadasii sp. nov., previously recognized as the non-California population of Coccidioides immitis. Mycologia 94 (2002) 73-84
    • (2002) Mycologia , vol.94 , pp. 73-84
    • Fisher, M.C.1    Koenig, G.L.2    White, T.J.3    Taylor, J.W.4
  • 30
    • 0000642728 scopus 로고
    • A consideration of epistemology in systematic biology, with special reference to species
    • Frost D.R., and Kluge A.G. A consideration of epistemology in systematic biology, with special reference to species. Cladistics 10 (1994) 259-294
    • (1994) Cladistics , vol.10 , pp. 259-294
    • Frost, D.R.1    Kluge, A.G.2
  • 31
    • 14844313275 scopus 로고    scopus 로고
    • Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree
    • Gadagkar S.R., Rosenberg M.S., and Kumar S. Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree. J. Exp. Zool. B 304B (2005) 64-74
    • (2005) J. Exp. Zool. B , vol.304 B , pp. 64-74
    • Gadagkar, S.R.1    Rosenberg, M.S.2    Kumar, S.3
  • 32
    • 0031940433 scopus 로고    scopus 로고
    • Cryptic speciation and recombination in the aflatoxin-producing fungus Aspergillus flavus
    • Geiser D.M., Pitt J.I., and Taylor J.W. Cryptic speciation and recombination in the aflatoxin-producing fungus Aspergillus flavus. Proc. Natl. Acad. Sci. USA 95 (1998) 388-393
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 388-393
    • Geiser, D.M.1    Pitt, J.I.2    Taylor, J.W.3
  • 33
    • 0035076436 scopus 로고    scopus 로고
    • The use of amplified fragment length polymorphism in determining species trees at fine taxonomic levels: analysis of a medically important snake, Trimeresurus albolabris
    • Giannasi N., Thorpe R.S., and Malhotra A. The use of amplified fragment length polymorphism in determining species trees at fine taxonomic levels: analysis of a medically important snake, Trimeresurus albolabris. Mol. Ecol. 10 (2001) 419-426
    • (2001) Mol. Ecol. , vol.10 , pp. 419-426
    • Giannasi, N.1    Thorpe, R.S.2    Malhotra, A.3
  • 34
    • 0032850381 scopus 로고    scopus 로고
    • Two sibling species of the Botrytis cinerea complex, transposa and vacuma, are found in sympatry on numerous host plants
    • Giraud T., Fortini D., Levis C., Lamarque C., Leroux P., LoBuglio K., and Brygoo Y. Two sibling species of the Botrytis cinerea complex, transposa and vacuma, are found in sympatry on numerous host plants. Phytopathology 89 (1999) 967-973
    • (1999) Phytopathology , vol.89 , pp. 967-973
    • Giraud, T.1    Fortini, D.2    Levis, C.3    Lamarque, C.4    Leroux, P.5    LoBuglio, K.6    Brygoo, Y.7
  • 35
    • 0030734126 scopus 로고    scopus 로고
    • RFLP markers show genetic recombination in Botryotinia fuckeliana (Botrytis cinerea) and transposable elements reveal two sympatric species
    • Giraud T., Fortini D., Levis C., Leroux P., and Brygoo Y. RFLP markers show genetic recombination in Botryotinia fuckeliana (Botrytis cinerea) and transposable elements reveal two sympatric species. Mol. Biol. Evol. 14 (1997) 1177-1185
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1177-1185
    • Giraud, T.1    Fortini, D.2    Levis, C.3    Leroux, P.4    Brygoo, Y.5
  • 36
    • 34249705889 scopus 로고    scopus 로고
    • Grünig, C.R., 2004. Population biology of the tree-root endophyte Phialocephala fortinii. PhD thesis, Swiss Federal Institute of Technology, Zürich. Available from: .
  • 37
    • 33646366637 scopus 로고    scopus 로고
    • Population genetic analysis of Phialocephala fortinii s.l. and Acephala applanata in two undisturbed forests in Switzerland and evidence for new cryptic species
    • Grünig C.R., Duò A., and Sieber T.N. Population genetic analysis of Phialocephala fortinii s.l. and Acephala applanata in two undisturbed forests in Switzerland and evidence for new cryptic species. Fung. Genet. Biol. 43 (2006) 410-421
    • (2006) Fung. Genet. Biol. , vol.43 , pp. 410-421
    • Grünig, C.R.1    Duò, A.2    Sieber, T.N.3
  • 38
    • 1242299560 scopus 로고    scopus 로고
    • Development of single-copy RFLP markers for population genetic studies of Phialocephala fortinii and closely related taxa
    • Grünig C.R., Linde C.C., Sieber T.N., and Rogers S.O. Development of single-copy RFLP markers for population genetic studies of Phialocephala fortinii and closely related taxa. Mycol. Res. 107 (2003) 1332-1341
    • (2003) Mycol. Res. , vol.107 , pp. 1332-1341
    • Grünig, C.R.1    Linde, C.C.2    Sieber, T.N.3    Rogers, S.O.4
  • 39
    • 2942536292 scopus 로고    scopus 로고
    • Evidence for subdivision of the root-endophyte Phialocephala fortinii into cryptic species and recombination within species
    • Grünig C.R., McDonald B.A., Sieber T.N., Rogers S.O., and Holdenrieder O. Evidence for subdivision of the root-endophyte Phialocephala fortinii into cryptic species and recombination within species. Fung. Genet. Biol. 41 (2004) 676-687
    • (2004) Fung. Genet. Biol. , vol.41 , pp. 676-687
    • Grünig, C.R.1    McDonald, B.A.2    Sieber, T.N.3    Rogers, S.O.4    Holdenrieder, O.5
  • 40
    • 25444501279 scopus 로고    scopus 로고
    • Molecular and phenotypic description of the widespread root symbiont Acephala applanata gen. et sp. nov., formerly known as dark septate endophyte Type 1
    • Grünig C.R., and Sieber T.N. Molecular and phenotypic description of the widespread root symbiont Acephala applanata gen. et sp. nov., formerly known as dark septate endophyte Type 1. Mycologia 97 (2005) 628-640
    • (2005) Mycologia , vol.97 , pp. 628-640
    • Grünig, C.R.1    Sieber, T.N.2
  • 41
    • 0242585433 scopus 로고    scopus 로고
    • Genetic variability among strains of Phialocephala fortinii and phylogenetic analysis of the genus Phialocephala based on rDNA ITS sequence comparisons
    • Grünig C.R., Sieber T.N., Rogers S.O., and Holdenrieder O. Genetic variability among strains of Phialocephala fortinii and phylogenetic analysis of the genus Phialocephala based on rDNA ITS sequence comparisons. Can. J. Bot. 80 (2002) 1239-1249
    • (2002) Can. J. Bot. , vol.80 , pp. 1239-1249
    • Grünig, C.R.1    Sieber, T.N.2    Rogers, S.O.3    Holdenrieder, O.4
  • 42
    • 0001795139 scopus 로고    scopus 로고
    • Defining species in the fungi
    • Worrall J.J. (Ed), Kluwer Academic Publishers, Dordrecht
    • Harrington T.C., and Rizzo D.M. Defining species in the fungi. In: Worrall J.J. (Ed). Structure and Dynamics of Fungal Populations (1999), Kluwer Academic Publishers, Dordrecht 43-71
    • (1999) Structure and Dynamics of Fungal Populations , pp. 43-71
    • Harrington, T.C.1    Rizzo, D.M.2
  • 44
    • 0035400717 scopus 로고    scopus 로고
    • The mind of the species problem
    • Hey J. The mind of the species problem. Trends Ecol. Evol. 16 (2001) 326-329
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 326-329
    • Hey, J.1
  • 45
    • 3142714474 scopus 로고    scopus 로고
    • Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
    • Hey J., and Nielsen R. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167 (2004) 747-760
    • (2004) Genetics , vol.167 , pp. 747-760
    • Hey, J.1    Nielsen, R.2
  • 46
    • 0031035812 scopus 로고    scopus 로고
    • A coalescent estimator of the population recombination rate
    • Hey J., and Wakeley J. A coalescent estimator of the population recombination rate. Genetics 145 (1997)
    • (1997) Genetics , vol.145
    • Hey, J.1    Wakeley, J.2
  • 47
    • 0000013908 scopus 로고    scopus 로고
    • The ideal species concept - and we can't get it
    • Claridge M., Dawah H., and Wilson M. (Eds), Chapmann & Hall, London
    • Hull D. The ideal species concept - and we can't get it. In: Claridge M., Dawah H., and Wilson M. (Eds). Species: The Units of Biodiversity (1997), Chapmann & Hall, London 357-380
    • (1997) Species: The Units of Biodiversity , pp. 357-380
    • Hull, D.1
  • 48
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson D.H., and Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23 (2006) 254-267
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 49
    • 0031786145 scopus 로고    scopus 로고
    • Dark septate endophytes: a review of facultative biotrophic root-colonizing fungi
    • Jumpponen A., and Trappe J.M. Dark septate endophytes: a review of facultative biotrophic root-colonizing fungi. New Phytol. 140 (1998) 295-310
    • (1998) New Phytol. , vol.140 , pp. 295-310
    • Jumpponen, A.1    Trappe, J.M.2
  • 50
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 (1980) 111-120
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 51
    • 0032029052 scopus 로고    scopus 로고
    • Random association among alleles in clonal populations of Sclerotinia sclerotiorum
    • Kohli Y., and Kohn L.M. Random association among alleles in clonal populations of Sclerotinia sclerotiorum. Fung. Genet. Biol. 23 (1998) 139-149
    • (1998) Fung. Genet. Biol. , vol.23 , pp. 139-149
    • Kohli, Y.1    Kohn, L.M.2
  • 52
    • 24944554890 scopus 로고    scopus 로고
    • Mechanisms of fungal speciation
    • Kohn L.M. Mechanisms of fungal speciation. Annu. Rev. Pythopathol. 43 (2005) 279-308
    • (2005) Annu. Rev. Pythopathol. , vol.43 , pp. 279-308
    • Kohn, L.M.1
  • 53
    • 0034942559 scopus 로고    scopus 로고
    • Gene genealogies, cryptic species, and molecular evolution in the human pathogen Coccidioides immitis and relatives (Ascomycota, Onygenales)
    • Koufopanou V., Burt A., Szaro T., and Taylor J.W. Gene genealogies, cryptic species, and molecular evolution in the human pathogen Coccidioides immitis and relatives (Ascomycota, Onygenales). Mol. Biol. Evol. 18 (2001) 1246-1258
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1246-1258
    • Koufopanou, V.1    Burt, A.2    Szaro, T.3    Taylor, J.W.4
  • 54
    • 0030995435 scopus 로고    scopus 로고
    • Concordance of gene genealogies reveals reproductive isolation in the pathogenic fungus Coccidioides immitis
    • Koufopanou V., Burt A., and Taylor J.W. Concordance of gene genealogies reveals reproductive isolation in the pathogenic fungus Coccidioides immitis. Proc. Natl. Acad. Sci. USA 94 (1997) 5478-5482
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 5478-5482
    • Koufopanou, V.1    Burt, A.2    Taylor, J.W.3
  • 55
    • 0036723575 scopus 로고    scopus 로고
    • Population structure of Mycosphaerella graminicola: from lesions to continents
    • Linde C.C., Zhan J., and McDonald B.A. Population structure of Mycosphaerella graminicola: from lesions to continents. Phytopathology 92 (2002) 946-955
    • (2002) Phytopathology , vol.92 , pp. 946-955
    • Linde, C.C.1    Zhan, J.2    McDonald, B.A.3
  • 56
    • 0033084948 scopus 로고    scopus 로고
    • Phylogenetic assessment of molecular and morphological data for eutherian mammals
    • Liu F.G.R., and Miyamoto M.M. Phylogenetic assessment of molecular and morphological data for eutherian mammals. Syst. Biol. 48 (1999) 54-64
    • (1999) Syst. Biol. , vol.48 , pp. 54-64
    • Liu, F.G.R.1    Miyamoto, M.M.2
  • 57
    • 0030253237 scopus 로고    scopus 로고
    • Phylogenetic origins of the asexual mycorrhizal symbiont Cenococcum geophilum Fr. and other mycorrhizal fungi among the ascomycetess
    • LoBuglio K.F., Berbee M.L., and Taylor J.W. Phylogenetic origins of the asexual mycorrhizal symbiont Cenococcum geophilum Fr. and other mycorrhizal fungi among the ascomycetess. Mol. Phylogenet. Evol. 6 (1996) 287-294
    • (1996) Mol. Phylogenet. Evol. , vol.6 , pp. 287-294
    • LoBuglio, K.F.1    Berbee, M.L.2    Taylor, J.W.3
  • 58
    • 0025289181 scopus 로고
    • The analysis of population survey data on DNA sequence variation
    • Lynch M., and Crease T.J. The analysis of population survey data on DNA sequence variation. Mol. Biol. Evol. 7 (1990) 377-394
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 377-394
    • Lynch, M.1    Crease, T.J.2
  • 59
    • 0000216233 scopus 로고    scopus 로고
    • A hierarchy of species concepts: the denouement in the saga of the species problem
    • Claridge M., Dawah H., and Wilson M. (Eds), Chapmann & Hall, London
    • Mayden R. A hierarchy of species concepts: the denouement in the saga of the species problem. In: Claridge M., Dawah H., and Wilson M. (Eds). Species: The Units of Biodiversity (1997), Chapmann & Hall, London 381-424
    • (1997) Species: The Units of Biodiversity , pp. 381-424
    • Mayden, R.1
  • 60
    • 0032792847 scopus 로고    scopus 로고
    • Genetic structure of Rhynchosporium secalis in Australia
    • McDonald B.A., Zhan J., and Burdon J.J. Genetic structure of Rhynchosporium secalis in Australia. Phytopathology 89 (1999) 639-645
    • (1999) Phytopathology , vol.89 , pp. 639-645
    • McDonald, B.A.1    Zhan, J.2    Burdon, J.J.3
  • 61
    • 4544240280 scopus 로고    scopus 로고
    • Ecology and molecular characterization of dark septate fungi from roots, living stems, coarse and fine woody debris
    • Menkis A., Allmer J., Vasiliauskas R., Lygis V., Stenlid J., and Finlay R. Ecology and molecular characterization of dark septate fungi from roots, living stems, coarse and fine woody debris. Mycol. Res. 108 (2004) 965-973
    • (2004) Mycol. Res. , vol.108 , pp. 965-973
    • Menkis, A.1    Allmer, J.2    Vasiliauskas, R.3    Lygis, V.4    Stenlid, J.5    Finlay, R.6
  • 62
    • 0029803295 scopus 로고    scopus 로고
    • Recombination and the multilocus structure of fungal populations
    • Milgroom M.G. Recombination and the multilocus structure of fungal populations. Annu. Rev. Pythopathol. 34 (1996) 457-477
    • (1996) Annu. Rev. Pythopathol. , vol.34 , pp. 457-477
    • Milgroom, M.G.1
  • 63
    • 21544463166 scopus 로고    scopus 로고
    • Fungal evolution and speciation
    • Natvig D.O., and May G. Fungal evolution and speciation. J. Genet. 75 (1996) 441-452
    • (1996) J. Genet. , vol.75 , pp. 441-452
    • Natvig, D.O.1    May, G.2
  • 64
    • 0034608827 scopus 로고    scopus 로고
    • Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab
    • O'Donnell K., Kistler H.C., Tacke B.K., and Casper H.H. Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab. Proc. Natl. Acad. Sci. USA 97 (2000) 7905-7910
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 7905-7910
    • O'Donnell, K.1    Kistler, H.C.2    Tacke, B.K.3    Casper, H.H.4
  • 65
    • 2342521420 scopus 로고    scopus 로고
    • Genealogical concordance between the mating type locus and seven other nuclear genes supports formal recognition of nine phylogenetically distinct species within the Fusarium graminearum clade
    • O'Donnell K., Ward T.J., Geiser D.M., Kistler H.C., and Aoki T. Genealogical concordance between the mating type locus and seven other nuclear genes supports formal recognition of nine phylogenetically distinct species within the Fusarium graminearum clade. Fung. Genet. Biol. 41 (2004) 600-623
    • (2004) Fung. Genet. Biol. , vol.41 , pp. 600-623
    • O'Donnell, K.1    Ward, T.J.2    Geiser, D.M.3    Kistler, H.C.4    Aoki, T.5
  • 66
    • 0034919686 scopus 로고    scopus 로고
    • Species boundaries and genetic diversity among Hawaiian crickets of the genus Laupala identified using amplified fragment length polymorphism
    • Parsons Y.M., and Shaw K.L. Species boundaries and genetic diversity among Hawaiian crickets of the genus Laupala identified using amplified fragment length polymorphism. Mol. Ecol. 10 (2001) 1765-1772
    • (2001) Mol. Ecol. , vol.10 , pp. 1765-1772
    • Parsons, Y.M.1    Shaw, K.L.2
  • 67
    • 0032959889 scopus 로고    scopus 로고
    • Species and speciation in mushrooms
    • Petersen R.H., and Hughes K.W. Species and speciation in mushrooms. Bioscience 49 (1999) 440-452
    • (1999) Bioscience , vol.49 , pp. 440-452
    • Petersen, R.H.1    Hughes, K.W.2
  • 68
    • 3543117992 scopus 로고    scopus 로고
    • Patterns of genetic variation in Phialocephala fortinii across a broad latitudinal transect in Canada
    • Piercey M.M., Graham S.W., and Currah R.S. Patterns of genetic variation in Phialocephala fortinii across a broad latitudinal transect in Canada. Mycol. Res. 108 (2004) 955-964
    • (2004) Mycol. Res. , vol.108 , pp. 955-964
    • Piercey, M.M.1    Graham, S.W.2    Currah, R.S.3
  • 69
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 70
    • 0035139147 scopus 로고    scopus 로고
    • Intraspecific gene genealogies: trees grafting into networks
    • Posada D., and Crandall K.A. Intraspecific gene genealogies: trees grafting into networks. Trends Ecol. Evol. 16 (2001) 37-45
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 37-45
    • Posada, D.1    Crandall, K.A.2
  • 71
    • 25644460037 scopus 로고    scopus 로고
    • Cryptic speciation in the cosmopolitan and clonal human pathogenic fungus Aspergillus fumigatus
    • Pringle A., Baker D.M., Platt J.L., Wares J.P., Latge J.P., and Taylor J.W. Cryptic speciation in the cosmopolitan and clonal human pathogenic fungus Aspergillus fumigatus. Evolution 59 (2005) 1886-1899
    • (2005) Evolution , vol.59 , pp. 1886-1899
    • Pringle, A.1    Baker, D.M.2    Platt, J.L.3    Wares, J.P.4    Latge, J.P.5    Taylor, J.W.6
  • 72
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard J.K., Stephens M., and Donnelly P. Inference of population structure using multilocus genotype data. Genetics 155 (2000) 945-959
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 73
    • 33645895583 scopus 로고    scopus 로고
    • Monitoring the spatial and temporal dynamics of a community of the tree-root endophyte Phialocephala fortinii s.l.
    • Queloz V., Grünig C.R., Sieber T.N., and Holdenrieder O. Monitoring the spatial and temporal dynamics of a community of the tree-root endophyte Phialocephala fortinii s.l. New Phytol. 168 (2005) 651-660
    • (2005) New Phytol. , vol.168 , pp. 651-660
    • Queloz, V.1    Grünig, C.R.2    Sieber, T.N.3    Holdenrieder, O.4
  • 74
    • 0030039312 scopus 로고    scopus 로고
    • Homology among RAPD fragments in interspecific comparisons
    • Rieseberg L.H. Homology among RAPD fragments in interspecific comparisons. Mol. Ecol. 5 (1996) 99-105
    • (1996) Mol. Ecol. , vol.5 , pp. 99-105
    • Rieseberg, L.H.1
  • 75
    • 0036515730 scopus 로고    scopus 로고
    • The probability of topological concordance of gene trees and species trees
    • Rosenberg N.A. The probability of topological concordance of gene trees and species trees. Theor. Popul. Biol. 61 (2002) 225-247
    • (2002) Theor. Popul. Biol. , vol.61 , pp. 225-247
    • Rosenberg, N.A.1
  • 76
    • 0042697667 scopus 로고    scopus 로고
    • The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model
    • Rosenberg N.A. The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model. Evolution 57 (2003) 1465-1477
    • (2003) Evolution , vol.57 , pp. 1465-1477
    • Rosenberg, N.A.1
  • 77
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J., Sanchez-DelBarrio J.C., Messeguer X., and Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 78
    • 0033867824 scopus 로고    scopus 로고
    • The genetic structure of field populations of Rhynchosporium secalis from three continents suggests moderate gene flow and regular recombination
    • Salamati S., Zhan J., Burdon J.J., and McDonald B.A. The genetic structure of field populations of Rhynchosporium secalis from three continents suggests moderate gene flow and regular recombination. Phytopathology 90 (2000) 901-908
    • (2000) Phytopathology , vol.90 , pp. 901-908
    • Salamati, S.1    Zhan, J.2    Burdon, J.J.3    McDonald, B.A.4
  • 79
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt H.A., Strimmer K., Vingron M., and von Haeseler A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18 (2002)
    • (2002) Bioinformatics , vol.18
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 80
    • 34249703577 scopus 로고    scopus 로고
    • Schneider, S., Roessli, D., Excoffier, L., 2000. Arlequin: A software for population genetic analysis. Version 2.001. Genetics and Biometry Lab, Dept. of Anthropology, University of Geneva, Switzerland.
  • 81
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of Log-likelihoods with applications to phylogenetic inference
    • Shimodaira H., and Hasegawa M. Multiple comparisons of Log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999) 1114-1116
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 82
    • 0000265227 scopus 로고    scopus 로고
    • Fungal root endophytes
    • Waisel Y., Eshel A., and Kafkafi U. (Eds), Marcel Dekker, New York Basel
    • Sieber T.N. Fungal root endophytes. In: Waisel Y., Eshel A., and Kafkafi U. (Eds). Plant Roots: The Hidden Half (2002), Marcel Dekker, New York Basel 887-917
    • (2002) Plant Roots: The Hidden Half , pp. 887-917
    • Sieber, T.N.1
  • 83
    • 34249732122 scopus 로고    scopus 로고
    • Biodiversity of fungal root-endophyte communities and populations in particular of the dark septate endophyte Phialocephala fortinii
    • Schulz B., Boyle C., and Sieber T.N. (Eds), Springer, Berlin
    • Sieber T.N., and Grünig C.R. Biodiversity of fungal root-endophyte communities and populations in particular of the dark septate endophyte Phialocephala fortinii. In: Schulz B., Boyle C., and Sieber T.N. (Eds). Microbial Root Endophytes (2006), Springer, Berlin 107-132
    • (2006) Microbial Root Endophytes , pp. 107-132
    • Sieber, T.N.1    Grünig, C.R.2
  • 84
    • 0027042707 scopus 로고
    • Characterization of sterile endophytic fungi from the mycorrhizae of subalpine plants
    • Stoyke G., Egger K.N., and Currah R.S. Characterization of sterile endophytic fungi from the mycorrhizae of subalpine plants. Can. J. Bot. 70 (1992) 2009-2016
    • (1992) Can. J. Bot. , vol.70 , pp. 2009-2016
    • Stoyke, G.1    Egger, K.N.2    Currah, R.S.3
  • 85
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K., and Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10 (1993) 512-526
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 86
    • 0842331071 scopus 로고    scopus 로고
    • Molecular phylogeny of Zygomycota based on EF-1 alpha and RPB1 sequences: limitations and utility of alternative markers to rDNA
    • Tanabe Y., Saikawa M., Watanabe M.M., and Sugiyama J. Molecular phylogeny of Zygomycota based on EF-1 alpha and RPB1 sequences: limitations and utility of alternative markers to rDNA. Mol. Phylogenet. Evol. 30 (2004) 438-449
    • (2004) Mol. Phylogenet. Evol. , vol.30 , pp. 438-449
    • Tanabe, Y.1    Saikawa, M.2    Watanabe, M.M.3    Sugiyama, J.4
  • 87
    • 0032693223 scopus 로고    scopus 로고
    • The evolution of asexual fungi: reproduction, speciation and classification
    • Taylor J.W., Jacobson D.J., and Fisher M.C. The evolution of asexual fungi: reproduction, speciation and classification. Annu. Rev. Pythopathol. 37 (1999) 197-246
    • (1999) Annu. Rev. Pythopathol. , vol.37 , pp. 197-246
    • Taylor, J.W.1    Jacobson, D.J.2    Fisher, M.C.3
  • 89
    • 0002883117 scopus 로고
    • Mechanisms of speciation - a population genetic approach
    • Templeton A.R. Mechanisms of speciation - a population genetic approach. Annu. Rev. Ecol. Syst. 12 (1981) 23-48
    • (1981) Annu. Rev. Ecol. Syst. , vol.12 , pp. 23-48
    • Templeton, A.R.1
  • 90
    • 0028726126 scopus 로고
    • The role of molecular genetics in speciation studies
    • Schierwater B., Streit B., Wagner G.P., and DeSalle R. (Eds), Birkhäuser, Basel
    • Templeton A.R. The role of molecular genetics in speciation studies. In: Schierwater B., Streit B., Wagner G.P., and DeSalle R. (Eds). Molecular Ecology and Evolution: Approaches and Applications (1994), Birkhäuser, Basel 455-477
    • (1994) Molecular Ecology and Evolution: Approaches and Applications , pp. 455-477
    • Templeton, A.R.1
  • 91
    • 0026662698 scopus 로고
    • A cladistic-analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA-sequence data. III. Cladogram estimation
    • Templeton A.R., Crandall K.A., and Sing C.F. A cladistic-analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA-sequence data. III. Cladogram estimation. Genetics 132 (1992) 619-633
    • (1992) Genetics , vol.132 , pp. 619-633
    • Templeton, A.R.1    Crandall, K.A.2    Sing, C.F.3
  • 93
    • 0017481191 scopus 로고
    • Is the most frequent allele the oldest?
    • Watterson G.A., and Guess H.A. Is the most frequent allele the oldest?. Theor. Popul. Biol. 11 (1977) 141-160
    • (1977) Theor. Popul. Biol. , vol.11 , pp. 141-160
    • Watterson, G.A.1    Guess, H.A.2
  • 95
    • 3042803766 scopus 로고    scopus 로고
    • What is speciation and how should we study it?
    • Wiens J.J. What is speciation and how should we study it?. Am. Nat. 163 (2004) 914-923
    • (2004) Am. Nat. , vol.163 , pp. 914-923
    • Wiens, J.J.1
  • 96
    • 0031943518 scopus 로고    scopus 로고
    • PCR markers distinguish Plantago major subspecies
    • Wolff K., and Morgan-Richards M. PCR markers distinguish Plantago major subspecies. Theor. Appl. Genet. 96 (1998) 282-296
    • (1998) Theor. Appl. Genet. , vol.96 , pp. 282-296
    • Wolff, K.1    Morgan-Richards, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.