-
1
-
-
20944433525
-
Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action
-
Ganter B, Tugendreich S, Pearson CI, Ayanoglu E, Baumhueter S, et al. (2005) Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action. J Biotechnol 119: 219-244.
-
(2005)
J Biotechnol
, vol.119
, pp. 219-244
-
-
Ganter, B.1
Tugendreich, S.2
Pearson, C.I.3
Ayanoglu, E.4
Baumhueter, S.5
-
2
-
-
11144356024
-
Integration of clinical and gene expression endpoints to explore furan-mediated hepatotoxicity
-
Hamadeh HK, Jayadev S, Gaillard ET, Huang Q, Stoll R, et al. (2004) Integration of clinical and gene expression endpoints to explore furan-mediated hepatotoxicity. Mutat Res 549: 169-183.
-
(2004)
Mutat Res
, vol.549
, pp. 169-183
-
-
Hamadeh, H.K.1
Jayadev, S.2
Gaillard, E.T.3
Huang, Q.4
Stoll, R.5
-
3
-
-
33645970724
-
Development of a toxicogenomics in vitro assay for the efficient characterization of compounds
-
Yang Y, Abel SJ, Ciurlionis R, Waring JF (2006) Development of a toxicogenomics in vitro assay for the efficient characterization of compounds. Pharmacogenomics 7: 177-186.
-
(2006)
Pharmacogenomics
, vol.7
, pp. 177-186
-
-
Yang, Y.1
Abel, S.J.2
Ciurlionis, R.3
Waring, J.F.4
-
4
-
-
0037938813
-
Development of a DNA microarray for toxicology based on hepatotoxin-regulated sequences
-
Waring JF, Cavet G, Jolly RA, McDowell J, Dai H, et al. (2003) Development of a DNA microarray for toxicology based on hepatotoxin-regulated sequences. EHP Toxicogenomics 111: 53-60.
-
(2003)
EHP Toxicogenomics
, vol.111
, pp. 53-60
-
-
Waring, J.F.1
Cavet, G.2
Jolly, R.A.3
McDowell, J.4
Dai, H.5
-
5
-
-
0034518116
-
Toxicogenomics-based discrimination of toxic mechanism in HepG2 human hepatoma cells
-
Burczynski ME, McMillian M, Ciervo J, Li L, Parker JB, et al. (2000) Toxicogenomics-based discrimination of toxic mechanism in HepG2 human hepatoma cells. Toxicol Sci 58: 399-415.
-
(2000)
Toxicol Sci
, vol.58
, pp. 399-415
-
-
Burczynski, M.E.1
McMillian, M.2
Ciervo, J.3
Li, L.4
Parker, J.B.5
-
6
-
-
19344370696
-
Functional dissection of an innate immune response by a genome-wide RNAi screen
-
Foley E, O'Farrell PH (2004) Functional dissection of an innate immune response by a genome-wide RNAi screen. PLoS Biol 2: e203.
-
(2004)
PLoS Biol
, vol.2
-
-
Foley, E.1
O'Farrell, P.H.2
-
7
-
-
33745639254
-
Identification of conserved pathways of DNA-damage response and radiation protection by genome-wide RNAi
-
van Haaften G, Romeijn R, Pothof J, Koole W, Mullenders LH, et al. (2006) Identification of conserved pathways of DNA-damage response and radiation protection by genome-wide RNAi. Curr Biol 16: 1344-1350.
-
(2006)
Curr Biol
, vol.16
, pp. 1344-1350
-
-
van Haaften, G.1
Romeijn, R.2
Pothof, J.3
Koole, W.4
Mullenders, L.H.5
-
8
-
-
31844440878
-
Functional genomics reveals genes involved in protein secretion and Golgi organization
-
Bard F, Casano L, Mallabiabarrena A, Wallace E, Saito K, et al. (2006) Functional genomics reveals genes involved in protein secretion and Golgi organization. Nature 439: 604-607.
-
(2006)
Nature
, vol.439
, pp. 604-607
-
-
Bard, F.1
Casano, L.2
Mallabiabarrena, A.3
Wallace, E.4
Saito, K.5
-
9
-
-
0037466652
-
DAF-16 target genes that control C. elegans life-span and metabolism
-
Lee SS, Kennedy S, Tolonen AC, Ruvkun G (2003) DAF-16 target genes that control C. elegans life-span and metabolism. Science 300: 644-647.
-
(2003)
Science
, vol.300
, pp. 644-647
-
-
Lee, S.S.1
Kennedy, S.2
Tolonen, A.C.3
Ruvkun, G.4
-
10
-
-
0037448540
-
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
-
Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, et al. (2003) Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 421: 231-237.
-
(2003)
Nature
, vol.421
, pp. 231-237
-
-
Kamath, R.S.1
Fraser, A.G.2
Dong, Y.3
Poulin, G.4
Durbin, R.5
-
11
-
-
8844239144
-
Genome-wide RNAi identifies p53-dependent and -independent regulators of germ cell apoptosis in C. elegans
-
Lettre G, Kritikou EA, Jaeggi M, Calixto A, Fraser AG, et al. (2004) Genome-wide RNAi identifies p53-dependent and -independent regulators of germ cell apoptosis in C. elegans. Cell Death Differ 11: 1198-1203.
-
(2004)
Cell Death Differ
, vol.11
, pp. 1198-1203
-
-
Lettre, G.1
Kritikou, E.A.2
Jaeggi, M.3
Calixto, A.4
Fraser, A.G.5
-
12
-
-
33646559053
-
A genome-wide Drosophila RNAi screen identifies DYRK-family kinases as regulators of NFAT
-
Gwack Y, Sharma S, Nardone J, Tanasa B, Iuga A, et al. (2006) A genome-wide Drosophila RNAi screen identifies DYRK-family kinases as regulators of NFAT. Nature 441: 646-650.
-
(2006)
Nature
, vol.441
, pp. 646-650
-
-
Gwack, Y.1
Sharma, S.2
Nardone, J.3
Tanasa, B.4
Iuga, A.5
-
13
-
-
12144289681
-
A large-scale RNAi screen in human cells identifies new components of the p53 pathway
-
Berns K, Hijmans EM, Mullenders J, Brummelkamp TR, Velds A, et al. (2004) A large-scale RNAi screen in human cells identifies new components of the p53 pathway. Nature 428: 431-437.
-
(2004)
Nature
, vol.428
, pp. 431-437
-
-
Berns, K.1
Hijmans, E.M.2
Mullenders, J.3
Brummelkamp, T.R.4
Velds, A.5
-
14
-
-
6944244084
-
A module map showing conditional activity of expression modules in cancer
-
Segal E, Friedman N, Koller D, Regev A (2004) A module map showing conditional activity of expression modules in cancer. Nat Genet 36: 1090-1098.
-
(2004)
Nat Genet
, vol.36
, pp. 1090-1098
-
-
Segal, E.1
Friedman, N.2
Koller, D.3
Regev, A.4
-
15
-
-
0037941585
-
Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
-
Segal E, Shapira M, Regev A, Pe'er D, Botstein D, et al. (2003) Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data. Nat Genet 34: 166-176.
-
(2003)
Nat Genet
, vol.34
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Pe'er, D.4
Botstein, D.5
-
17
-
-
0038048325
-
Inferring genetic networks and identifying compound mode of action via expression profiling
-
Gardner TS, di Bernardo D, Lorenz D, Collins JJ (2003) Inferring genetic networks and identifying compound mode of action via expression profiling. Science 301: 102-105.
-
(2003)
Science
, vol.301
, pp. 102-105
-
-
Gardner, T.S.1
di Bernardo, D.2
Lorenz, D.3
Collins, J.J.4
-
18
-
-
18144442687
-
Inferring subnetworks from perturbed expression profiles
-
Pe'er D, Regev A, Elidan G, Friedman N (2001) Inferring subnetworks from perturbed expression profiles. Bioinformatics 17 (Supplement 1): S215-S224.
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL.EMENT 1
-
-
Pe'er, D.1
Regev, A.2
Elidan, G.3
Friedman, N.4
-
19
-
-
17644427718
-
Causal protein-signaling networks derived from multiparameter single-cell data
-
Sachs K, Perez O, Pe'er D, Lauffenburger DA, Nolan GP (2005) Causal protein-signaling networks derived from multiparameter single-cell data. Science 308: 523-529.
-
(2005)
Science
, vol.308
, pp. 523-529
-
-
Sachs, K.1
Perez, O.2
Pe'er, D.3
Lauffenburger, D.A.4
Nolan, G.P.5
-
21
-
-
10744226222
-
Computational discovery of gene modules and regulatory networks
-
Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, et al. (2003) Computational discovery of gene modules and regulatory networks. Nat Biotechnol 21: 1337-1342.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 1337-1342
-
-
Bar-Joseph, Z.1
Gerber, G.K.2
Lee, T.I.3
Rinaldi, N.J.4
Yoo, J.Y.5
-
22
-
-
10044280457
-
Learning module networks from genome-wide location and expression data
-
Xu X, Wang L, Ding D (2004) Learning module networks from genome-wide location and expression data. FEBS Lett 578: 297-304.
-
(2004)
FEBS Lett
, vol.578
, pp. 297-304
-
-
Xu, X.1
Wang, L.2
Ding, D.3
-
23
-
-
0037456823
-
Genetics of gene expression surveyed in maize, mouse and man
-
Schadt EE, Monks SA, Drake TA, Lusis AJ, Che N, et al. (2003) Genetics of gene expression surveyed in maize, mouse and man. Nature 422: 297-302.
-
(2003)
Nature
, vol.422
, pp. 297-302
-
-
Schadt, E.E.1
Monks, S.A.2
Drake, T.A.3
Lusis, A.J.4
Che, N.5
-
24
-
-
3242806720
-
An integrative genomics approach to the reconstruction of gene networks in segregating populations
-
Zhu J, Lum PY, Lamb J, GuhaThakurta D, Edwards SW, et al. (2004) An integrative genomics approach to the reconstruction of gene networks in segregating populations. Cytogenet Genome Res 105: 363-374.
-
(2004)
Cytogenet Genome Res
, vol.105
, pp. 363-374
-
-
Zhu, J.1
Lum, P.Y.2
Lamb, J.3
GuhaThakurta, D.4
Edwards, S.W.5
-
25
-
-
0036727416
-
Efficient delivery of siRNA for inhibition of gene expression in postnatal mice
-
Lewis DL, Hagstrom JE, Loomis AG, Wolff JA, Herweijer H (2002) Efficient delivery of siRNA for inhibition of gene expression in postnatal mice. Nat Genet 32: 107-108.
-
(2002)
Nat Genet
, vol.32
, pp. 107-108
-
-
Lewis, D.L.1
Hagstrom, J.E.2
Loomis, A.G.3
Wolff, J.A.4
Herweijer, H.5
-
26
-
-
33750008991
-
Transcriptional and phenotypic comparisons of Ppara knockout and siRNA knockdown mice
-
De Souza AT, Dai X, Spencer AG, Reppen T, Menzie A, et al. (2006) Transcriptional and phenotypic comparisons of Ppara knockout and siRNA knockdown mice. Nucleic Acids Res 34: 4486-4494.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4486-4494
-
-
De Souza, A.T.1
Dai, X.2
Spencer, A.G.3
Reppen, T.4
Menzie, A.5
-
27
-
-
21944436304
-
A simple constraint-based algorithm for efficiently mining observational databases for causal relationships
-
Cooper GF (1997) A simple constraint-based algorithm for efficiently mining observational databases for causal relationships. Data Mining Knowl Discov 1: 203-224.
-
(1997)
Data Mining Knowl Discov
, vol.1
, pp. 203-224
-
-
Cooper, G.F.1
-
29
-
-
33745782050
-
Agonists of the peroxisome proliferator-activated receptor alpha induce a fiber-type-selective transcriptional response in rat skeletal muscle
-
De Souza AT, Cornwell PD, Dai X, Caguyong MJ, Ulrich RG (2006) Agonists of the peroxisome proliferator-activated receptor alpha induce a fiber-type-selective transcriptional response in rat skeletal muscle. Toxicol Sci 92: 578-586.
-
(2006)
Toxicol Sci
, vol.92
, pp. 578-586
-
-
De Souza, A.T.1
Cornwell, P.D.2
Dai, X.3
Caguyong, M.J.4
Ulrich, R.G.5
-
30
-
-
0034623243
-
Peroxisome proliferator-activated receptor alpha-mediated pathways are altered in hepatocyte-specific retinoid X receptor alpha-deficient mice
-
Wan YJ, Cai Y, Lungo W, Fu P, Locker J, et al. (2000) Peroxisome proliferator-activated receptor alpha-mediated pathways are altered in hepatocyte-specific retinoid X receptor alpha-deficient mice. J Biol Chem 275: 28285-28290.
-
(2000)
J Biol Chem
, vol.275
, pp. 28285-28290
-
-
Wan, Y.J.1
Cai, Y.2
Lungo, W.3
Fu, P.4
Locker, J.5
-
31
-
-
0034687397
-
The nuclear receptor CAR mediates specific xenobiotic induction of drug metabolism
-
Wei P, Zhang J, Egan-Hafley M, Liang S, Moore DD (2000) The nuclear receptor CAR mediates specific xenobiotic induction of drug metabolism. Nature 407: 920-923.
-
(2000)
Nature
, vol.407
, pp. 920-923
-
-
Wei, P.1
Zhang, J.2
Egan-Hafley, M.3
Liang, S.4
Moore, D.D.5
-
32
-
-
0033224545
-
Medium chain acyl-CoA dehydrogenase deficiency human genome epidemiology review
-
Wang SS, Fernhoff PM, Hannon WH, Khoury MJ (1999) Medium chain acyl-CoA dehydrogenase deficiency human genome epidemiology review. Genet Med 1: 332-339.
-
(1999)
Genet Med
, vol.1
, pp. 332-339
-
-
Wang, S.S.1
Fernhoff, P.M.2
Hannon, W.H.3
Khoury, M.J.4
-
33
-
-
55449117637
-
Medium-chain acyl-CoA dehydrogenase deficiency in gene-targeted mice
-
Tolwani RJ, Hamm DA, Tian L, Sharer JD, Vockley J, et al. (2005) Medium-chain acyl-CoA dehydrogenase deficiency in gene-targeted mice. PLoS Genet 1: e23.
-
(2005)
PLoS Genet
, vol.1
-
-
Tolwani, R.J.1
Hamm, D.A.2
Tian, L.3
Sharer, J.D.4
Vockley, J.5
-
34
-
-
0033847132
-
Phosphoenolpyruvate carboxykinase is necessary for the integration of hepatic energy metabolism
-
She P, Shiota M, Shelton KD, Chalkley R, Postic C, et al. (2000) Phosphoenolpyruvate carboxykinase is necessary for the integration of hepatic energy metabolism. Mol Cell Biol 20: 6508-6517.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 6508-6517
-
-
She, P.1
Shiota, M.2
Shelton, K.D.3
Chalkley, R.4
Postic, C.5
-
36
-
-
20144388684
-
Prevention of obesity in mice by antisense oligonucleotide inhibitors of stearoyl-CoA desaturase-1
-
Jiang G, Li Z, Liu F, Ellsworth K, Dallas-Yang Q, et al. (2005) Prevention of obesity in mice by antisense oligonucleotide inhibitors of stearoyl-CoA desaturase-1. J Clin Invest 115: 1030-1038.
-
(2005)
J Clin Invest
, vol.115
, pp. 1030-1038
-
-
Jiang, G.1
Li, Z.2
Liu, F.3
Ellsworth, K.4
Dallas-Yang, Q.5
-
37
-
-
2542635631
-
Diminished hepatocellular proliferation in mice humanized for the nuclear receptor peroxisome proliferator-activated receptor alpha
-
Cheung C, Akiyama TE, Ward JM, Nicol CJ, Feigenbaum L, et al. (2004) Diminished hepatocellular proliferation in mice humanized for the nuclear receptor peroxisome proliferator-activated receptor alpha. Cancer Res 64: 3849-3854.
-
(2004)
Cancer Res
, vol.64
, pp. 3849-3854
-
-
Cheung, C.1
Akiyama, T.E.2
Ward, J.M.3
Nicol, C.J.4
Feigenbaum, L.5
-
38
-
-
33646180263
-
Differential susceptibility of mice humanized for peroxisome proliferator-activated receptor alpha to Wy-14,643-induced liver tumorigenesis
-
Morimura K, Cheung C, Ward JM, Reddy JK, Gonzalez FJ (2006) Differential susceptibility of mice humanized for peroxisome proliferator-activated receptor alpha to Wy-14,643-induced liver tumorigenesis. Carcinogenesis 27: 1074-1080.
-
(2006)
Carcinogenesis
, vol.27
, pp. 1074-1080
-
-
Morimura, K.1
Cheung, C.2
Ward, J.M.3
Reddy, J.K.4
Gonzalez, F.J.5
-
39
-
-
0028146233
-
Diet-induced atherosclerosis in mice heterozygous and homozygous for apolipoprotein E gene disruption
-
Zhang SH, Reddick RL, Burkey B, Maeda N (1994) Diet-induced atherosclerosis in mice heterozygous and homozygous for apolipoprotein E gene disruption. J Clin Invest 94: 937-945.
-
(1994)
J Clin Invest
, vol.94
, pp. 937-945
-
-
Zhang, S.H.1
Reddick, R.L.2
Burkey, B.3
Maeda, N.4
-
40
-
-
33644654777
-
Reversal of diet-induced hepatic steatosis and hepatic insulin resistance by antisense oligonucleotide inhibitors of acetyl-CoA carboxylases 1 and 2
-
Savage DB, Choi CS, Samuel VT, Liu ZX, Zhang D, et al. (2006) Reversal of diet-induced hepatic steatosis and hepatic insulin resistance by antisense oligonucleotide inhibitors of acetyl-CoA carboxylases 1 and 2. J Clin Invest 116: 817-824.
-
(2006)
J Clin Invest
, vol.116
, pp. 817-824
-
-
Savage, D.B.1
Choi, C.S.2
Samuel, V.T.3
Liu, Z.X.4
Zhang, D.5
-
41
-
-
0033636139
-
Support vector machine classification and validation of cancer tissue samples using microarray expression data
-
Furey TS, Cristianini N, Duffy N, Bednarski DW, Schummer M, et al. (2000) Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics 16: 906-914.
-
(2000)
Bioinformatics
, vol.16
, pp. 906-914
-
-
Furey, T.S.1
Cristianini, N.2
Duffy, N.3
Bednarski, D.W.4
Schummer, M.5
|