-
1
-
-
0037026489
-
The voltage-gated potassium channels and their relatives
-
Yellen, G. (2002) The voltage-gated potassium channels and their relatives, Nature 419, 35-42.
-
(2002)
Nature
, vol.419
, pp. 35-42
-
-
Yellen, G.1
-
2
-
-
0242657337
-
Potassium channels
-
Mackinnon, R. (2003) Potassium channels, FEBS Lett. 555, 62-65.
-
(2003)
FEBS Lett
, vol.555
, pp. 62-65
-
-
Mackinnon, R.1
-
3
-
-
0032478818
-
+ conduction and selectivity
-
+ conduction and selectivity, Science 280, 69-77.
-
(1998)
Science
, vol.280
, pp. 69-77
-
-
Doyle, D.A.1
Cabral, J.M.2
Pfuetzner, R.A.3
Kuo, A.4
Gulbis, J.M.5
Cohen, S.L.6
Cahit, B.T.7
MacKinnon, R.8
-
5
-
-
0142185496
-
+ selectivity filter: Charge balance and coupling of ion binding to a protein conformational change underlie high conduction rates
-
+ selectivity filter: Charge balance and coupling of ion binding to a protein conformational change underlie high conduction rates, J. Mol. Biol. 333, 965-975.
-
(2003)
J. Mol. Biol
, vol.333
, pp. 965-975
-
-
Zhou, Y.1
MacKinnon, R.2
-
6
-
-
0037198626
-
Crystal structure and mechanism of a calcium-gated potassium channel
-
Jiang, Y., Lee, A., Chen, J., Cadene, M., Chait, B. T., and MacKinnon, R. (2002) Crystal structure and mechanism of a calcium-gated potassium channel, Nature 417, 515-522.
-
(2002)
Nature
, vol.417
, pp. 515-522
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Cadene, M.4
Chait, B.T.5
MacKinnon, R.6
-
7
-
-
0037198625
-
The open pore conformation of potassium channels
-
Jiang, Y., Lee, A., Chen, J., Cadene, M., Chait, B. T., and MacKinnon, R. (2002) The open pore conformation of potassium channels, Nature 417, 523-526.
-
(2002)
Nature
, vol.417
, pp. 523-526
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Cadene, M.4
Chait, B.T.5
MacKinnon, R.6
-
8
-
-
0038076054
-
+ channel
-
+ channel, Nature 423, 33-41.
-
(2003)
Nature
, vol.423
, pp. 33-41
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Ruta, V.4
Cadene, M.5
Chait, B.T.6
Mackinnon, R.7
-
9
-
-
12444274301
-
Crystal structure of the potassium channel KirBac1.1 in the closed state
-
Kuo, A., Gulbis, J. M., Antcliff, J. F., Rahman, T., Lowe, E. D., Zimmer, J., Cuthbertson, J., Ashcroft, F. M., Ezaki, T., and Doyle, D. A. (2003) Crystal structure of the potassium channel KirBac1.1 in the closed state, Science 300, 1922-1926.
-
(2003)
Science
, vol.300
, pp. 1922-1926
-
-
Kuo, A.1
Gulbis, J.M.2
Antcliff, J.F.3
Rahman, T.4
Lowe, E.D.5
Zimmer, J.6
Cuthbertson, J.7
Ashcroft, F.M.8
Ezaki, T.9
Doyle, D.A.10
-
12
-
-
33745041507
-
Molecular determinants of gating at the potassium-channel selectivity filter
-
Cordero-Morales, J. F., Cuello, L. G., Zhao, Y. X., Jogini, V., Cortes, D. M., Roux, B., and Perozo, E. (2006) Molecular determinants of gating at the potassium-channel selectivity filter, Nat. Struct. Mol. Biol. 13, 311-318.
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 311-318
-
-
Cordero-Morales, J.F.1
Cuello, L.G.2
Zhao, Y.X.3
Jogini, V.4
Cortes, D.M.5
Roux, B.6
Perozo, E.7
-
13
-
-
8744224521
-
Functional characterization of a prokaryotic Kir channel
-
Enkvetchakul, D., Bhattacharyya, J., Jeliazkova, I., Groesbeck, D. K., Cukras, C. A., and Nichols, C. G. (2004) Functional characterization of a prokaryotic Kir channel, J. Biol. Chem. 279, 47076-47080.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 47076-47080
-
-
Enkvetchakul, D.1
Bhattacharyya, J.2
Jeliazkova, I.3
Groesbeck, D.K.4
Cukras, C.A.5
Nichols, C.G.6
-
14
-
-
27744586089
-
Direct modulation of Kir channel gating by membrane phosphatidylinositol 4,5-bisphosphate
-
Enkvetchakul, D., Jeliazkova, I., and Nichols, C. G. (2005) Direct modulation of Kir channel gating by membrane phosphatidylinositol 4,5-bisphosphate, J. Biol. Chem. 280, 35785-35788.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 35785-35788
-
-
Enkvetchakul, D.1
Jeliazkova, I.2
Nichols, C.G.3
-
15
-
-
0030934798
-
Inward rectifier potassium channels
-
Nichols, C. G., and Lopatin, A. N. (1997) Inward rectifier potassium channels, Annu. Rev. Physiol. 59, 171-191.
-
(1997)
Annu. Rev. Physiol
, vol.59
, pp. 171-191
-
-
Nichols, C.G.1
Lopatin, A.N.2
-
16
-
-
0033179841
-
Inwardly rectifying potassium channels
-
Reimann, F., and Ashcroft, F. M. (1999) Inwardly rectifying potassium channels, Curr. Opin. Cell Biol. 11, 503-508.
-
(1999)
Curr. Opin. Cell Biol
, vol.11
, pp. 503-508
-
-
Reimann, F.1
Ashcroft, F.M.2
-
17
-
-
0037184996
-
Structural basis of inward rectification: Cytoplasmic pore of the G protein-gated inward rectifier GIRK1 at 1.8 Å resolution
-
Nishida, M., and MacKinnon, R. (2002) Structural basis of inward rectification: Cytoplasmic pore of the G protein-gated inward rectifier GIRK1 at 1.8 Å resolution, Cell 111, 957-965.
-
(2002)
Cell
, vol.111
, pp. 957-965
-
-
Nishida, M.1
MacKinnon, R.2
-
18
-
-
14544298750
-
Cytoplasmic domain structures of Kir2.1 and Kir3.1 show sites for modulating gating and rectification
-
Pegan, S., Arrabit, C., Zhou, W., Kwiatkowski, W., Collins, A., Slesinger, P. A., and Choe, S. (2005) Cytoplasmic domain structures of Kir2.1 and Kir3.1 show sites for modulating gating and rectification, Nat. Neurosci. 8, 279-287.
-
(2005)
Nat. Neurosci
, vol.8
, pp. 279-287
-
-
Pegan, S.1
Arrabit, C.2
Zhou, W.3
Kwiatkowski, W.4
Collins, A.5
Slesinger, P.A.6
Choe, S.7
-
20
-
-
0035013633
-
Molecular architecture of full-length KcsA: Role of cytoplasmic domains in ion permeation and activation gating
-
Cortes, D. M., Cuello, L. G., and Perozo, E. (2001) Molecular architecture of full-length KcsA: Role of cytoplasmic domains in ion permeation and activation gating, J. Gen. Physiol. 117, 165-180.
-
(2001)
J. Gen. Physiol
, vol.117
, pp. 165-180
-
-
Cortes, D.M.1
Cuello, L.G.2
Perozo, E.3
-
22
-
-
4444359501
-
Characteristic interactions with phosphatidylinositol 4,5-bisphosphate determine regulation of Kir channels by diverse modulators
-
Du, X. O., Zhang, H. L., Lopes, C., Mirshahi, T., Rohacs, T., and Logothetis, D. E. (2004) Characteristic interactions with phosphatidylinositol 4,5-bisphosphate determine regulation of Kir channels by diverse modulators, J. Biol. Chem. 279, 37271-37281.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 37271-37281
-
-
Du, X.O.1
Zhang, H.L.2
Lopes, C.3
Mirshahi, T.4
Rohacs, T.5
Logothetis, D.E.6
-
23
-
-
3042686492
-
Mapping the architecture of the ATP-binding site of the K-ATP channel subunit Kir6.2
-
Dabrowski, M., Tarasov, A., and Ashcroft, F. M. (2004) Mapping the architecture of the ATP-binding site of the K-ATP channel subunit Kir6.2, J. Physiol. 557, 347-354.
-
(2004)
J. Physiol
, vol.557
, pp. 347-354
-
-
Dabrowski, M.1
Tarasov, A.2
Ashcroft, F.M.3
-
24
-
-
0038714391
-
Identification of residues contributing to the ATP binding site of Kir6.2
-
Trapp, S., Haider, S., Sansom, M. S. P., Ashcroft, F. M., and Jones, P. (2003) Identification of residues contributing to the ATP binding site of Kir6.2, EMBO J. 22, 2903-2912.
-
(2003)
EMBO J
, vol.22
, pp. 2903-2912
-
-
Trapp, S.1
Haider, S.2
Sansom, M.S.P.3
Ashcroft, F.M.4
Jones, P.5
-
25
-
-
0037015161
-
Lipids in the structure, folding and function of the KcsA channel
-
Valiyaveetil, F. I., Zhou, Y., and MacKinnon, R. (2002) Lipids in the structure, folding and function of the KcsA channel, Biochemistry 41, 10771-10777.
-
(2002)
Biochemistry
, vol.41
, pp. 10771-10777
-
-
Valiyaveetil, F.I.1
Zhou, Y.2
MacKinnon, R.3
-
26
-
-
0037464463
-
Interaction of K channel KcsA with membrane phospholipids as studied by ESI mass spectrometry
-
Demmers, J. A. A., van Dalen, A., de Kruijiff, B., Heck, A. J. R., and Killian, J. A. (2003) Interaction of K channel KcsA with membrane phospholipids as studied by ESI mass spectrometry, FEBS Lett. 541, 28-32.
-
(2003)
FEBS Lett
, vol.541
, pp. 28-32
-
-
Demmers, J.A.A.1
van Dalen, A.2
de Kruijiff, B.3
Heck, A.J.R.4
Killian, J.A.5
-
27
-
-
0041828861
-
The potassium channel KcsA and its interaction with the lipid bilayer
-
Williamson, I. M., Alvis, S. J., East, J. M., and Lee, A. G. (2003) The potassium channel KcsA and its interaction with the lipid bilayer, Cell. Mol. Life Sci. 60, 1581-1590.
-
(2003)
Cell. Mol. Life Sci
, vol.60
, pp. 1581-1590
-
-
Williamson, I.M.1
Alvis, S.J.2
East, J.M.3
Lee, A.G.4
-
28
-
-
28444439627
-
The interfacial lipid binding site on the potassium channel KcsA is specific for anionic phospholipids
-
Marius, P., Alvis, S. J., East, J. M., and Lee, A. G. (2005) The interfacial lipid binding site on the potassium channel KcsA is specific for anionic phospholipids, Biophys. J. 89, 4081-4089.
-
(2005)
Biophys. J
, vol.89
, pp. 4081-4089
-
-
Marius, P.1
Alvis, S.J.2
East, J.M.3
Lee, A.G.4
-
29
-
-
0037071897
-
Alterations in conserved Kir channel-PIP2 interactions underlie channelopathies
-
Lopes, C. M. B., Zhang, H. L., Rohacs, T., Jin, T. H., Yang, J., and Logothetis, D. E. (2002) Alterations in conserved Kir channel-PIP2 interactions underlie channelopathies, Neuron 34, 933-944.
-
(2002)
Neuron
, vol.34
, pp. 933-944
-
-
Lopes, C.M.B.1
Zhang, H.L.2
Rohacs, T.3
Jin, T.H.4
Yang, J.5
Logothetis, D.E.6
-
30
-
-
0037518226
-
Phosphatidylinositol 4,5-bisphosphate (PIP2) modulation of ATP and pH sensitivity in Kir channels. A tale of an active and a silent PIP2 site in the N terminus
-
Schulze, D., Krauter, T., Fritzenschaft, H., Soom, M., and Baukrowitz, T. (2003) Phosphatidylinositol 4,5-bisphosphate (PIP2) modulation of ATP and pH sensitivity in Kir channels. A tale of an active and a silent PIP2 site in the N terminus, J. Biol. Chem. 278, 10500-10505.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 10500-10505
-
-
Schulze, D.1
Krauter, T.2
Fritzenschaft, H.3
Soom, M.4
Baukrowitz, T.5
-
33
-
-
27344432813
-
+ channel open probability by phosphatidylinositol 4,5-bisphosphate
-
+ channel open probability by phosphatidylinositol 4,5-bisphosphate, J. Neurosci. 25, 9825-9835.
-
(2005)
J. Neurosci
, vol.25
, pp. 9825-9835
-
-
Li, Y.1
Gamper, N.2
Hilgemann, D.W.3
Shapiro, M.S.4
-
34
-
-
20444428008
-
Regulation of ion channels by phosphatidylinositol 4,5-bisphosphate
-
Suh, B. C., and Hille, B. (2005) Regulation of ion channels by phosphatidylinositol 4,5-bisphosphate, Curr. Opin. Neurobiol. 15, 370-378.
-
(2005)
Curr. Opin. Neurobiol
, vol.15
, pp. 370-378
-
-
Suh, B.C.1
Hille, B.2
-
35
-
-
7044224837
-
Computer simulations of membrane proteins
-
Ash, W. L., Zlomislic, M. R., Oloo, E. O., and Tieleman, D. P. (2004) Computer simulations of membrane proteins, Biochim. Biophys. Acta 1666, 158-189.
-
(2004)
Biochim. Biophys. Acta
, vol.1666
, pp. 158-189
-
-
Ash, W.L.1
Zlomislic, M.R.2
Oloo, E.O.3
Tieleman, D.P.4
-
36
-
-
4143116650
-
Computational studies of membrane channels
-
Roux, B., and Schulten, K. (2004) Computational studies of membrane channels, Structure 12, 1343-1351.
-
(2004)
Structure
, vol.12
, pp. 1343-1351
-
-
Roux, B.1
Schulten, K.2
-
37
-
-
4143053760
-
Potassium channel structures: Do they conform?
-
Gulbis, J. M., and Doyle, D. A. (2004) Potassium channel structures: Do they conform? Curr. Opin. Struct. Biol. 14, 440-446.
-
(2004)
Curr. Opin. Struct. Biol
, vol.14
, pp. 440-446
-
-
Gulbis, J.M.1
Doyle, D.A.2
-
38
-
-
0034123344
-
Homology modelling and molecular dynamics simulation studies of an inward rectifier potassium channel
-
Capener, C. E., Shrivastava, I. H., Ranatunga, K. M., Forrest, L. R., Smith, G. R., and Sansom, M. S. P. (2000) Homology modelling and molecular dynamics simulation studies of an inward rectifier potassium channel, Biophys. J. 78, 2929-2942.
-
(2000)
Biophys. J
, vol.78
, pp. 2929-2942
-
-
Capener, C.E.1
Shrivastava, I.H.2
Ranatunga, K.M.3
Forrest, L.R.4
Smith, G.R.5
Sansom, M.S.P.6
-
39
-
-
0037382256
-
Filter flexibility in a mammalian K channel: Models and simulations of Kir6.2 mutants
-
Capener, C. E., Proks, P., Ashcroft, F. M., and Sansom, M. S. P. (2003) Filter flexibility in a mammalian K channel: Models and simulations of Kir6.2 mutants, Biophys. J. 84, 2345-2356.
-
(2003)
Biophys. J
, vol.84
, pp. 2345-2356
-
-
Capener, C.E.1
Proks, P.2
Ashcroft, F.M.3
Sansom, M.S.P.4
-
40
-
-
13444274375
-
Functional analysis of a structural model of the ATP-binding site of the KATP channel Kir6.2 subunit
-
Antcliffe, J. F., Haider, S., Proks, P., Sansom, M. S. P., and Ashcroft, F. M. (2005) Functional analysis of a structural model of the ATP-binding site of the KATP channel Kir6.2 subunit, EMBO J. 24, 229-239.
-
(2005)
EMBO J
, vol.24
, pp. 229-239
-
-
Antcliffe, J.F.1
Haider, S.2
Proks, P.3
Sansom, M.S.P.4
Ashcroft, F.M.5
-
41
-
-
19444367729
-
Focus on Kir6.2: A key component of the ATP-sensitive potassium channel
-
Haider, S., Antcliff, J. F., Proks, P., Sansom, M. S. P., and Ashcroft, F. M. (2005) Focus on Kir6.2: A key component of the ATP-sensitive potassium channel, J. Mol. Cell. Cardiol. 38, 927-936.
-
(2005)
J. Mol. Cell. Cardiol
, vol.38
, pp. 927-936
-
-
Haider, S.1
Antcliff, J.F.2
Proks, P.3
Sansom, M.S.P.4
Ashcroft, F.M.5
-
42
-
-
0344236133
-
Lipid-protein interactions and the membrane/water interfacial region
-
Domene, C., Bond, P. J., Deol, S. S., and Sansom, M. S. P. (2003) Lipid-protein interactions and the membrane/water interfacial region, J. Am. Chem. Soc. 125, 14966-14967.
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 14966-14967
-
-
Domene, C.1
Bond, P.J.2
Deol, S.S.3
Sansom, M.S.P.4
-
43
-
-
10044244661
-
Lipid-protein interactions of integral membrane proteins: A comparative simulation study
-
Deol, S. S., Bond, P. J., Domene, C., and Sansom, M. S. P. (2004) Lipid-protein interactions of integral membrane proteins: A comparative simulation study, Biophys. J. 87, 3737-3749.
-
(2004)
Biophys. J
, vol.87
, pp. 3737-3749
-
-
Deol, S.S.1
Bond, P.J.2
Domene, C.3
Sansom, M.S.P.4
-
44
-
-
33646168447
-
v Anionic phospholipids interactions with the potassium channel KcsA: Simulation studies
-
Deol, S. S., Domene, C., Bond, P. J., and Sansom, M. S. P. (2006) v Anionic phospholipids interactions with the potassium channel KcsA: Simulation studies, Biophys. J. 90, 822-830.
-
(2006)
Biophys. J
, vol.90
, pp. 822-830
-
-
Deol, S.S.1
Domene, C.2
Bond, P.J.3
Sansom, M.S.P.4
-
45
-
-
27844535720
-
Molecular simulations and lipid/protein interactions: Potassium channels and other membrane proteins
-
Sansom, M. S. P., Bond, P. J., Deol, S. D., Grottesi, A., Haider, S., and Sahds, Z. A. (2005) Molecular simulations and lipid/protein interactions: Potassium channels and other membrane proteins, Biochem. Soc. Trans. 33, 916-920.
-
(2005)
Biochem. Soc. Trans
, vol.33
, pp. 916-920
-
-
Sansom, M.S.P.1
Bond, P.J.2
Deol, S.D.3
Grottesi, A.4
Haider, S.5
Sahds, Z.A.6
-
46
-
-
0031757669
-
Multiple sequence alignment with Clustal X
-
Jeanmougin, F., Thompson, J. D., Gouy, M., Higgins, D. G., and Gibson, T. J. (1998) Multiple sequence alignment with Clustal X, Trends Biochem. Sci. 23, 403-405.
-
(1998)
Trends Biochem. Sci
, vol.23
, pp. 403-405
-
-
Jeanmougin, F.1
Thompson, J.D.2
Gouy, M.3
Higgins, D.G.4
Gibson, T.J.5
-
47
-
-
0027136282
-
Comparative protein modeling by satisfaction of spatial restraints
-
Sali, A., and Blundell, T. L. (1993) Comparative protein modeling by satisfaction of spatial restraints, J. Mol. Biol. 234, 779-815.
-
(1993)
J. Mol. Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
48
-
-
0033810049
-
Modeling of loops in protein structures
-
Fiser, A., Kinh Gian Do, R., and Sali, A. (2000) Modeling of loops in protein structures, Protein Sci. 9, 1753-1773.
-
(2000)
Protein Sci
, vol.9
, pp. 1753-1773
-
-
Fiser, A.1
Kinh Gian Do, R.2
Sali, A.3
-
49
-
-
0033873929
-
Comparative protein structure modelling of genes and genomes
-
Marti-Renom, M. A., Stuart, A., Fiser, A., Sanchez, R., Melo, F., and Sali, A. (2000) Comparative protein structure modelling of genes and genomes, Annu. Rev. Biophys. Biomol. Struct. 29, 291-325.
-
(2000)
Annu. Rev. Biophys. Biomol. Struct
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
Stuart, A.2
Fiser, A.3
Sanchez, R.4
Melo, F.5
Sali, A.6
-
50
-
-
0000243829
-
Procheck: A program to the stereochemical quality of protein structures
-
Laskowski, R. A., Macarthur, M. W., Moss, D. S., and Thornton, J. M. (1993) Procheck: A program to the stereochemical quality of protein structures, J. Appl. Crystallogr. 26, 283-291.
-
(1993)
J. Appl. Crystallogr
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
Macarthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
51
-
-
32844467750
-
A comparison between two prokaryotic potassium channels (KirBac1.1 and KcsA) in a molecular dynamics (MD) simulation study
-
Hellgren, M., Sandberg, L., and Edholm, O. (2006) A comparison between two prokaryotic potassium channels (KirBac1.1 and KcsA) in a molecular dynamics (MD) simulation study, Biophys. Chem. 120, 1-9.
-
(2006)
Biophys. Chem
, vol.120
, pp. 1-9
-
-
Hellgren, M.1
Sandberg, L.2
Edholm, O.3
-
52
-
-
0027995683
-
Detection, delineation, measurement and display of cavities in macromolecular structures
-
Kleywegt, G. J., and Jones, T. A. (1994) Detection, delineation, measurement and display of cavities in macromolecular structures, Acta Crystallogr. D50, 178-185.
-
(1994)
Acta Crystallogr
, vol.D50
, pp. 178-185
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
53
-
-
0036618993
-
Setup and optimisation of membrane protein simulations
-
Faraldo-Gómez, J. D., Smith, G. R., and Sansom, M. S. P. (2002) Setup and optimisation of membrane protein simulations, Eur. Biophys. J. 31, 217-227.
-
(2002)
Eur. Biophys. J
, vol.31
, pp. 217-227
-
-
Faraldo-Gómez, J.D.1
Smith, G.R.2
Sansom, M.S.P.3
-
54
-
-
84990424072
-
A consistent empirical potential for water-protein interactions
-
Hermans, J., Berendsen, H. J. C., van Gunsteren, W. F., and Postma, J. P. M. (1984) A consistent empirical potential for water-protein interactions, Biopolymers 23, 1513-1518.
-
(1984)
Biopolymers
, vol.23
, pp. 1513-1518
-
-
Hermans, J.1
Berendsen, H.J.C.2
van Gunsteren, W.F.3
Postma, J.P.M.4
-
55
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl, E., Hess, B., and van der Spoel, D. (2001) GROMACS 3.0: A package for molecular simulation and trajectory analysis, J. Mol. Model. 7, 306-317.
-
(2001)
J. Mol. Model
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
van der Spoel, D.3
-
56
-
-
0003831852
-
-
Biomos BV, Groningen, The Netherlands
-
van Gunsteren, W. F., and Berendsen, H. J. C. (1987) Gromos-87 manual, Biomos BV, Groningen, The Netherlands.
-
(1987)
Gromos-87 manual
-
-
van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
57
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H. J. C., Postma, J. P. M., van Gunsteren, W. F., DiNola, A., and Haak, J. R. (1984) Molecular dynamics with coupling to an external bath, J. Chem. Phys. 81, 3684-3690.
-
(1984)
J. Chem. Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
van Gunsteren, W.F.3
DiNola, A.4
Haak, J.R.5
-
58
-
-
33846823909
-
Particle mesh Ewald: An N.log(N) method for Ewald sums in large systems
-
Darden, T., York, D., and Pedersen, L. (1993) Particle mesh Ewald: An N.log(N) method for Ewald sums in large systems, J. Chem. Phys. 98, 10089-10092.
-
(1993)
J. Chem. Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
59
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann, U., Perera, L., Berkowitz, M. L., Darden, T., Lee, H., and Pedersen, L. G. (1995) A smooth particle mesh Ewald method, J. Chem. Phys. 103, 8577-8593.
-
(1995)
J. Chem. Phys
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
60
-
-
0000388705
-
LINCS: A linear constraint solver for molecular simulations
-
Hess, B., Bekker, H., Berendsen, H. J. C., and Fraaije, J. G. E. M. (1997) LINCS: A linear constraint solver for molecular simulations, J. Comput. Chem. 18, 1463-1472.
-
(1997)
J. Comput. Chem
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
61
-
-
0030404988
-
Hole: A program for the analysis of the pore dimensions of ion channel structural models
-
Smart, O. S., Neduvelil, J. G., Wang, X., Wallace, B. A., and Sansom, M. S. P. (1996) Hole: A program for the analysis of the pore dimensions of ion channel structural models, J. Mol. Graphics 14, 354-360.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 354-360
-
-
Smart, O.S.1
Neduvelil, J.G.2
Wang, X.3
Wallace, B.A.4
Sansom, M.S.P.5
-
62
-
-
0029878720
-
VMD: Visual Molecular Dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996) VMD: Visual Molecular Dynamics, J. Mol. Graphics 14, 33-38.
-
(1996)
J. Mol. Graphics 14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
64
-
-
0037186091
-
Diverse trafficking patterns due to multiple traffic motifs in G protein-activated inwardly rectifying potassium channels from brain and heart
-
Ma, D., Zerangue, N., Raab-Graham, K., Fried, S. R., Jan, Y. N., and Jan, L. Y. (2002) Diverse trafficking patterns due to multiple traffic motifs in G protein-activated inwardly rectifying potassium channels from brain and heart, Neuron 33, 715-729.
-
(2002)
Neuron
, vol.33
, pp. 715-729
-
-
Ma, D.1
Zerangue, N.2
Raab-Graham, K.3
Fried, S.R.4
Jan, Y.N.5
Jan, L.Y.6
-
65
-
-
0031436257
-
Probing the G-protein regulation of GIRK1 and GIRK4, the two subunits of the KACh channel, using functional homomeric mutants
-
Vivaudou, M., Chan, K. W., Sui, J. L., Jan, L. Y., Reuveny, E., and Logothetis, D. E. (1997) Probing the G-protein regulation of GIRK1 and GIRK4, the two subunits of the KACh channel, using functional homomeric mutants, J. Biol. Chem. 272, 31553-31560.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 31553-31560
-
-
Vivaudou, M.1
Chan, K.W.2
Sui, J.L.3
Jan, L.Y.4
Reuveny, E.5
Logothetis, D.E.6
-
66
-
-
28644435891
-
3-D structural and functional characterization of the purified KATP channel complex Kir6.2-SUR1
-
Mikhailov, M. V., Campbell, J., de Wet, H., Shimomura, K., Zadek, B., Collins, R. F., Sansom, M. S. P., Ford, R. C., and Ashcroft, F. M. (2005) 3-D structural and functional characterization of the purified KATP channel complex Kir6.2-SUR1, EMBO J. 24, 4166-4175.
-
(2005)
EMBO J
, vol.24
, pp. 4166-4175
-
-
Mikhailov, M.V.1
Campbell, J.2
de Wet, H.3
Shimomura, K.4
Zadek, B.5
Collins, R.F.6
Sansom, M.S.P.7
Ford, R.C.8
Ashcroft, F.M.9
-
68
-
-
0034284386
-
How proteins adapt to a membrane-water interface
-
Killian, J. A., and von Heijne, G. (2000) How proteins adapt to a membrane-water interface, Trends Biochem. Sci. 25, 429-434.
-
(2000)
Trends Biochem. Sci
, vol.25
, pp. 429-434
-
-
Killian, J.A.1
von Heijne, G.2
-
69
-
-
24644490119
-
Comparative analysis of amino acid distributions in integral membrane proteins from 107 genomes
-
Nilsson, J., Persson, B., and von Heijne, G. (2005) Comparative analysis of amino acid distributions in integral membrane proteins from 107 genomes, Proteins: Struct., Funct., Bioinf. 60, 606-616.
-
(2005)
Proteins: Struct., Funct., Bioinf
, vol.60
, pp. 606-616
-
-
Nilsson, J.1
Persson, B.2
von Heijne, G.3
-
70
-
-
0034027490
-
The kinetic and physical basis of K(ATP) channel gating: Toward a unified molecular understanding
-
Enkvetchakul, D., Loussouarn, G., Makhina, E., Shyng, S. L., and Nichols, C. G. (2000) The kinetic and physical basis of K(ATP) channel gating: Toward a unified molecular understanding, Biophys. J. 78, 2334-2348.
-
(2000)
Biophys. J
, vol.78
, pp. 2334-2348
-
-
Enkvetchakul, D.1
Loussouarn, G.2
Makhina, E.3
Shyng, S.L.4
Nichols, C.G.5
-
72
-
-
0035961071
-
A hydrophobic gating mechanism for nanopores
-
Beckstein, O., Biggin, P. C., and Sansom, M. S. P. (2001) A hydrophobic gating mechanism for nanopores, J. Phys. Chem. B 105, 12902-12905.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 12902-12905
-
-
Beckstein, O.1
Biggin, P.C.2
Sansom, M.S.P.3
-
73
-
-
0242405514
-
Ion channel gating: Insights via molecular simulations
-
Beckstein, O., Biggin, P. C., Bond, P. J., Bright, J. N., Domene, C., Grottesi, A., Holyoake, J., and Sansom, M. S. P. (2003) Ion channel gating: Insights via molecular simulations, FEBS Lett. 555, 85-90.
-
(2003)
FEBS Lett
, vol.555
, pp. 85-90
-
-
Beckstein, O.1
Biggin, P.C.2
Bond, P.J.3
Bright, J.N.4
Domene, C.5
Grottesi, A.6
Holyoake, J.7
Sansom, M.S.P.8
-
74
-
-
8844228899
-
Not ions alone: Barriers to ion permeation in nanopores and channels
-
Beckstein, O., Tai, K., and Sansom, M. S. P. (2004) Not ions alone: Barriers to ion permeation in nanopores and channels, J. Am. Chem. Soc. 126, 14694-14695.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 14694-14695
-
-
Beckstein, O.1
Tai, K.2
Sansom, M.S.P.3
-
77
-
-
33748288147
-
Mutations at the same residue (R50) of Kir6.2 (KCNJ11) produce different functional effects
-
Shimomura, K., Girard, C. A. J., Proks, P., Nazim, J., Lippiat, J. D., Cerutti, F., Lorini, R., Ellard, S., Hattersely, A., Barbetti, F., and Ashcroft, F. M. (2006) Mutations at the same residue (R50) of Kir6.2 (KCNJ11) produce different functional effects, Diabetes 55, 1705-1712.
-
(2006)
Diabetes
, vol.55
, pp. 1705-1712
-
-
Shimomura, K.1
Girard, C.A.J.2
Proks, P.3
Nazim, J.4
Lippiat, J.D.5
Cerutti, F.6
Lorini, R.7
Ellard, S.8
Hattersely, A.9
Barbetti, F.10
Ashcroft, F.M.11
-
78
-
-
25444504813
-
Membrane protein structure quality in molecular dynamics simulation
-
Law, R. J., Capener, C., Baaden, M., Bond, P. J., Campbell, J., Patargias, G., Arinaminpathy, Y., and Sansom, M. S. P. (2005) Membrane protein structure quality in molecular dynamics simulation, J. Mol. Graphics Modell. 24, 157-165.
-
(2005)
J. Mol. Graphics Modell
, vol.24
, pp. 157-165
-
-
Law, R.J.1
Capener, C.2
Baaden, M.3
Bond, P.J.4
Campbell, J.5
Patargias, G.6
Arinaminpathy, Y.7
Sansom, M.S.P.8
-
79
-
-
0042213113
-
+ channel in a bilayer membrane
-
+ channel in a bilayer membrane, Biophys. J. 78, 2900-2917.
-
(2000)
Biophys. J
, vol.78
, pp. 2900-2917
-
-
Bernèche, S.1
Roux, B.2
-
80
-
-
4344646741
-
KcsA closed and open: Modelling and simulation studies
-
Holyoake, J., Domene, C., Bright, J. N., and Sansom, M. S. P. (2003) KcsA closed and open: Modelling and simulation studies, Eur. Biophys. J. 33, 238-246.
-
(2003)
Eur. Biophys. J
, vol.33
, pp. 238-246
-
-
Holyoake, J.1
Domene, C.2
Bright, J.N.3
Sansom, M.S.P.4
-
82
-
-
17044400911
-
A gate in the selectivity filter of potassium channels
-
Bernèche, S., and Roux, B. (2005) A gate in the selectivity filter of potassium channels, Structure 13, 591-600.
-
(2005)
Structure
, vol.13
, pp. 591-600
-
-
Bernèche, S.1
Roux, B.2
-
84
-
-
0034036372
-
Simulations of ion permeation through a potassium channel: Molecular dynamics of KcsA in a phospholipid bilayer
-
Shrivastava, I. H., and Sansom, M. S. P. (2000) Simulations of ion permeation through a potassium channel: Molecular dynamics of KcsA in a phospholipid bilayer, Biophys. J. 78, 557-570.
-
(2000)
Biophys. J
, vol.78
, pp. 557-570
-
-
Shrivastava, I.H.1
Sansom, M.S.P.2
-
85
-
-
0037007814
-
MD Simulations of a K channel model: Sensitivity to changes in ions, waters and membrane environment
-
Capener, C. E., and Sansom, M. S. P. (2002) MD Simulations of a K channel model: Sensitivity to changes in ions, waters and membrane environment, J. Phys. Chem. B 106, 4543-4551.
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 4543-4551
-
-
Capener, C.E.1
Sansom, M.S.P.2
-
86
-
-
33745055845
-
Voltage-dependent gating at the KcsA selectivity filter
-
Cordero-Morales, J. F., Cuello, L. G., and Perozo, E. (2006) Voltage-dependent gating at the KcsA selectivity filter, Nat. Struct. Mol. Biol. 13, 319-322.
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 319-322
-
-
Cordero-Morales, J.F.1
Cuello, L.G.2
Perozo, E.3
-
87
-
-
33845637597
-
Phospholipids and the origin of cationic gating charges in voltage sensors
-
Schmidt, D., Jiang, Q. X., and MacKinnon, R. (2006) Phospholipids and the origin of cationic gating charges in voltage sensors, Nature 444, 775-779.
-
(2006)
Nature
, vol.444
, pp. 775-779
-
-
Schmidt, D.1
Jiang, Q.X.2
MacKinnon, R.3
-
88
-
-
0026729232
-
Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of X-ray and neutron diffraction data. III. Complete structure
-
Wiener, M. C., and White, S. H. (1992) Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of X-ray and neutron diffraction data. III. Complete structure, Biophys. J. 61, 434-447.
-
(1992)
Biophys. J
, vol.61
, pp. 434-447
-
-
Wiener, M.C.1
White, S.H.2
-
89
-
-
33645936978
-
+ channels: Regulation of bursting by the sulphonylurea receptor, PIP2 and regions of Kir6.2
-
+ channels: Regulation of bursting by the sulphonylurea receptor, PIP2 and regions of Kir6.2, J. Physiol. 571, 303-317.
-
(2006)
J. Physiol
, vol.571
, pp. 303-317
-
-
Ribalet, B.1
John, S.A.2
Xie, L.H.3
Weiss, J.N.4
-
90
-
-
1542327549
-
Activation of adenosine triphosphate-sensitive potassium channels by acyl coenzyme A esters involves multiple phosphatidylinositol 4,5-bisphosphate-interacting residues
-
Fox, J. E. M., Nichols, C. G., and Light, P. E. (2004) Activation of adenosine triphosphate-sensitive potassium channels by acyl coenzyme A esters involves multiple phosphatidylinositol 4,5-bisphosphate-interacting residues, Mol. Endocrinol. 18, 679-686.
-
(2004)
Mol. Endocrinol
, vol.18
, pp. 679-686
-
-
Fox, J.E.M.1
Nichols, C.G.2
Light, P.E.3
-
91
-
-
0142150045
-
Long-chain acyl-CoA esters and phosphatidylinositol phosphates modulate ATP inhibition of K-ATP channels by the same mechanism
-
Schulze, D., Rapedius, M., Krauter, T., and Baukrowitz, T. (2003) Long-chain acyl-CoA esters and phosphatidylinositol phosphates modulate ATP inhibition of K-ATP channels by the same mechanism, J. Physiol. 552, 357-367.
-
(2003)
J. Physiol
, vol.552
, pp. 357-367
-
-
Schulze, D.1
Rapedius, M.2
Krauter, T.3
Baukrowitz, T.4
-
92
-
-
26444584556
-
Two different conformational states of the KirBac3.1 potassium channel revealed by electron crystallography
-
Kuo, A. L., Domene, C., Johnson, L. N., Doyle, D. A., and Venien-Bryan, C. (2005) Two different conformational states of the KirBac3.1 potassium channel revealed by electron crystallography, Structure 13, 1463-1472.
-
(2005)
Structure
, vol.13
, pp. 1463-1472
-
-
Kuo, A.L.1
Domene, C.2
Johnson, L.N.3
Doyle, D.A.4
Venien-Bryan, C.5
-
93
-
-
33745714411
-
On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins
-
Forrest, L. R., Tang, C. L., and Honig, B. (2006) On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins, Biophys. J. 91, 508-517.
-
(2006)
Biophys. J
, vol.91
, pp. 508-517
-
-
Forrest, L.R.1
Tang, C.L.2
Honig, B.3
-
94
-
-
33748573642
-
The influence of geometry, surface character and flexibility on the permeation of ions and water through biological pores
-
Beckstein, O., and Sansom, M. S. P. (2004) The influence of geometry, surface character and flexibility on the permeation of ions and water through biological pores, Phys. Biol. 1, 42-52.
-
(2004)
Phys. Biol
, vol.1
, pp. 42-52
-
-
Beckstein, O.1
Sansom, M.S.P.2
-
95
-
-
10344261477
-
Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations
-
Faraldo-Gómez, J. D., Forrest, L. R., Baaden, M., Bond, P. J., Domene, C., Patargias, G., Cuthbertson, J., and Sansom, M. S. P. (2004) Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations, Proteins: Struct., Funct., Bioinf. 57, 783-791.
-
(2004)
Proteins: Struct., Funct., Bioinf
, vol.57
, pp. 783-791
-
-
Faraldo-Gómez, J.D.1
Forrest, L.R.2
Baaden, M.3
Bond, P.J.4
Domene, C.5
Patargias, G.6
Cuthbertson, J.7
Sansom, M.S.P.8
-
96
-
-
1642525904
-
Influence of artificial periodicity and ionic strength in molecular dynamics simulations of charged biomolecules employing lattice-sum methods
-
Kastenholz, M. A., and Hünenberger, P. H. (2004) Influence of artificial periodicity and ionic strength in molecular dynamics simulations of charged biomolecules employing lattice-sum methods, J. Phys. Chem. B 108, 774-788.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 774-788
-
-
Kastenholz, M.A.1
Hünenberger, P.H.2
-
97
-
-
33646134384
-
The influence of amino acid protonation states on molecular dynamics simulations of the bacterial porin OmpF
-
Varma, S., Chiu, S. W., and Jakobsson, E. (2006) The influence of amino acid protonation states on molecular dynamics simulations of the bacterial porin OmpF, Biophys. J. 90, 112-123.
-
(2006)
Biophys. J
, vol.90
, pp. 112-123
-
-
Varma, S.1
Chiu, S.W.2
Jakobsson, E.3
|