-
1
-
-
0035989336
-
Computational immunology: The coming of age
-
Petrovsky N, Brusic V (2002) Computational immunology: the coming of age. Immunol Cell Biol 80:248-254
-
(2002)
Immunol Cell Biol
, vol.80
, pp. 248-254
-
-
Petrovsky, N.1
Brusic, V.2
-
3
-
-
0025321903
-
Crystal structures of an antibody to a peptide and its complex with peptide antigen at 2.8 Å
-
Stanfield RL, Fieser TM, Lerner RA, Wilson IA (1990) Crystal structures of an antibody to a peptide and its complex with peptide antigen at 2.8 Å. Science 248:712-719
-
(1990)
Science
, vol.248
, pp. 712-719
-
-
Stanfield, R.L.1
Fieser, T.M.2
Lerner, R.A.3
Wilson, I.A.4
-
4
-
-
0025151612
-
Small rearrangements in structures of Fv and Fab fragments of antibody D1.3 on antigen binding
-
Bath TN, Bentley GA, Fischmann TO, Boulot G, Poljak RJ (1990) Small rearrangements in structures of Fv and Fab fragments of antibody D1.3 on antigen binding. Nature 347:483-485
-
(1990)
Nature
, vol.347
, pp. 483-485
-
-
Bath, T.N.1
Bentley, G.A.2
Fischmann, T.O.3
Boulot, G.4
Poljak, R.J.5
-
5
-
-
0023090513
-
Three-dimensional structure of a complex of antibody with influenza virus neuraminidase
-
Colman PM, Laver WG, Varghese JN, Baker AT, Tulloch PA, Air GM, Webster RG (1987) Three-dimensional structure of a complex of antibody with influenza virus neuraminidase. Nature 326:358-363
-
(1987)
Nature
, vol.326
, pp. 358-363
-
-
Colman, P.M.1
Laver, W.G.2
Varghese, J.N.3
Baker, A.T.4
Tulloch, P.A.5
Air, G.M.6
Webster, R.G.7
-
6
-
-
0029744928
-
Complementarity determining region residues aspartic acid at H55 serine at tyrosines at H97 andL96 play important roles in the B72.3 antibody-TAG72 antigen interaction
-
Xiang J, Sha Y, Prasad L, Delbaere LTJ (1996) Complementarity determining region residues aspartic acid at H55 serine at tyrosines at H97 andL96 play important roles in the B72.3 antibody-TAG72 antigen interaction. Protein Eng 9:539-543
-
(1996)
Protein Eng
, vol.9
, pp. 539-543
-
-
Xiang, J.1
Sha, Y.2
Prasad, L.3
Delbaere, L.T.J.4
-
7
-
-
0026788298
-
Structural repertoire of the human Vh segments
-
Chothia C, Lesk AM, Gherardi E, Tomlinson IM, Walter G, Marks JD, Lewelyn MB, Winter G (1992) Structural repertoire of the human Vh segments. J Mol Biol 227:799-817
-
(1992)
J Mol Biol
, vol.227
, pp. 799-817
-
-
Chothia, C.1
Lesk, A.M.2
Gherardi, E.3
Tomlinson, I.M.4
Walter, G.5
Marks, J.D.6
Lewelyn, M.B.7
Winter, G.8
-
8
-
-
2642702546
-
Changes in the specificity of antibodies against steroid antigens by introduction of mutations into complementarity-determining regions of Vh domain
-
Iba Y, Hayshi N, Sawada I, Titani K, Kurosawa Y (1998) Changes in the specificity of antibodies against steroid antigens by introduction of mutations into complementarity-determining regions of Vh domain. Protein Eng 11:361-370
-
(1998)
Protein Eng
, vol.11
, pp. 361-370
-
-
Iba, Y.1
Hayshi, N.2
Sawada, I.3
Titani, K.4
Kurosawa, Y.5
-
10
-
-
1842765629
-
Prediction of protein-protein interaction sites using support vector machines
-
Minakuchil Y, Konagaya A (2004) Prediction of protein-protein interaction sites using support vector machines. Protein Eng Des Sel 17:165-173
-
(2004)
Protein Eng Des Sel
, vol.17
, pp. 165-173
-
-
Minakuchil, Y.1
Konagaya, A.2
-
11
-
-
0037093645
-
Dissecting protein-protein recognition sites
-
Chakrabarti P, Janin J (2002) Dissecting protein-protein recognition sites. Proteins 47:334-343
-
(2002)
Proteins
, vol.47
, pp. 334-343
-
-
Chakrabarti, P.1
Janin, J.2
-
12
-
-
0035342450
-
Residue frequencies and pairing preferences at protein-protein interfaces
-
Glaser F, Steinberg DM, Vakser A, Ben-Tal N (2001) Residue frequencies and pairing preferences at protein-protein interfaces. Proteins 43:89-102
-
(2001)
Proteins
, vol.43
, pp. 89-102
-
-
Glaser, F.1
Steinberg, D.M.2
Vakser, A.3
Ben-Tal, N.4
-
13
-
-
0037340493
-
Development of United Statistical Potentials describing protein-protein interactions
-
Lu L, Lu H, Skolnick J (2003) Development of United Statistical Potentials describing protein-protein interactions. Biophys J 84:1895-1901
-
(2003)
Biophys J
, vol.84
, pp. 1895-1901
-
-
Lu, L.1
Lu, H.2
Skolnick, J.3
-
14
-
-
0033047710
-
Neural network based predictor of residue contacts in proteins
-
Fariselli P, Casadio R (1999) Neural network based predictor of residue contacts in proteins. Protein Eng 12:15-21
-
(1999)
Protein Eng
, vol.12
, pp. 15-21
-
-
Fariselli, P.1
Casadio, R.2
-
15
-
-
0036122073
-
Prediction of protein-protein interaction sites in heterocomplexes with neural networks
-
Fariselli P, Pazos F, Valencia A, Casadio R (2002) Prediction of protein-protein interaction sites in heterocomplexes with neural networks. Eur J Biochem 269:1356-1361
-
(2002)
Eur J Biochem
, vol.269
, pp. 1356-1361
-
-
Fariselli, P.1
Pazos, F.2
Valencia, A.3
Casadio, R.4
-
16
-
-
0037229456
-
Analysing six types of protein-protein interfaces
-
Ofran Y, Rost B (2003) Analysing six types of protein-protein interfaces. J Mol Biol 325:377-387
-
(2003)
J Mol Biol
, vol.325
, pp. 377-387
-
-
Ofran, Y.1
Rost, B.2
-
17
-
-
0038356582
-
Predicted protein-protein interaction sites from local sequence information
-
Ofran Y, Rost B (2003) Predicted protein-protein interaction sites from local sequence information. FEBS Lett 544:236-239
-
(2003)
FEBS Lett
, vol.544
, pp. 236-239
-
-
Ofran, Y.1
Rost, B.2
-
18
-
-
3142717479
-
Identification of interface residues in protease-inhibitor and antigen-antibody complexes: A support vector machine approach
-
Yan C, Honavar V, Dobbs D (2004) Identification of interface residues in protease-inhibitor and antigen-antibody complexes: a support vector machine approach. Neural Comput Appl 13:123-129
-
(2004)
Neural Comput Appl
, vol.13
, pp. 123-129
-
-
Yan, C.1
Honavar, V.2
Dobbs, D.3
-
19
-
-
13244292990
-
A two-stage classifier for identification of protein-protein interface residues
-
Yan C, Dobbs D, Honavar V (2004) A two-stage classifier for identification of protein-protein interface residues. Bioinformatics 20(Suppl 1):i371-i378
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Yan, C.1
Dobbs, D.2
Honavar, V.3
-
20
-
-
0028109886
-
Conservation and prediction of solvent accessibility in protein families
-
Rost B, Sander C (1994) Conservation and prediction of solvent accessibility in protein families. Proteins 20:216-226
-
(1994)
Proteins
, vol.20
, pp. 216-226
-
-
Rost, B.1
Sander, C.2
-
21
-
-
0025039476
-
Predicting surface exposure of amino acids from protein sequence
-
Holbrook SR, Muskal SM, Kim SH (1990) Predicting surface exposure of amino acids from protein sequence. Protein Eng 3:659-665
-
(1990)
Protein Eng
, vol.3
, pp. 659-665
-
-
Holbrook, S.R.1
Muskal, S.M.2
Kim, S.H.3
-
23
-
-
0035189668
-
New method for accurate prediction of solvent accessibility from protein sequence
-
Li X, Pan XM (2001) New method for accurate prediction of solvent accessibility from protein sequence. Proteins 42:1-5
-
(2001)
Proteins
, vol.42
, pp. 1-5
-
-
Li, X.1
Pan, X.M.2
-
24
-
-
0032147008
-
Easy method to predict solvent accessibility from multiple protein sequence alignments
-
Pascarella S, De Persio R, Bossa F, Argos P (1998) Easy method to predict solvent accessibility from multiple protein sequence alignments. Proteins 32:190-199
-
(1998)
Proteins
, vol.32
, pp. 190-199
-
-
Pascarella, S.1
De Persio, R.2
Bossa, F.3
Argos, P.4
-
25
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22(12):2577-2637
-
(1983)
Biopolymers
, vol.22
, Issue.12
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
26
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gillliland G, Bhat TN, et al (2000) The Protein Data Bank. Nucleic Acids Res 28:235-242
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gillliland, G.4
Bhat, T.N.5
-
27
-
-
0030028728
-
Principles of protein-protein interactions
-
Jones S, Thornton JM (1996) Principles of protein-protein interactions. Proc Natl Acad Sci USA 93:13-20
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 13-20
-
-
Jones, S.1
Thornton, J.M.2
-
28
-
-
0031565729
-
Analysis of protein-protein interaction sites using surface patches
-
Jones S, Thornton JM (1997a) Analysis of protein-protein interaction sites using surface patches. J Mol Biol 272:121-132
-
(1997)
J Mol Biol
, vol.272
, pp. 121-132
-
-
Jones, S.1
Thornton, J.M.2
-
29
-
-
0031565725
-
Prediction of protein-protein interaction sites using patch analysis
-
Jones S, Thornton JM (1997b) Prediction of protein-protein interaction sites using patch analysis. J Mol Biol 272:133-143
-
(1997)
J Mol Biol
, vol.272
, pp. 133-143
-
-
Jones, S.1
Thornton, J.M.2
-
31
-
-
27144489164
-
A tutorial on support vector machines for pattern recognition
-
Burges C (1998) A tutorial on support vector machines for pattern recognition. Data Min Knowl Discov 2:121-167
-
(1998)
Data Min Knowl Discov
, vol.2
, pp. 121-167
-
-
Burges, C.1
-
32
-
-
34249753618
-
Support-vector network
-
Cortes C, Vapnik V (1995) Support-vector network. Mach Learn 20:273-297
-
(1995)
Mach Learn
, vol.20
, pp. 273-297
-
-
Cortes, C.1
Vapnik, V.2
-
33
-
-
0004990788
-
Mathematical programming for data mining: Formulations and challenges
-
Bradley PS, Fayyad UM, Magasarian OL (1999) Mathematical programming for data mining: formulations and challenges. INFORMS J Comput 11:217-238
-
(1999)
INFORMS J Comput
, vol.11
, pp. 217-238
-
-
Bradley, P.S.1
Fayyad, U.M.2
Magasarian, O.L.3
-
34
-
-
33746625785
-
Support vector machines approach to credit assessment
-
Sloot PMA et al (eds) ICCS, Springer, Berlin Heidelberg New York, pp
-
Li J, Liu J, Xu W, Shi Y (2004) Support vector machines approach to credit assessment. In: Sloot PMA et al (eds) ICCS 2004, LNCS 2658, Springer, Berlin Heidelberg New York, pp 892-899
-
(2004)
LNCS
, vol.2658
, pp. 892-899
-
-
Li, J.1
Liu, J.2
Xu, W.3
Shi, Y.4
-
35
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data using support vector machines
-
Brown MPS, Grundy WN, Lin D, Cristianini N, Sugnet C (2000) Knowledge-based analysis of microarray gene expression data using support vector machines. Proc Natl Acad Sci 97:262-267
-
(2000)
Proc Natl Acad Sci
, vol.97
, pp. 262-267
-
-
Brown, M.P.S.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.5
-
36
-
-
0033636139
-
Support vector machine classification and validation of cancer tissue samples using microarray expression data
-
Furey T, Cristianini N, Duffy N (2000) Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics 16:906-914
-
(2000)
Bioinformatics
, vol.16
, pp. 906-914
-
-
Furey, T.1
Cristianini, N.2
Duffy, N.3
-
38
-
-
84864177595
-
-
http://www.csie.ntu.e-du.tw/~cjlin/ libsvm
-
http://www.csie.ntu.edu.tw/~cjlin/libhttp://www.csie.ntu.e-du.tw/~cjlin/ libsvm
-
-
-
-
39
-
-
0141532921
-
Multiple criteria linear programming to data mining: Models, algorithm designs and software developments
-
Kou G, Liu X, Peng Y, Shi Y, Wise W, Xu W (2003) Multiple criteria linear programming to data mining: models, algorithm designs and software developments. Optim Methods Softw 18:453-473
-
(2003)
Optim Methods Softw
, vol.18
, pp. 453-473
-
-
Kou, G.1
Liu, X.2
Peng, Y.3
Shi, Y.4
Wise, W.5
Xu, W.6
-
40
-
-
16544387001
-
Classification of HIV-1 mediated neuronal dendritic and synaptic damage using multiple criteria linear programming
-
Zheng J, Zhuang W, Yan N, Kou G, Peng H, et al (2004) Classification of HIV-1 mediated neuronal dendritic and synaptic damage using multiple criteria linear programming. Neuroinformatics 2:303-326
-
(2004)
Neuroinformatics
, vol.2
, pp. 303-326
-
-
Zheng, J.1
Zhuang, W.2
Yan, N.3
Kou, G.4
Peng, H.5
|