-
1
-
-
0030738589
-
Alternative respiratory pathways of Escherichia coli: Energetics and transcriptional regulation in response to electron acceptors
-
10.1016/S0005-2728(97)00034-0 9230919
-
Unden G Bongaerts J Alternative respiratory pathways of Escherichia coli: Energetics and transcriptional regulation in response to electron acceptors Biochim Biophys Acta 1997 1320 217-234 10.1016/ S0005-2728(97)00034-0 9230919
-
(1997)
Biochim Biophys Acta
, vol.1320
, pp. 217-234
-
-
Unden, G.1
Bongaerts, J.2
-
3
-
-
0030029817
-
DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen
-
Lazazzera BA Beinert H Khoroshilova N Kennedy MC Kiley PJ DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen J Biol Chem 1996 27 2762-2768
-
(1996)
J Biol Chem
, vol.27
, pp. 2762-2768
-
-
Lazazzera, B.A.1
Beinert, H.2
Khoroshilova, N.3
Kennedy, M.C.4
Kiley, P.J.5
-
4
-
-
0032457906
-
Oxygen sensing by the global regulator, FNR: The role of the iron-sulfur cluster
-
10.1111/j.1574-6976.1998.tb00375.x
-
Kiley PJ Beinert H Oxygen sensing by the global regulator, FNR: The role of the iron-sulfur cluster FEMS Microbiol Rev 1999 22 341-352 10.1111/ j.1574-6976.1998.tb00375.x
-
(1999)
FEMS Microbiol Rev
, vol.22
, pp. 341-352
-
-
Kiley, P.J.1
Beinert, H.2
-
6
-
-
0028265802
-
Repression of in vitro transcription of the Escherichia coli fnr and narX genes by FNR protein
-
10.1016/0014-5793(94)80173-8
-
Takahashi K Hattori T Nakanishi T Nohno T Fujita N Ishihama A Taniguchi S Repression of in vitro transcription of the Escherichia coli fnr and narX genes by FNR protein FEBS Lett 1996 340 59-64 10.1016/ 0014-5793(94)80173-8
-
(1996)
FEBS Lett
, vol.340
, pp. 59-64
-
-
Takahashi, K.1
Hattori, T.2
Nakanishi, T.3
Nohno, T.4
Fujita, N.5
Ishihama, A.6
Taniguchi, S.7
-
7
-
-
0028341746
-
Anaerobic activation of arcA transcription in Escherichia coli: Roles of Fnr and ArcA
-
10.1111/j.1365-2958.1994.tb00374.x 8022271
-
Compan I Touati D Anaerobic activation of arcA transcription in Escherichia coli: Roles of Fnr and ArcA Mol Microbiol 1994 11 955-964 10.1111/j.1365-2958.1994.tb00374.x 8022271
-
(1994)
Mol Microbiol
, vol.11
, pp. 955-964
-
-
Compan, I.1
Touati, D.2
-
8
-
-
0035933597
-
Quinones as the redox signal for the arc two-component system of bacteria
-
10.1126/science.1059361 11423658
-
Georgellis D Kwon O Lin EC Quinones as the redox signal for the arc two-component system of bacteria Science 2001 292 2314-2316 10.1126/ science.1059361 11423658
-
(2001)
Science
, vol.292
, pp. 2314-2316
-
-
Georgellis, D.1
Kwon, O.2
Lin, E.C.3
-
9
-
-
4444236656
-
Identification of a quinone-sensitive redox switch in the ArcB sensor kinase
-
10.1073/pnas.0403064101
-
Malpica R Franco B Rodriguez C Kwon O Georgellis D Identification of a quinone-sensitive redox switch in the ArcB sensor kinase Proc Natl Acad Sci USA 2004 101 11318-11323 10.1073/pnas.0403064101
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11318-11323
-
-
Malpica, R.1
Franco, B.2
Rodriguez, C.3
Kwon, O.4
Georgellis, D.5
-
10
-
-
18144411635
-
Structural analysis and solution studies of the activated regulatory domain of the response regulator ArcA: A symmetric dimer mediated by the alpha4-beta5-alpha5 face
-
10.1016/j.jmb.2005.03.059 15876365
-
Toro-Roman A Mack TR Stock AM Structural analysis and solution studies of the activated regulatory domain of the response regulator ArcA: A symmetric dimer mediated by the alpha4-beta5-alpha5 face J Mol Biol 2005 349 11-26 10.1016/j.jmb.2005.03.059 15876365
-
(2005)
J Mol Biol
, vol.349
, pp. 11-26
-
-
Toro-Roman, A.1
Mack, T.R.2
Stock, A.M.3
-
11
-
-
0035798619
-
Multimerization of phosphorylated and non-phosphorylated ArcA is necessary for the response regulator function of the Arc two-component signal transduction system
-
10.1074/jbc.M104855200 11527965
-
Jeon Y Lee YS Han JS Kim JB Hwang DS Multimerization of phosphorylated and non-phosphorylated ArcA is necessary for the response regulator function of the Arc two-component signal transduction system J Biol Chem 2001 276 40873-40879 10.1074/jbc.M104855200 11527965
-
(2001)
J Biol Chem
, vol.276
, pp. 40873-40879
-
-
Jeon, Y.1
Lee, Y.S.2
Han, J.S.3
Kim, J.B.4
Hwang, D.S.5
-
12
-
-
0029858049
-
Transcriptional control mediated by the ArcA two-component response regulator protein of Escherichia coli: Characterization of DNA binding at target promoters
-
178496 8892825
-
Lynch AS Lin EC Transcriptional control mediated by the ArcA two-component response regulator protein of Escherichia coli: characterization of DNA binding at target promoters J Bacteriol 1996 178 6238-6249 178496 8892825
-
(1996)
J Bacteriol
, vol.178
, pp. 6238-6249
-
-
Lynch, A.S.1
Lin, E.C.2
-
13
-
-
0024121496
-
arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways
-
279886 2964639 10.1073/pnas.85.6.1888
-
Iuchi S Lin EC arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways Proc Natl Acad Sci USA 1988 85 1888-1892 279886 2964639 10.1073/pnas.85.6.1888
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 1888-1892
-
-
Iuchi, S.1
Lin, E.C.2
-
15
-
-
0030868258
-
Differential regulation by the homologous response regulators NarL and NarP of Escherichia coli K-12 depends on DNA binding site arrangement
-
10.1046/j.1365-2958.1997.4971855.x 9302020
-
Darwin AJ Tyson KL Busby SJ Stewart V Differential regulation by the homologous response regulators NarL and NarP of Escherichia coli K-12 depends on DNA binding site arrangement Mol Microbiol 1997 25 583-595 10.1046/j.1365-2958.1997.4971855.x 9302020
-
(1997)
Mol Microbiol
, vol.25
, pp. 583-595
-
-
Darwin, A.J.1
Tyson, K.L.2
Busby, S.J.3
Stewart, V.4
-
16
-
-
0027251261
-
Dual response regulators (NarL and NarP) interact with dual sensors (NarX and NarQ) to control nitrate- and nitrite-regulated gene expression in Escherichia coli K-12
-
204722 8501030
-
Rabin RS Stewart V Dual response regulators (NarL and NarP) interact with dual sensors (NarX and NarQ) to control nitrate- and nitrite-regulated gene expression in Escherichia coli K-12 J Bacteriol 1993 175 3259-3268 204722 8501030
-
(1993)
J Bacteriol
, vol.175
, pp. 3259-3268
-
-
Rabin, R.S.1
Stewart, V.2
-
17
-
-
0030694514
-
Discrimination between structurally related ligands nitrate and nitrite controls autokinase activity of the NarX transmembrane signal transducer of Escherichia coli K-12
-
10.1046/j.1365-2958.1997.6262002.x 9426129
-
Williams SB Stewart V Discrimination between structurally related ligands nitrate and nitrite controls autokinase activity of the NarX transmembrane signal transducer of Escherichia coli K-12 Mol Microbiol 1997 26 911-925 10.1046/j.1365-2958.1997.6262002.x 9426129
-
(1997)
Mol Microbiol
, vol.26
, pp. 911-925
-
-
Williams, S.B.1
Stewart, V.2
-
18
-
-
0030739086
-
'Locked-on' and 'locked-off' signal transduction mutations in the periplasmic domain of the Escherichia coli NarQ and NarX sensors affect nitrate- and nitrite-dependent regulation by NarL and NarP
-
10.1046/j.1365-2958.1997.4131779.x 9220011
-
Chiang RC Cavicchioli R Gunsalus RP 'Locked-on' and 'locked-off' signal transduction mutations in the periplasmic domain of the Escherichia coli NarQ and NarX sensors affect nitrate- and nitrite-dependent regulation by NarL and NarP Mol Microbiol 1997 24 1049-1060 10.1046/ j.1365-2958.1997.4131779.x 9220011
-
(1997)
Mol Microbiol
, vol.24
, pp. 1049-1060
-
-
Chiang, R.C.1
Cavicchioli, R.2
Gunsalus, R.P.3
-
19
-
-
0029990165
-
Analysis of nitrate regulatory protein NarL-binding sites in the fdnG and narG operon control regions of Escherichia coli K-12
-
10.1046/j.1365-2958.1996.5491074.x 8736541
-
Darwin AJ Li J Stewart V Analysis of nitrate regulatory protein NarL-binding sites in the fdnG and narG operon control regions of Escherichia coli K-12 Mol Microbiol 1996 20 621-632 10.1046/ j.1365-2958.1996.5491074.x 8736541
-
(1996)
Mol Microbiol
, vol.20
, pp. 621-632
-
-
Darwin, A.J.1
Li, J.2
Stewart, V.3
-
20
-
-
0028023092
-
In vitro interaction of nitrate-responsive regulatory protein NarL with DNA target sequences in the fdnG, narG, narK and frdA operon control regions of Escherichia coli K-12
-
10.1006/jmbi.1994.1485 8057356
-
Li J Kustu S Stewart V In vitro interaction of nitrate-responsive regulatory protein NarL with DNA target sequences in the fdnG, narG, narK and frdA operon control regions of Escherichia coli K-12 J Mol Biol 1994 241 150-165 10.1006/jmbi.1994.1485 8057356
-
(1994)
J Mol Biol
, vol.241
, pp. 150-165
-
-
Li, J.1
Kustu, S.2
Stewart, V.3
-
21
-
-
0037377805
-
Synthetic lac operator substitutions for studying the nitrate- and nitrite-responsive NarX-NarL and NarQ-NarP two-component regulatory systems of Escherichia coli K-12
-
151514 12644479 10.1128/JB.185.7.2104-2111.2003
-
Stewart V Bledsoe PJ Synthetic lac operator substitutions for studying the nitrate- and nitrite-responsive NarX-NarL and NarQ-NarP two-component regulatory systems of Escherichia coli K-12 J Bacteriol 2003 185 2104-2111 151514 12644479 10.1128/JB.185.7.2104-2111.2003
-
(2003)
J Bacteriol
, vol.185
, pp. 2104-2111
-
-
Stewart, V.1
Bledsoe, P.J.2
-
22
-
-
0023906754
-
Nitrate respiration in relation to facultative metabolism in enterobacteria
-
373136 3045516
-
Stewart V Nitrate respiration in relation to facultative metabolism in enterobacteria Microbiol Rev 1988 52 190-232 373136 3045516
-
(1988)
Microbiol Rev
, vol.52
, pp. 190-232
-
-
Stewart, V.1
-
23
-
-
0037326468
-
Biochemical society special lecture. Nitrate- and nitrite-responsive sensors NarX and NarQ of proteobacteria
-
12546643
-
Stewart V Biochemical society special lecture. Nitrate- and nitrite-responsive sensors NarX and NarQ of proteobacteria Biochem Soc Trans 2003 31 1-10 12546643
-
(2003)
Biochem Soc Trans
, vol.31
, pp. 1-10
-
-
Stewart, V.1
-
24
-
-
27744536052
-
Regulation of nitrate and nitrite respiration in gammaproteobacteria: A comparative genomics study
-
16240717
-
Ravcheev DA Rakhmaninova AB Mironov AA Gelfand MS Regulation of nitrate and nitrite respiration in gammaproteobacteria: A comparative genomics study Mol Biol (Mosk) 2005 39 832-846 16240717
-
(2005)
Mol Biol (Mosk)
, vol.39
, pp. 832-846
-
-
Ravcheev, D.A.1
Rakhmaninova, A.B.2
Mironov, A.A.3
Gelfand, M.S.4
-
25
-
-
26444433328
-
Fnr-, NarP- and NarL-dependent regulation of transcription initiation from the Haemophilus influenzae Rd napF(Periplasmic Nitrate Reductase)
-
1251606 16199562 10.1128/JB.187.20.6928-6935.2005
-
Stewart V Bledsoe PJ Fnr-, NarP- and NarL-dependent regulation of transcription initiation from the Haemophilus influenzae Rd napF(Periplasmic Nitrate Reductase) J Bacteriol 2005 187 6928-6935 1251606 16199562 10.1128/JB.187.20.6928-6935.2005
-
(2005)
J Bacteriol
, vol.187
, pp. 6928-6935
-
-
Stewart, V.1
Bledsoe, P.J.2
-
26
-
-
11144354963
-
In silico metabolic model and protein expression of Haemophilus influenzae strain Rd KW20 in rich medium
-
10.1089/153623104773547471 15107235
-
Raghunathan A Price ND Galperin MY Makarova KS Purvine S Picone AF Cherny T Xie T Reilly TJ Munson RJr Tyler RE Akerley BJ Smith AL Palsson BO Kolker E In silico metabolic model and protein expression of Haemophilus influenzae strain Rd KW20 in rich medium OMICS 2004 8 25-41 10.1089/153623104773547471 15107235
-
(2004)
OMICS
, vol.8
, pp. 25-41
-
-
Raghunathan, A.1
Price, N.D.2
Galperin, M.Y.3
Makarova, K.S.4
Purvine, S.5
Picone, A.F.6
Cherny, T.7
Xie, T.8
Reilly, T.J.9
Munson Jr., R.10
Tyler, R.E.11
Akerley, B.J.12
Smith, A.L.13
Palsson, B.O.14
Kolker, E.15
-
27
-
-
0035513561
-
Computer analysis of regulatory signals in bacterial genomes. Fnr binding segments
-
11771123
-
Gerasimova AV Rodionov DA Mironov AA Gel'fand MS Computer analysis of regulatory signals in bacterial genomes. Fnr binding segments Mol Biol (Mosk) 2001 35 1001-1009 11771123
-
(2001)
Mol Biol (Mosk)
, vol.35
, pp. 1001-1009
-
-
Gerasimova, A.V.1
Rodionov, D.A.2
Mironov, A.A.3
Gel'fand, M.S.4
-
28
-
-
19544379737
-
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length
-
10.1093/bioinformatics/bti336 15728117
-
Favorov AV Gelfand MS Gerasimova AV Ravcheev DA Mironov AA Makeev VJ A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length Bioinformatics 2005 21 2240-2245 10.1093/bioinformatics/bti336 15728117
-
(2005)
Bioinformatics
, vol.21
, pp. 2240-2245
-
-
Favorov, A.V.1
Gelfand, M.S.2
Gerasimova, A.V.3
Ravcheev, D.A.4
Mironov, A.A.5
Makeev, V.J.6
-
31
-
-
0036786677
-
Dimerization allows DNA target site recognition by the NarL response regulator
-
10.1038/nsb845 12352954
-
Maris AE Sawaya MR Kaczor-Grzeskowiak M Jarvis MR Bearson SM Kopka ML Schroder I Gunsalus RP Dickerson RE Dimerization allows DNA target site recognition by the NarL response regulator Nat Struct Biol 2002 9 771-778 10.1038/nsb845 12352954
-
(2002)
Nat Struct Biol
, vol.9
, pp. 771-778
-
-
Maris, A.E.1
Sawaya, M.R.2
Kaczor-Grzeskowiak, M.3
Jarvis, M.R.4
Bearson, S.M.5
Kopka, M.L.6
Schroder, I.7
Gunsalus, R.P.8
Dickerson, R.E.9
-
32
-
-
0036785605
-
Site-specific DNA cleavage of synthetic NarL sites by an engineered Escherichia coli NarL protein-1,10-phenanthroline cleaving agent
-
10.1110/ps.0212502
-
Xiao G Cole DL Gunsalus RP Sigman DS Chen CH Site-specific DNA cleavage of synthetic NarL sites by an engineered Escherichia coli NarL protein-1,10-phenanthroline cleaving agent Protein Sci 2002 12 2427-2436 10.1110/ps.0212502
-
(2002)
Protein Sci
, vol.12
, pp. 2427-2436
-
-
Xiao, G.1
Cole, D.L.2
Gunsalus, R.P.3
Sigman, D.S.4
Chen, C.H.5
-
33
-
-
19544368668
-
ArcA regulator of gamma-proteobacteria: Identification of the binding signal and description of the regulon
-
Gerasimova AV Gelfand MS Makeev VY Mironov AA Favorov AV ArcA regulator of gamma-proteobacteria: Identification of the binding signal and description of the regulon Biophysics 2003 48 21-25
-
(2003)
Biophysics
, vol.48
, pp. 21-25
-
-
Gerasimova, A.V.1
Gelfand, M.S.2
Makeev, V.Y.3
Mironov, A.A.4
Favorov, A.V.5
-
35
-
-
0029842086
-
Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: Control by cell growth rate
-
178391 8824597
-
Kasimoglu E Park SJ Malek J Tseng CP Gunsalus RP Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: Control by cell growth rate J Bacteriol 1996 178 5563-5567 178391 8824597
-
(1996)
J Bacteriol
, vol.178
, pp. 5563-5567
-
-
Kasimoglu, E.1
Park, S.J.2
Malek, J.3
Tseng, C.P.4
Gunsalus, R.P.5
-
36
-
-
0043032584
-
Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR
-
10.1074/jbc.M213060200 12754220
-
Salmon K Hung SP Mekjian K Baldi P Hatfield GW Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR J Biol Chem 2003 278 29837-29855 10.1074/jbc.M213060200 12754220
-
(2003)
J Biol Chem
, vol.278
, pp. 29837-29855
-
-
Salmon, K.1
Hung, S.P.2
Mekjian, K.3
Baldi, P.4
Hatfield, G.W.5
-
37
-
-
17644381300
-
Global gene expression profiling in Escherichia coli K12: The effects of oxygen availability and ArcA
-
10.1074/jbc.M414030200 15699038
-
Salmon KA Hung SP Steffan NR Krupp R Baldi P Hatfield GW Gunsalus RP Global gene expression profiling in Escherichia coli K12: The effects of oxygen availability and ArcA J Biol Chem 2005 280 15084-15096 10.1074/ jbc.M414030200 15699038
-
(2005)
J Biol Chem
, vol.280
, pp. 15084-15096
-
-
Salmon, K.A.1
Hung, S.P.2
Steffan, N.R.3
Krupp, R.4
Baldi, P.5
Hatfield, G.W.6
Gunsalus, R.P.7
-
39
-
-
0032981401
-
Effects of changes in membrane sodium flux on virulence gene expression in Vibrio cholerae
-
15916 10077658 10.1073/pnas.96.6.3183
-
Hase CC Mekalanos JJ Effects of changes in membrane sodium flux on virulence gene expression in Vibrio cholerae Proc Natl Acad Sci USA 1999 96 3183-3187 15916 10077658 10.1073/pnas.96.6.3183
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 3183-3187
-
-
Hase, C.C.1
Mekalanos, J.J.2
-
40
-
-
0035342631
-
Recent progress in the Na(+)-translocating NADH-quinone reductase from the marine Vibrio alginolyticus
-
10.1016/S0005-2728(00)00275-9 11248187
-
Hayashi M Nakayama Y Unemoto T Recent progress in the Na(+ NADH-quinone reductase from the marine Vibrio alginolyticus Biochim Biophys Acta 2001 1505 37 44 10.1016/S0005-2728(00)00275-9 11248187
-
(2001)
Biochim Biophys Acta
, vol.1505
, pp. 37-44
-
-
Hayashi, M.1
Nakayama, Y.2
Unemoto, T.3
-
41
-
-
0028964294
-
Sequencing and the alignment of structural genes in the nqr operon encoding the Na(+)-translocating NADH-quinone reductase from Vibrio alginolyticus
-
10.1016/0014-5793(95)00283-F 7729558
-
Hayashi M Hirai K Unemoto T Sequencing and the alignment of structural genes in the nqr operon encoding the Na(+)-translocating NADH-quinone reductase from Vibrio alginolyticus FEBS Lett 1995 363 75-77 10.1016/ 0014-5793(95)00283-F 7729558
-
(1995)
FEBS Lett
, vol.363
, pp. 75-77
-
-
Hayashi, M.1
Hirai, K.2
Unemoto, T.3
-
42
-
-
0029972431
-
Existence of Na+-translocating NADH-quinone reductase in Haemophilus influenzae
-
10.1016/0014-5793(96)00114-7 8601449
-
Hayashi M Nakayama Y Unemoto T Existence of Na+-translocating NADH-quinone reductase in Haemophilus influenzae FEBS Lett 1996 381 174-176 10.1016/0014-5793(96)00114-7 8601449
-
(1996)
FEBS Lett
, vol.381
, pp. 174-176
-
-
Hayashi, M.1
Nakayama, Y.2
Unemoto, T.3
-
43
-
-
1842737600
-
The origin of the sodium-dependent NADH oxidation by the respiratory chain of Klebsiella pneumoniae
-
10.1016/S0014-5793(04)00312-6 15063750
-
Bertsova YV Bogachev AV The origin of the sodium-dependent NADH oxidation by the respiratory chain of Klebsiella pneumoniae FEBS Lett 2004 563 207-212 10.1016/S0014-5793(04)00312-6 15063750
-
(2004)
FEBS Lett
, vol.563
, pp. 207-212
-
-
Bertsova, Y.V.1
Bogachev, A.V.2
-
44
-
-
0029062019
-
Transcriptional regulation of the proton translocating NADH dehydrogenase genes (nuoA-N) of Escherichia coli by electron acceptors, electron donors and gene regulator
-
10.1111/j.1365-2958.1995.tb02416.x 7565112
-
Bongaerts J Zoske S Weidner U Unden G Transcriptional regulation of the proton translocating NADH dehydrogenase genes (nuoA-N) of Escherichia coli by electron acceptors, electron donors and gene regulator Mol Microbiol 1995 16 521-534 10.1111/j.1365-2958.1995.tb02416.x 7565112
-
(1995)
Mol Microbiol
, vol.16
, pp. 521-534
-
-
Bongaerts, J.1
Zoske, S.2
Weidner, U.3
Unden, G.4
-
45
-
-
2442473296
-
The Escherichia coli NADH:Ubiquinone oxidoreductase (complex I) is a primary proton pump but may be capable of secondary sodium antiport
-
10.1074/jbc.M311242200 14970214
-
Stolpe S Friedrich T The Escherichia coli NADH:uBiquinone oxidoreductase (complex I) is a primary proton pump but may be capable of secondary sodium antiport J Biol Chem 2004 279 18377-18383 10.1074/jbc.M311242200 14970214
-
(2004)
J Biol Chem
, vol.279
, pp. 18377-18383
-
-
Stolpe, S.1
Friedrich, T.2
-
46
-
-
0028294870
-
Organization and expression of the Escherichia coli K-12 dad operon encoding the smaller subunit of D-amino acid dehydrogenase and the catabolic alanine racemase
-
205218 7906689
-
Lobocka M Hennig J Wild J Klopotowski T Organization and expression of the Escherichia coli K-12 dad operon encoding the smaller subunit of D-amino acid dehydrogenase and the catabolic alanine racemase J Bacteriol 1994 176 1500-1510 205218 7906689
-
(1994)
J Bacteriol
, vol.176
, pp. 1500-1510
-
-
Lobocka, M.1
Hennig, J.2
Wild, J.3
Klopotowski, T.4
-
47
-
-
0033814270
-
The torYZ (yecK-bisZ) operon encodes a third respiratory trimethylamine N-oxide reductase in Escherichia coli
-
94700 11004177 10.1128/JB.182.20.5779-5786.2000
-
Gon S Patte JC Mejean V Iobbi-Nivol C The torYZ (yecK-bisZ) operon encodes a third respiratory trimethylamine N-oxide reductase in Escherichia coli J Bacteriol 2000 182 5779-5786 94700 11004177 10.1128/ JB.182.20.5779-5786.2000
-
(2000)
J Bacteriol
, vol.182
, pp. 5779-5786
-
-
Gon, S.1
Patte, J.C.2
Mejean, V.3
Iobbi-Nivol, C.4
-
48
-
-
0028198987
-
TMAO anaerobic respiration in Escherichia coli: Involvement of the tor operon
-
10.1111/j.1365-2958.1994.tb00393.x 8022286
-
Mejean V Iobbi-Nivol C Lepelletier M Giordano G Chippaux M Pascal MC TMAO anaerobic respiration in Escherichia coli: Involvement of the tor operon Mol Microbiol 1994 11 1169 1179 10.1111/ j.1365-2958.1994.tb00393.x 8022286
-
(1994)
Mol Microbiol
, vol.11
, pp. 1169-1179
-
-
Mejean, V.1
Iobbi-Nivol, C.2
Lepelletier, M.3
Giordano, G.4
Chippaux, M.5
Pascal, M.C.6
-
49
-
-
3042898935
-
The narL gene product activates the nitrate reductase operon and represses the fumarate reductase and trimethylamine N-oxide reductase operons in Escherichia coli
-
304984 3035558 10.1073/pnas.84.11.3901
-
Iuchi S Lin EC The narL gene product activates the nitrate reductase operon and represses the fumarate reductase and trimethylamine N-oxide reductase operons in Escherichia coli Proc Natl Acad Sci USA 1987 84 3901-3905 304984 3035558 10.1073/pnas.84.11.3901
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 3901-3905
-
-
Iuchi, S.1
Lin, E.C.2
-
50
-
-
0027959266
-
The torR gene of Escherichia coli encodes a response regulator protein involved in the expression of the trimethylamine N-oxide reductase genes
-
196761 8083154
-
Simon G Mejean V Jourlin C Chippaux M Pascal MC The torR gene of Escherichia coli encodes a response regulator protein involved in the expression of the trimethylamine N-oxide reductase genes J Bacteriol 1994 176 5601-5606 196761 8083154
-
(1994)
J Bacteriol
, vol.176
, pp. 5601-5606
-
-
Simon, G.1
Mejean, V.2
Jourlin, C.3
Chippaux, M.4
Pascal, M.C.5
-
51
-
-
0042389665
-
Coordinate regulation of the Escherichia coli formate dehydrogenase fdnGHI and fdhF genes in response to nitrate, nitrite, and formate: Roles for NarL and NarP
-
180993 12923080 10.1128/JB.185.17.5076-5085.2003
-
Wang H Gunsalus RP Coordinate regulation of the Escherichia coli formate dehydrogenase fdnGHI and fdhF genes in response to nitrate, nitrite, and formate: Roles for NarL and NarP J Bacteriol 2003 185 5076 5085 180993 12923080 10.1128/JB.185.17.5076-5085.2003
-
(2003)
J Bacteriol
, vol.185
, pp. 5076-5085
-
-
Wang, H.1
Gunsalus, R.P.2
-
52
-
-
0026625770
-
Localization of upstream sequence elements required for nitrate and anaerobic induction of fdn (formate dehydrogenase-N) operon expression in Escherichia coli K-12
-
206306 1629153
-
Li J Stewart V Localization of upstream sequence elements required for nitrate and anaerobic induction of fdn (formate dehydrogenase-N) operon expression in Escherichia coli K-12 J Bacteriol 1992 174 4935-4942 206306 1629153
-
(1992)
J Bacteriol
, vol.174
, pp. 4935-4942
-
-
Li, J.1
Stewart, V.2
-
53
-
-
0028860781
-
Expression and characterization of the Escherichia coli fdo locus and a possible physiological role for aerobic formate dehydrogenase
-
177593 8522521
-
Abaibou H Pommier J Benoit S Giordano G Mandrand-Berthelot MA Expression and characterization of the Escherichia coli fdo locus and a possible physiological role for aerobic formate dehydrogenase J Bacteriol 1995 177 7141-7149 177593 8522521
-
(1995)
J Bacteriol
, vol.177
, pp. 7141-7149
-
-
Abaibou, H.1
Pommier, J.2
Benoit, S.3
Giordano, G.4
Mandrand-Berthelot, M.A.5
-
54
-
-
0025074128
-
Identification and expression of the Escherichia coli fdhD and fdhE genes, which are involved in the formation of respiratory formate dehydrogenase
-
526937 2170340
-
Schlindwein C Giordano G Santini CL Mandrand MA Identification and expression of the Escherichia coli fdhD and fdhE genes, which are involved in the formation of respiratory formate dehydrogenase J Bacteriol 1990 172 6112-6121 526937 2170340
-
(1990)
J Bacteriol
, vol.172
, pp. 6112-6121
-
-
Schlindwein, C.1
Giordano, G.2
Santini, C.L.3
Mandrand, M.A.4
-
55
-
-
29044445103
-
Effect of oxygen, and ArcA and FNR regulators on the expression of genes related to the electron transfer chain and the TCA cycle in Escherichia coli
-
Shalel-Levanon S San KY Bennett GN Effect of oxygen, and ArcA and FNR regulators on the expression of genes related to the electron transfer chain and the TCA cycle in Escherichia coli Metab Eng 2005
-
(2005)
Metab Eng
-
-
Shalel-Levanon, S.1
San, K.Y.2
Bennett, G.N.3
-
56
-
-
27744565164
-
Effect of ArcA and FNR on the expression of genes related to the oxygen regulation and the glycolysis pathway in Escherichia coli under microaerobic growth conditions
-
10.1002/bit.20583 15988767
-
Shalel-Levanon S San KY Bennett GN Effect of ArcA and FNR on the expression of genes related to the oxygen regulation and the glycolysis pathway in Escherichia coli under microaerobic growth conditions Biotechnol Bioeng 2005 92 147-159 10.1002/bit.20583 15988767
-
(2005)
Biotechnol Bioeng
, vol.92
, pp. 147-159
-
-
Shalel-Levanon, S.1
San, K.Y.2
Bennett, G.N.3
-
60
-
-
0027275893
-
Coordinated regulation of amino sugar-synthesizing and -degrading enzymes in Escherichia coli K-12
-
204958 8349539
-
Plumbridge JA Cochet O Souza JM Altamirano MM Calcagno ML Badet B Coordinated regulation of amino sugar-synthesizing and -degrading enzymes in Escherichia coli K-12 J Bacteriol 1993 175 4951-4956 204958 8349539
-
(1993)
J Bacteriol
, vol.175
, pp. 4951-4956
-
-
Plumbridge, J.A.1
Cochet, O.2
Souza, J.M.3
Altamirano, M.M.4
Calcagno, M.L.5
Badet, B.6
-
61
-
-
0032420302
-
The gluconate high affinity transport of GntI in Escherichia coli involves a multicomponent complex system
-
10.1002/(SICI)1521-4028(199811)38:5/6<395::AID-JOBM395>3.0.CO;2-7 9871335
-
Porco A Alonso G Isturiz T The gluconate high affinity transport of GntI in Escherichia coli involves a multicomponent complex system J Basic Microbiol 1998 38 395-404 10.1002/(SICI)1521-4028(199811)38:5/ 6<395::AID-JOBM395>3.0.CO;2-7 9871335
-
(1998)
J Basic Microbiol
, vol.38
, pp. 395-404
-
-
Porco, A.1
Alonso, G.2
Isturiz, T.3
-
62
-
-
0027200708
-
Maltose and maltotriose can be formed endogenously in Escherichia coli from glucose and glucose-1-phosphate independently of enzymes of the maltose system
-
206624 8366051
-
Decker K Peist R Reidl J Kossmann M Brand B Boos W Maltose and maltotriose can be formed endogenously in Escherichia coli from glucose and glucose-1-phosphate independently of enzymes of the maltose system J Bacteriol 1993 175 5655-5665 206624 8366051
-
(1993)
J Bacteriol
, vol.175
, pp. 5655-5665
-
-
Decker, K.1
Peist, R.2
Reidl, J.3
Kossmann, M.4
Brand, B.5
Boos, W.6
-
63
-
-
9044240473
-
Coordinate genetic regulation of glycogen catabolism and biosynthesis in Escherichia coli via the CsrA gene product
-
177760 8576033
-
Yang H Liu MY Romeo T Coordinate genetic regulation of glycogen catabolism and biosynthesis in Escherichia coli via the CsrA gene product J Bacteriol 1996 178 1012-1017 177760 8576033
-
(1996)
J Bacteriol
, vol.178
, pp. 1012-1017
-
-
Yang, H.1
Liu, M.Y.2
Romeo, T.3
-
64
-
-
0037240787
-
A new Escherichia coli metabolic competency: Growth on fatty acids by a novel anaerobic beta-oxidation pathway
-
10.1046/j.1365-2958.2003.03341.x 12535077
-
Campbell JW Morgan-Kiss RM Cronan JE A new Escherichia coli metabolic competency: Growth on fatty acids by a novel anaerobic beta-oxidation pathway Mol Microbiol 2003 47 793-805 10.1046/j.1365-2958.2003.03341.x 12535077
-
(2003)
Mol Microbiol
, vol.47
, pp. 793-805
-
-
Campbell, J.W.1
Morgan-Kiss, R.M.2
Cronan, J.E.3
-
68
-
-
0042389541
-
FNR-mediated oxygen-responsive regulation of the nrdDG operon of Escherichia coli
-
180968 12923108 10.1128/JB.185.17.5310-5313.2003
-
Boston T Atlung T FNR-mediated oxygen-responsive regulation of the nrdDG operon of Escherichia coli J Bacteriol 2003 185 5310-5313 180968 12923108 10.1128/JB.185.17.5310-5313.2003
-
(2003)
J Bacteriol
, vol.185
, pp. 5310-5313
-
-
Boston, T.1
Atlung, T.2
-
69
-
-
0035945265
-
An architectural role of the Escherichia coli chromatin protein FIS in organising DNA
-
97572 11812843 10.1093/nar/29.24.5107
-
Schneider R Lurz R Luder G Tolksdorf C Travers A Muskhelishvili G An architectural role of the Escherichia coli chromatin protein FIS in organising DNA Nucleic Acids Res 2001 29 5107-5114 97572 11812843 10.1093/nar/29.24.5107
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 5107-5114
-
-
Schneider, R.1
Lurz, R.2
Luder, G.3
Tolksdorf, C.4
Travers, A.5
Muskhelishvili, G.6
-
70
-
-
22144488494
-
Integration of three signals at the Escherichia coli nrf promoter: A role for Fis protein in catabolite repression
-
10.1111/j.1365-2958.2005.04701.x 15978080
-
Browning DF Grainger DC Beatty CM Wolfe AJ Cole JA Busby SJ Integration of three signals at the Escherichia coli nrf promoter: A role for Fis protein in catabolite repression Mol Microbiol 2005 57 496-510 10.1111/ j.1365-2958.2005.04701.x 15978080
-
(2005)
Mol Microbiol
, vol.57
, pp. 496-510
-
-
Browning, D.F.1
Grainger, D.C.2
Beatty, C.M.3
Wolfe, A.J.4
Cole, J.A.5
Busby, S.J.6
-
71
-
-
1842557558
-
Transcription activation by remodelling of a nucleoprotein assembly: The role of NarL at the FNR-dependent Escherichia coli nir promoter
-
10.1111/j.1365-2958.2004.04104.x 15225315
-
Browning DF Cole JA Busby SJ Transcription activation by remodelling of a nucleoprotein assembly: The role of NarL at the FNR-dependent Escherichia coli nir promoter Mol Microbiol 2004 53 203-215 10.1111/ j.1365-2958.2004.04104.x 15225315
-
(2004)
Mol Microbiol
, vol.53
, pp. 203-215
-
-
Browning, D.F.1
Cole, J.A.2
Busby, S.J.3
-
72
-
-
1242341344
-
Regulation of ndh expression in Escherichia coli by Fis
-
10.1099/mic.0.26869-0 14766919
-
Jackson L Blake T Green J Regulation of ndh expression in Escherichia coli by Fis Microbiology 2004 150 407-413 10.1099/mic.0.26869-0 14766919
-
(2004)
Microbiology
, vol.150
, pp. 407-413
-
-
Jackson, L.1
Blake, T.2
Green, J.3
-
73
-
-
0040875615
-
Regulation of expression of the adhE gene, encoding ethanol oxidoreductase in Escherichia coli: Transcription from a downstream promoter and regulation by fnr and RpoS
-
94216 10601216
-
Membrillo-Hernandez J Lin EC Regulation of expression of the adhE gene, encoding ethanol oxidoreductase in Escherichia coli: Transcription from a downstream promoter and regulation by fnr and RpoS J Bacteriol 1999 181 7571-7579 94216 10601216
-
(1999)
J Bacteriol
, vol.181
, pp. 7571-7579
-
-
Membrillo-Hernandez, J.1
Lin, E.C.2
-
74
-
-
0031815910
-
Downregulation of Escherichia coli yfiD expression by FNR occupying a site at -93.5 involves the AR1-containing face of FNR
-
10.1046/j.1365-2958.1998.01002.x 9767578
-
Green J Baldwin ML Richardson J Downregulation of Escherichia coli yfiD expression by FNR occupying a site at -93.5 involves the AR1-containing face of FNR Mol Microbiol 1998 29 1113-1123 10.1046/ j.1365-2958.1998.01002.x 9767578
-
(1998)
Mol Microbiol
, vol.29
, pp. 1113-1123
-
-
Green, J.1
Baldwin, M.L.2
Richardson, J.3
-
75
-
-
0031692138
-
Transcription and transcript processing in the sdhCDAB-sucABCD operon of Escherichia coli
-
9720032
-
Cunningham L Guest JR Transcription and transcript processing in the sdhCDAB-sucABCD operon of Escherichia coli Microbiology 1998 144 2113-2123 9720032
-
(1998)
Microbiology
, vol.144
, pp. 2113-2123
-
-
Cunningham, L.1
Guest, J.R.2
-
76
-
-
0031438608
-
Transcriptional regulation of the aconitase genes (acnA and acnB) of Escherichia coli
-
9421904
-
Cunningham L Gruer MJ Guest JR Transcriptional regulation of the aconitase genes (acnA and acnB) of Escherichia coli Microbiology 1997 143 3795-3805 9421904
-
(1997)
Microbiology
, vol.143
, pp. 3795-3805
-
-
Cunningham, L.1
Gruer, M.J.2
Guest, J.R.3
-
77
-
-
0026545675
-
Regulation of narK gene expression in Escherichia coli in response to anaerobiosis, nitrate, iron, and molybdenum
-
207399 1429433
-
Kolesnikow T Schroder I Gunsalus RP Regulation of narK gene expression in Escherichia coli in response to anaerobiosis, nitrate, iron, and molybdenum J Bacteriol 1992 174 7104-71011 207399 1429433
-
(1992)
J Bacteriol
, vol.174
, pp. 7104-71011
-
-
Kolesnikow, T.1
Schroder, I.2
Gunsalus, R.P.3
-
78
-
-
0026569267
-
The E.coli fis promoter is subject to stringent control and autoregulation
-
556548 1547773
-
Ninnemann O Koch C Kahmann R The E.coli fis promoter is subject to stringent control and autoregulation EMBO J 1992 11 1075-1083 556548 1547773
-
(1992)
EMBO J
, vol.11
, pp. 1075-1083
-
-
Ninnemann, O.1
Koch, C.2
Kahmann, R.3
-
79
-
-
19944402536
-
Envelope stress responses and Gram-negative bacterial pathogenesis
-
10.1111/j.1365-2958.2005.04625.x 15882407
-
Raivio TL Envelope stress responses and Gram-negative bacterial pathogenesis Mol Microbiol 2005 56 1119-1128 10.1111/ j.1365-2958.2005.04625.x 15882407
-
(2005)
Mol Microbiol
, vol.56
, pp. 1119-1128
-
-
Raivio, T.L.1
-
80
-
-
0024595996
-
Differentiation of arcA, arcB, and cpxA mutant phenotypes of Escherichia coli by sex pilus formation and enzyme regulation
-
209982 2565334
-
Iuchi S Furlong D Lin EC Differentiation of arcA, arcB, and cpxA mutant phenotypes of Escherichia coli by sex pilus formation and enzyme regulation J Bacteriol 1989 171 2889-2893 209982 2565334
-
(1989)
J Bacteriol
, vol.171
, pp. 2889-2893
-
-
Iuchi, S.1
Furlong, D.2
Lin, E.C.3
-
81
-
-
0342333739
-
OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteins
-
287162 2471187 10.1073/pnas.86.10.3484
-
Christman MF Storz G Ames BN OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteins Proc Natl Acad Sci USA 1989 86 3484-3488 287162 2471187 10.1073/pnas.86.10.3484
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 3484-3488
-
-
Christman, M.F.1
Storz, G.2
Ames, B.N.3
-
82
-
-
0023664923
-
Ferric uptake regulation protein acts as a repressor, employing iron (II) as a cofactor to bind the operator of an iron transport operon in Escherichia coli
-
10.1021/bi00391a039 2823881
-
Bagg A Neilands JB Ferric uptake regulation protein acts as a repressor, employing iron (II) as a cofactor to bind the operator of an iron transport operon in Escherichia coli Biochemistry 1987 26 5471-5477 10.1021/bi00391a039 2823881
-
(1987)
Biochemistry
, vol.26
, pp. 5471-5477
-
-
Bagg, A.1
Neilands, J.B.2
-
84
-
-
0029030757
-
Expression of the narX, narL, narP, and narQ genes of Escherichia coli K-12: Regulation of the regulators
-
177108 7601854
-
Darwin AJ Stewart V Expression of the narX, narL, narP, and narQ genes of Escherichia coli K-12: Regulation of the regulators J Bacteriol 1995 177 3865-3869 177108 7601854
-
(1995)
J Bacteriol
, vol.177
, pp. 3865-3869
-
-
Darwin, A.J.1
Stewart, V.2
-
85
-
-
19944373776
-
Anaerobic regulation by an atypical Arc system in Shewanella oneidensis
-
10.1111/j.1365-2958.2005.04628.x 15882425
-
Gralnick JA Brown CT Newman DK Anaerobic regulation by an atypical Arc system in Shewanella oneidensis Mol Microbiol 2005 56 1347-1357 10.1111/ j.1365-2958.2005.04628.x 15882425
-
(2005)
Mol Microbiol
, vol.56
, pp. 1347-1357
-
-
Gralnick, J.A.1
Brown, C.T.2
Newman, D.K.3
-
86
-
-
0034924899
-
Haemophilus ducreyi inhibits phagocytosis by U-937 cells, a human macrophage-like cell line
-
98558 11447144 10.1128/IAI.69.8.4726-4733.2001
-
Wood GE Dutro SM Totten PA Haemophilus ducreyi inhibits phagocytosis by U-937 cells, a human macrophage-like cell line Infect Immun 2001 69 4726-4733 98558 11447144 10.1128/IAI.69.8.4726-4733.2001
-
(2001)
Infect Immun
, vol.69
, pp. 4726-4733
-
-
Wood, G.E.1
Dutro, S.M.2
Totten, P.A.3
-
89
-
-
0032803976
-
The Yersinia enterocolitica pYV virulence plasmid contains multiple intrinsic DNA bends which melt at 37 degrees C
-
93920 10400576
-
Rohde JR Luan XS Rohde H Foxm JM Minnich SA The Yersinia enterocolitica pYV virulence plasmid contains multiple intrinsic DNA bends which melt at 37 degrees C J Bacteriol 1999 181 4198-4204 93920 10400576
-
(1999)
J Bacteriol
, vol.181
, pp. 4198-4204
-
-
Rohde, J.R.1
Luan, X.S.2
Rohde, H.3
Foxm, J.M.4
Minnich, S.A.5
-
90
-
-
33748042966
-
Role of polymorphonuclear leukocyte-derived serine proteinases in defense against Actinobacillus actinomycetemcomitans
-
10.1128/IAI.02016-05
-
de Haar SF Hiemstra PS van Steenbergen MT Everts V Beertsen W Role of polymorphonuclear leukocyte-derived serine proteinases in defense against Actinobacillus actinomycetemcomitans Infect Immun 2006 9 5284-5291 10.1128/IAI.02016-05
-
(2006)
Infect Immun
, vol.9
, pp. 5284-5291
-
-
de Haar, S.F.1
Hiemstra, P.S.2
van Steenbergen, M.T.3
Everts, V.4
Beertsen, W.5
-
91
-
-
2342499980
-
Mutations in Haemophilus influenzae mismatch repair genes increase mutation rates of dinucleotide repeat tracts but not dinucleotide repeat-driven pilin phase variation rates
-
400628 15126452 10.1128/JB.186.10.2928-2935.2004
-
Bayliss CD Sweetman WA Moxon ER Mutations in Haemophilus influenzae mismatch repair genes increase mutation rates of dinucleotide repeat tracts but not dinucleotide repeat-driven pilin phase variation rates J Bacteriol 2004 186 2928-2935 400628 15126452 10.1128/ JB.186.10.2928-2935.2004
-
(2004)
J Bacteriol
, vol.186
, pp. 2928-2935
-
-
Bayliss, C.D.1
Sweetman, W.A.2
Moxon, E.R.3
-
92
-
-
0028938851
-
Evidence that water transmits Vibrio vulnificus biotype 2 infections to eels
-
167367 7793914
-
Amaro C Biosca EG Fouz B Alcaide E Esteve C Evidence that water transmits Vibrio vulnificus biotype 2 infections to eels Appl Environ Microbiol 1995 61 1133-1137 167367 7793914
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 1133-1137
-
-
Amaro, C.1
Biosca, E.G.2
Fouz, B.3
Alcaide, E.4
Esteve, C.5
-
94
-
-
0035378336
-
Genotypes associated with virulence in environmental isolates of Vibrio cholerae
-
92890 11375146 10.1128/AEM.67.6.2421-2429.2001
-
Rivera IN Chun J Huq A Sack RB Colwell RR Genotypes associated with virulence in environmental isolates of Vibrio cholerae Appl Environ Microbiol 2001 67 2421-2429 92890 11375146 10.1128/ AEM.67.6.2421-2429.2001
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2421-2429
-
-
Rivera, I.N.1
Chun, J.2
Huq, A.3
Sack, R.B.4
Colwell, R.R.5
-
95
-
-
4344568725
-
The winnowing: Establishing the squid-vibrio symbiosis
-
10.1038/nrmicro957
-
Nyholm SV McFall-Ngai MJ The winnowing: Establishing the squid-vibrio symbiosis Nat Rev Microbial 2004 2 632-642 10.1038/nrmicro957
-
(2004)
Nat Rev Microbial
, vol.2
, pp. 632-642
-
-
Nyholm, S.V.1
McFall-Ngai, M.J.2
-
96
-
-
0345689429
-
Response to culture aeration mediated by the nitrate and nitrite sensor NarQ of Escherichia coli K-12
-
10.1046/j.1365-2958.2003.03776.x 14622424
-
Stewart V Chen LL Wu HC Response to culture aeration mediated by the nitrate and nitrite sensor NarQ of Escherichia coli K-12 Mol Microbiol 2003 50 1391-1399 10.1046/j.1365-2958.2003.03776.x 14622424
-
(2003)
Mol Microbiol
, vol.50
, pp. 1391-1399
-
-
Stewart, V.1
Chen, L.L.2
Wu, H.C.3
-
97
-
-
85044710067
-
Dissimilatory metabolism of nitrogen oxides in bacteria: Comparative reconstruction of transcriptional networks
-
1274295 16261196 10.1371/journal.pcbi.0010055
-
Rodionov DA Dubchak IL Arkin AP Alm EJ Gelfand MS Dissimilatory metabolism of nitrogen oxides in bacteria: Comparative reconstruction of transcriptional networks PLoS Comput Biol 2005 1 e55 1274295 16261196 10.1371/journal.pcbi.0010055
-
(2005)
PLoS Comput Biol
, vol.1
-
-
Rodionov, D.A.1
Dubchak, I.L.2
Arkin, A.P.3
Alm, E.J.4
Gelfand, M.S.5
-
98
-
-
33845971293
-
Comparative reconstruction of transcriptional network controlling iron and manganese homeostasis in alpha-proteobacteria
-
1698941 17173478 10.1371/journal.pcbi.0020163
-
Rodionov DA Gelfand MS Todd JD Curson AR Johnston AW Comparative reconstruction of transcriptional network controlling iron and manganese homeostasis in alpha-proteobacteria PLoS Comput Biol 2006 2 e163 1698941 17173478 10.1371/journal.pcbi.0020163
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Rodionov, D.A.1
Gelfand, M.S.2
Todd, J.D.3
Curson, A.R.4
Johnston, A.W.5
-
99
-
-
0036330894
-
Genome sequence of Yersinia pestis KIM
-
135232 12142430 10.1128/JB.184.16.4601-4611.2002
-
Deng W Burland V Plunkett G Boutin A Mayhew GF Liss P Perna NT Rose DJ Mau B Zhou S Schwartz DC Fetherston JD Lindler LE Brubaker RR Plano GV Straley SC McDonough KA Nilles ML Matson JS Blattner FR Perry RD Genome sequence of Yersinia pestis KIM J Bacteriol 2002 184 4601-4611 135232 12142430 10.1128/JB.184.16.4601-4611.2002
-
(2002)
J Bacteriol
, vol.184
, pp. 4601-4611
-
-
Deng, W.1
Burland, V.2
Plunkett, G.3
Boutin, A.4
Mayhew, G.F.5
Liss, P.6
Perna, N.T.7
Rose, D.J.8
Mau, B.9
Zhou, S.10
Schwartz, D.C.11
Fetherston, J.D.12
Lindler, L.E.13
Brubaker, R.R.14
Plano, G.V.15
Straley, S.C.16
McDonough, K.A.17
Nilles, M.L.18
Matson, J.S.19
Blattner, F.R.20
Perry, R.D.21
more..
-
100
-
-
0035853112
-
Complete genomic sequence of Pasteurella multocida, Pm70
-
30675 11248100 10.1073/pnas.051634598
-
May BJ Zhang Q Li LL Paustian ML Whittam TS Kapur V Complete genomic sequence of Pasteurella multocida, Pm70 Proc Natl Acad Sci USA 2001 98 3460-3465 30675 11248100 10.1073/pnas.051634598
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 3460-3465
-
-
May, B.J.1
Zhang, Q.2
Li, L.L.3
Paustian, M.L.4
Whittam, T.S.5
Kapur, V.6
-
101
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
10.1126/science.7542800 7542800
-
Fleischmann RD Adams MD White O Clayton RA Kirkness EF Kerlavage AR Bult CJ Tomb JF Dougherty BA Merrick JM McKenney K Sutton GG FitzHugh W Fields CA Gocayne JD Scott JD Shirley R Liu LI Glodek A Kelley JM Weidman JF Phillips CA Spriggs T Hedblom E Cotton MD Utterback T Hanna MC Nguyen DT Saudek DM Brandon RC Fine LD Fritchman JL Fuhrmann JL Geoghagen NS Gnehm CL McDonald LA Small KV Fraser CM Smith HO Venter JC Whole-genome random sequencing and assembly of Haemophilus influenzae Rd Science 1995 269 496-512 10.1126/science.7542800 7542800
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
Bult, C.J.7
Tomb, J.F.8
Dougherty, B.A.9
Merrick, J.M.10
McKenney, K.11
Sutton, G.G.12
FitzHugh, W.13
Fields, C.A.14
Gocayne, J.D.15
Scott, J.D.16
Shirley, R.17
Liu, L.I.18
Glodek, A.19
Kelley, J.M.20
Weidman, J.F.21
Phillips, C.A.22
Spriggs, T.23
Hedblom, E.24
Cotton, M.D.25
Utterback, T.26
Hanna, M.C.27
Nguyen, D.T.28
Saudek, D.M.29
Brandon, R.C.30
Fine, L.D.31
Fritchman, J.L.32
Fuhrmann, J.L.33
Geoghagen, N.S.34
Gnehm, C.L.35
McDonald, L.A.36
Small, K.V.37
Fraser, C.M.38
Smith, H.O.39
Venter, J.C.40
more..
-
102
-
-
0141781023
-
Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients
-
201039 14500463 10.1128/IAI.71.10.5461-5471.2003
-
Kim YR Lee SE Kim CM Kim SY Shin EK Shin DH Chung SS Choy HE Progulske-Fox A Hillman JD Handfield M Rhee JH Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients Infect Immun 2003 71 5461-5471 201039 14500463 10.1128/IAI.71.10.5461-5471.2003
-
(2003)
Infect Immun
, vol.71
, pp. 5461-5471
-
-
Kim, Y.R.1
Lee, S.E.2
Kim, C.M.3
Kim, S.Y.4
Shin, E.K.5
Shin, D.H.6
Chung, S.S.7
Choy, H.E.8
Progulske-Fox, A.9
Hillman, J.D.10
Handfield, M.11
Rhee, J.H.12
-
103
-
-
0037333881
-
Genome sequence of Vibrio parahaemolyticus: A pathogenic mechanism distinct from that of V. cholerae
-
10.1016/S0140-6736(03)12659-1 12620739
-
Makino K Oshima K Kurokawa K Yokoyama K Uda T Tagomori K Iijima Y Najima M Nakano M Yamashita A Kubota YKSYT Honda T Shinagawa H Hattori M Iida T Genome sequence of Vibrio parahaemolyticus: A pathogenic mechanism distinct from that of V. cholerae Lancet 2003 361 743-749 10.1016/ S0140-6736(03)12659-1 12620739
-
(2003)
Lancet
, vol.361
, pp. 743-749
-
-
Makino, K.1
Oshima, K.2
Kurokawa, K.3
Yokoyama, K.4
Uda, T.5
Tagomori, K.6
Iijima, Y.7
Najima, M.8
Nakano, M.9
Yamashita, A.10
Kubota, Y.K.S.Y.T.11
Honda, T.12
Shinagawa, H.13
Hattori, M.14
Iida, T.15
-
104
-
-
17144462135
-
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
-
10.1038/35020000 10952301
-
Heidelberg JF Eisen JA Nelson WC Clayton RA Gwinn ML Dodson RJ Haft DH Hickey EK Peterson JD Umayam LA Gill SR Nelson KE Read TD Tettelin H Richardson D Ermolaeva MD Vamathevan J Bass S Qin H Dragoi I Sellers P McDonald L Utterback T Fleishmann RD Nierman WC White O Salzberg SL Smith HO Colwell RR Mekalanos JJ Venter JC Fraser CM DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae Nature 2000 406 477-483 10.1038/35020000 10952301
-
(2000)
Nature
, vol.406
, pp. 477-483
-
-
Heidelberg, J.F.1
Eisen, J.A.2
Nelson, W.C.3
Clayton, R.A.4
Gwinn, M.L.5
Dodson, R.J.6
Haft, D.H.7
Hickey, E.K.8
Peterson, J.D.9
Umayam, L.A.10
Gill, S.R.11
Nelson, K.E.12
Read, T.D.13
Tettelin, H.14
Richardson, D.15
Ermolaeva, M.D.16
Vamathevan, J.17
Bass, S.18
Qin, H.19
Dragoi, I.20
Sellers, P.21
McDonald, L.22
Utterback, T.23
Fleishmann, R.D.24
Nierman, W.C.25
White, O.26
Salzberg, S.L.27
Smith, H.O.28
Colwell, R.R.29
Mekalanos, J.J.30
Venter, J.C.31
Fraser, C.M.32
more..
-
105
-
-
20044369348
-
Complete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congeners
-
549501 15703294 10.1073/pnas.0409900102
-
Ruby EG Urbanowski M Campbell J Dunn A Faini M Gunsalus R Lostroh P Lupp C McCann J Millikan D Schaefer A Stabb E Stevens A Visick K Whistler C Greenberg EP Complete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congeners Proc Natl Acad Sci USA 2005 102 3004-3009 549501 15703294 10.1073/pnas.0409900102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 3004-3009
-
-
Ruby, E.G.1
Urbanowski, M.2
Campbell, J.3
Dunn, A.4
Faini, M.5
Gunsalus, R.6
Lostroh, P.7
Lupp, C.8
McCann, J.9
Millikan, D.10
Schaefer, A.11
Stabb, E.12
Stevens, A.13
Visick, K.14
Whistler, C.15
Greenberg, E.P.16
-
106
-
-
33847653945
-
-
GenBank Overview
-
GenBank Overview http://www.ncbi.nlm.nih.gov/Genbank
-
-
-
-
107
-
-
33847642710
-
-
The Wellcome Trust Sanger Institute
-
The Wellcome Trust Sanger Institute http://www.sanger.ac.uk
-
-
-
-
108
-
-
33847645534
-
-
The University of Oklahoma's Advanced Center for Genome Technology
-
The University of Oklahoma's Advanced Center for Genome Technology http://www.genome.ou.edu
-
-
-
-
109
-
-
0034141782
-
Prediction of transcription regulatory sites in Archaea by a comparative genomic approach
-
102549 10637320 10.1093/nar/28.3.695
-
Gelfand MS Koonin EV Mironov AA Prediction of transcription regulatory sites in Archaea by a comparative genomic approach Nucleic Acids Res 2000 28 695-705 102549 10637320 10.1093/nar/28.3.695
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 695-705
-
-
Gelfand, M.S.1
Koonin, E.V.2
Mironov, A.A.3
-
110
-
-
3543068251
-
Regulog analysis: Detection of conserved regulatory networks across bacteria: Application to Staphylococcus aureus
-
442153 15231752 10.1101/gr.2242604
-
Alkema WB Lenhard B Wasserman WW Regulog analysis: Detection of conserved regulatory networks across bacteria: Application to Staphylococcus aureus Genome Res 2004 14 1362-1373 442153 15231752 10.1101/gr.2242604
-
(2004)
Genome Res
, vol.14
, pp. 1362-1373
-
-
Alkema, W.B.1
Lenhard, B.2
Wasserman, W.W.3
-
111
-
-
33847667011
-
-
DPInteract
-
DPInteract http://arep.med.harvard.edu/dpinteract
-
-
-
-
113
-
-
0030660581
-
A genomic perspective on protein families
-
10.1126/science.278.5338.631 9381173
-
Tatusov RJ Koonin EV Lipman DJ A genomic perspective on protein families Science 1997 278 631-637 10.1126/science.278.5338.631 9381173
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.J.1
Koonin, E.V.2
Lipman, D.J.3
-
114
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
147148 9396791 10.1093/nar/25.24.4876
-
Thompson JD Gibson TJ Plewniak F Jeanmougin F Higgins DG The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 1997 25 4876-4882 147148 9396791 10.1093/nar/25.24.4876
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
|