Ecology and molecular characterization of dark septate fungi from roots, living stems, coarse and fine woody debris

Mycological Research

Volumn 108, Issue 8, 2004, Pages 965-973

  Menkis, Audrius ^a,b   Allmer, Johan ^b   Vasiliauskas, Rimvydas ^b   Lygis, Vaidotas ^a   Stenlid, Jan ^b   Finlay, Roger ^b  

^a INSTITUTE OF AGRICULTURE   (Lithuania)

^b SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ECOLOGY; FUNGUS; MOLECULAR ANALYSIS; ROOT SYSTEM; STEM; WOODY DEBRIS;

BALTIC STATES; EURASIA; EUROPE; LITHUANIA; NORTHERN EUROPE; SCANDINAVIA; SWEDEN;

ABIES; BETULA; BETULA PENDULA; CONIFEROPHYTA; DIMORPHOSPORA; FUNGI; PHIALOCEPHALA; PHIALOCEPHALA DIMORPHOSPORA; PHIALOCEPHALA FORTINII; PHIALOCEPHALA SP. 18; PHIALOCEPHALA SP. 35; PHIALOCEPHALA SP. 6; PICEA; PICEA ABIES;

EID: 4544240280     PISSN: 09537562     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0953756204000668     Document Type: Article

References (53)

1. Addy, H. D., Hambleton, S. & Currah, R. S. (2000) Distribution and molecular characterization of the root endophyte Phialocephala fortinii along an environmental gradient in the boreal forest of Alberta. Mycological Research 104: 1213-1221.
2. Ahlich, K., Rigling, D., Holdenrieder, O. & Sieber, T. N. (1998) Dark septate hyphomycetes in Swiss conifer forest soils surveyed using Norway-spruce seedlings as bait. Soil Biology anil Biochemistry 30: 1069-1075.
3. Ahlich, K. & Sieber, T. N. (1996) The profusion of dark septate endophytic fungi in non-ectomycorrhizal fine roots of forest trees and shrubs. New Phytologist 132: 259-270.
4. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 3389-3402.
5. Anagnost, S. E., Mark, R. E. & Hanna, R. B. (2000) Utilization of soft-rot cavity orientation for the determination of micofibril angle. Part I. Wood Fiber Science 32: 81-87.
6. Barklund, P. & Kowalski, T. (1996) Endophytic fungi in branches of Norway spruce with particular reference to Tryblidiopsis pinastri. Canadian Journal of Botany 74: 673-678.
7. Butin, H. & Kowalski, T. (1990) Die natürliche Astreinigung und ihre biologischen Voraussetzungen V. Die Pilzflora von Fichte, Kiefer und Lärche. European Journal of Forest Pathology 20: 44-54.
8. Butin, H. & Kowalski, T. (1992) Die natürliche Astreinigung und ihre biologischen Voraussetzungen. VI. Versuche zum Holzabbau durch Astreiniger-Pilze. European Journal of Forest Pathology 22: 174-182.
9. Carbone, I. & Kohn, L. M. (1993) Ribosomal DNA sequence divergence within internal transcribed spacer 1 of the Sclerotiniaceae. Mycologia 85: 415-427.
10. Currah, R. S., Sigler, L. & Hambleton, S. (1987) New records and new taxa of fungi from mycorrhizae of terrestrial orchids of Alberta. Canadian Journal of Botany 65: 2473-2582.
11. Currah, R. S., Tsuneda, A. & Murakami, S. (1993) Morphology and ecology of Phialocephala fortinii in roots of Rhododendron brachycarpum. Canadian Journal of Botany 71: 1639-1644.
12. Grünig, C. R., Sieber, T. N., Rogers, S. O. & Holdenrieder, O. (2002a) Genetic variability among strains of Phialocephala fortinii and phylogenetic analysis of the genus Phialocephala based on rDNA ITS sequence comparisons. Canadian Journal of Botany 80: 1239-1249.
13. Grünig, C. R., Sieber, T. N., Rogers, S. O. & Holdenrieder, O. (2002b) Spatial distribution of dark septate endophytes in a confined forest plot. Mycological Research 106: 832-840.
14. Hamelin, R. C. & Rail, J. (1997) Phylogeny of Gremmeniella spp. based on sequences of the 5.8S rDNA and internal transcribed spacer region. Canadian Journal of Botany 75: 693-698.
15. Harney, S. K., Rogers, S. O. & Wang, C. J. K. (1997) Molecular characterization of dematiaceous root endophytes. Mycological Research 101: 1397-1404.
16. Harney, S. K., Wentworth, T. S. & Wargo, P. M. (1995) Phialocephala fortinii, a potential fine root pathogen isolated from red spruce. Phytopathology 85: 1141.
17. Harrington, T. C. & Mcnew, D. L. (2003) Phylogenetic analysis places the Phialophora-like anamorph genus Cadophora in the Helotiales. Mycotaxon 87: 141-151.
18. Hasegawa, M., Kishino, H. & Yano, T. (1985) Dating the human ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22: 160-174.
19. Holdenrieder, O. & Sieber, T. N. (1992) Fungal associations of serially washed healthy non-mycorrhizal roots of Picea abies. Mycological Research 96: 151-156.
20. Huse, K. J. (1981) The distribution of fungi in sound-looking stems of Picea abies in Norway. European Journal of Forest Pathology 11: 1-6.
21. Hutchison, L. J. (1999) Wood-inhabiting microfungi isolated from Populus tremuloides from Alberta and northeastern Brithish Columbia. Canadian Journal of Botany 77: 898-905.
22. Jacobs, A., Coetzee, M. P. A., Wingfield, B. D., Jacobs, K. & Wingfield, M. J. (2003) Phylogenetic relationships among Phialocephala species and other ascomycetes. Mycologia 95: 637-645.
23. Jasalavich, C. A., Morales, V. M., Pelcher, L. E. & Seguin-Swartz, G. (1995) Comparison of nuclear ribosomal DNA sequences from Alternaria species pathogenic to crucifers. Mycological Research 99: 604-614.
24. Jones, H. L. & Worrall, J. J. (1995) Fungal biomass in decayed wood. Mycologia 87: 459-466.
25. Jumpponen, A., Mattson, K. G. & Trappe, J. M. (1998) Mycorrhizal functioning of Phialocephala fortinii with Pinus contorta on glacier forefront soil: interactions with soil nitrogen and organic matter. Mycorrhiza 7: 261-265.
26. Jumpponen, A. & Trappe, J. M. (1998) Dark septate endophytes: a review of facultative biotrophic root-colonizing fungi. New Phytologist 140: 295-310.
27. Kåren, O., Högberg, N., Dahlberg, A., Jonsson, L. & Nylund, J. E. (1997) Inter- and intraspecific variation in the ITS region of rDNA of ectomycorrhizal fungi in Fennoscandia as detected by endonuclease analysis. New Phytologist 136: 313-325.
28. Kehr, R. D. & Wulf, A. (1993) Fungi associated with above-ground portions of declining oaks (Quercus robur) in Germany. European Journal of Forest Pathology 23: 18-27.
29. Kernaghan, G., Sigler, L. & Khasa, D. (2003) Mycorrhizal and root endophytic fungi of containerized Picea glauca seedlings assessed by rDNA sequence analysis. Microbial Ecology 45: 128-136.
30. Kowalski, T. (1991) Oak decline I. Fungi associated with various disease symptoms on overground portions of middle-aged and old oak (Quercus rohur L.). European Journal of Forest Pathology 21: 136-151.
31. Kowalski, T. & Kehr, R. D. (1992) Endophytic fungal colonization of branch bases in several forest tree species. Sydowia 44: 137-168.
32. Lygis, V., Vasiliauskas, R. & Stenlid, J. (2004) Planting Betula pendula on pine sites infested by Heterobasidion annosum: disease transfer, silvicultural evaluation, and community of wood-inhabiting fungi. Canadian Journal of Forest Research 34: 120-130.
33. Lygis, V., Vasiliauskas, R., Stenlid, J. & Vasiliauskas, A. (2004) Silvicultural and pathological evaluation of Scots pine afforestations mixed with trees to reduce the infections by Heterobasidion annosum. Forest Ecology and Management (in press).
34. Melin, E. (1921) Über die Mykorrhizen von Pinus sylvestris L. und Picea abies (L.) Karst. (vorläufige Mitteilungen). Svensk Botanisk Tidskrift 15: 192-203.
35. Melin, E. (1923) Experimentelle Untersuchungen über die Konstitution und Ökologie der Mykorrhizen von Pinus sylveslris L. und Picea abies (L.) Karst. In Mykologische Untersuchungen (R. Flack, ed.): 73-334. G. Gottheilt, Kassel.
36. Morales, V. M., Jasalavich, C. A., Reicher, L. E., Petrie, A. G. & Taylor, J. L. (1995) Phylogenetic relationship among several Leptosphaeria species based on their ribosomal DNA sequences. Mycological Research 99: 593-603.
37. O'Donnell, K. (1992) Ribosomal DNA internal transcribed spacers are highly divergent in the phytopathogenic ascomycete Fusarium sambucinum (Gibberella pulicaris). Current Genetics 22: 213-220.
38. Rambaut, A. (1996) Se-Al. Sequence Alignment Editor. Version 1.0 alpha 1. University of Oxford, Oxford.
39. Read, D. J. & Haselwandter, K. (1981) Observations on the mycorrhizal status of some alpine plant communities. New Phytologist 88: 341-353.
40. Rehner, S. A. & Uecker, F. A. (1994) Nuclear ribosomal internal transcribed spacer phylogeny and host diversity in the coelomycete Phomopsis. Canadian Journal of Botany 72: 1666-1674.
41. Richard, C. & Fortin, J. A. (1974) Distribution géographique, écologie, physiologie, pathogenicité et sporulation du Mycelium radicis atrovirens. Phytoprotection 55: 67-88.
42. Roll-Hansen, F. & Roll-Hansen, H. (1979) Microflora of sound-looking wood in Picea abies stems. European Journal of Forest Pathology 9: 308-316.
43. Roll-Hansen, F. & Roll-Hansen, H. (1980a) Microorganisms which invade Picea abies in seasonal stem wounds I. General aspects. Hymenomycetes. European Journal of Forest Pathology 10: 321-339.
44. Roll-Hansen, F. & Roll-Hansen, H. (1980b) Microorganisms which invade Picea abies in seasonal stem wounds II. Ascomycetes, fungi imperfecti, and bacteria. General discussion. Hymenomycetes included. European Journal of Forest Pathology 10: 396-410.
45. Sieber, T. N. (2002) Fungal root endophytes. In Plant Roots: the hidden half (Y. Wasel, A. Eshel & U. Kafkafi, eds): 887-917. Marcel Dekker, New York.
46. Skouboe, P., Frisvad, J. C., Taylor, J. W., Lauritsen, D., Boysen, M. & Rossen, L. (1999) Phylogenetic analysis of nucleotide sequences from the ITS region of terverticillate Penicillium species. Mycological Research 103: 873-881.
47. Stenlid, J. (1985) Population structure of Heterobasidion annosum as determined by somatic incompatibility, sexual incompatibility, and isoenzyme patterns. Canadian Journal of Botany 63: 2268-2273.
48. Stoyke, G. & Currah, R. S. (1991) Endophytic fungi from the mycorrhizae of alpine ericoid plants. Canadian Journal of Botany 69: 347-352.
49. Stoyke, G., Egger, K. N. & Currah, R. S. (1992) Characterization of sterile endophytic fungi from the mycorrhizae of sub-alpine plants. Canadian Journal of Botany 70: 2009-2016.
50. Swofford, D. L. (2002) PAUP*: phylogenetic analysis using parsimony (* and other methods). Version 4. Sinauer Associates. Sunderland, MA.
51. White, T. J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenethics. In PCR Protocols: a guide to methods and applications (M. A. Innis, D. H. Gelfand, J. J. Sninsky & T. J. White, eds): 315-322. Academic Press, San Diego.
52. Wilcox, H. E. & Wang, C. J. K. (1987a) Ectomycorrhizal and ectendomycorrhizal associations of Phialophora finlandia with Pinus reginosa, Picea rubens, and Betula alleghaniensis. Canadian Journal of Forest Research 17: 976-990.
53. Wilcox, H. E. & Wang, C. J. K. (1987b) Mycorrhizal and pathological associations of dematiaceous fungi in roots of 7-month-old tree seedlings. Canadian Journal of Forest Research 17: 884-899.