Genome sequence of Vibrio parahaemolyticus: A pathogenic mechanism distinct from that of V cholerae

Lancet

Volumn 361, Issue 9359, 2003, Pages 743-749

  Makino, Kozo ^a   Oshima, Kenshiro ^c,d   Kurokawa, Ken ^b   Yokoyama, Katsushi ^a   Uda, Takayuki ^a   Tagomori, Kenichi ^a   Iijima, Yoshio ^e   Najima, Masatomo ^b   Nakano, Masayuki ^a   Yamashita, Atsushi ^c   Kubota, Yoshino ^a   Kimura, Shigenobu ^a   Yasunaga, Teruo ^b   Honda, Takeshi ^a   Shinagawa, Hideo ^a   Hattori, Masahira ^c,f   Iida, Tetsuya ^a,b  

^a OSAKA UNIVERSITY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

^c KITASATO UNIVERSITY   (Japan)

^d HITACHI LTD   (Japan)

^e KOBE INSTITUTE OF HEALTH   (Japan)

^f RIKEN YOKOHAMA INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; CHROMOSOME; COMPARATIVE STUDY; GENE REARRANGEMENT; GENE SEQUENCE; GENETIC CODE; GENETIC STRAIN; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; VIBRIO CHOLERAE; VIBRIO PARAHAEMOLYTICUS;

ESCHERICHIA COLI; VIBRIO CHOLERAE; VIBRIO PARAHAEMOLYTICUS;

EID: 0037333881     PISSN: 01406736     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0140-6736(03)12659-1     Document Type: Article

References (30)

1. Fujino T., Okuno Y., Nakada D., et al. On the bacteriological examination of shirasu-food poisoning. Med J Osaka Univ. 4:1953;299-304.
2. Joseph S.W., Colwell R.R., Kaper J.B. Vibrio parahaemolyticus and related halophilic vibrios. Crit Rev Microbiol. 10:1982;77-124.
3. Chowdhury N.R., Chakraborty S., Ramamurthy T., et al. Molecular evidence of clonal Vibrio parahaemolyticus pandemic strains. Emerg Infect Dis. 6:2000;631-636.
4. Daniels N.A., MacKinnon L., Bishop R., et al. Vibrio parahaemolyticus infections in the United States, 1973-1998. J Infect Dis. 181:2000;1661-1666.
5. Centers for Disease Control and Prevention. Outbreak of Vibrio parahaemolyticus infections associated with eating raw oysters - Pacific Northwest, 1997. MMWRMorb Mortal Wkly Rep 1998; 47: 457-62.
6. Centers for Disease Control and Prevention. Outbreak of Vibrio parahaemolyticus infection associated with eating raw oysters and clams harvested from Long Island Sound - Connecticut, New Jersey, and New York, 1998. MMWRMorb Mortal Wkly Rep 1999; 48: 48-51.
7. McCarter L. The multiple identities of Vibrio parahaemolyticus. J Mol Microbiol Biotechnol. 1:1999;51-57.
8. Yamaichi Y., Iida T., Park K.-S., Yamamoto K., Honda T. Physical and genetic map of the genome of Vibrio parahaemolyticus: presence of two chromosomes in Vibrio species. Mol Microbiol. 31:1999;1513-1521.
9. Heidelberg J.F., Eisen J.A., Nelson W.C., et al. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature. 406:2000;477-483.
10. Nasu H., Iida T., Sugahara T., Yamaichi Y., et al. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. J Clin Microbiol. 38:2000;2156-2161.
11. Ewing B., Hillier L., Wendl M.C., Green P. Base-calling of automated sequencer traces using phred: I Accuracy assessment. Genome Res. 8:1998;175-185.
12. Gordon D., Abajian C., Green P. Consed: a graphical tool for sequence finishing. Genome Res. 8:1998;195-202.
13. Sakiyama T., Takami H., Ogasawara N., et al. An automated system for genome analysis to support microbial whole-genome shotgun sequencing. Biosci Biotechnol Biochem. 64:2000;670-673.
14. Salzberg S.L., Delcher A.L., Kasif S., White O. Microbial gene identification using interpolated Markov models. Nucleic Acids Res. 26:1998;544-548.
15. Delcher A.L., Kasif S., Fleischmann R.D., Peterson J., White O., Salzberg S.L. Alignment of whole genomes. Nucleic Acids Res. 27:1999;2369-2376.
16. Yamazaki K., Ohnishi M., Kurokawa K., Yasunaga T. ParalogCluster: classifying paralogs in a genome into paralogous groups. Genome Informatics. 12:2001;409-410.
17. Tatusov R.L., Natale D.A., Garkavtsev I.V., et al. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29:2001;22-28.
18. Kim Y.-K., McCarter L.L. Analysis of the polar flagellar gene system of Vibrio parahaemolyticus. J Bacteriol. 182:2000;3693-3704.
19. Tagomori K., Iida T., Honda T. Comparison of genome structures of vibrios, bacteria possessing two chromosomes. J Bacteriol. 184:2002;4351-4358.
20. Cole S.T., Eiglmeier K., Parkhill J., et al. Massive gene decay in the leprosy bacillus. Nature. 409:2001;1007-1011.
21. Mintz E.D., Popovic T., Blake P.A. Transmission of Vibrio cholerae O1. Wachsmuth I.K., Blake P.A., Olsvik Ø. Vibrio cholerae and cholera: molecular to global perspective. 1994;345-356 ASM Press, Washington DC.
22. Eisen JA, Heidelberg JF, White O, Salzberg SL. Evidence for symmetric chromosomal inversions around the replication origin in bacteria. Genome Biol 2000; 1:RESEARCH0011.
23. Rowe-Magnus D.A., Guerout A.-M., Ploncard P., Dychinco B., Davies J., Mazel D. The evolutionary history of chromosomal super-integrons provides an ancestry for multiresistant integrons. Proc Natl Acad Sci USA. 98:2001;652-657.
24. Groisman E.A., Ochman H. Pathogenicity islands: bacterial evolution in quantum leaps. Cell. 87:1996;791-794.
25. Hueck C.J. Type III protein secretion systems in bacterial pathogens of animals and plants. Microbiol Mol Biol Rev. 62:1998;379-433.
26. Choi S.W., Park C.H., Silva T.M., Zaenker E.I., Guerrant R.L. To culture or not to culture: fecal lactoferrin screening for inflammatory bacterial diarrhea. J Clin Microbiol. 34:1996;928-932.
27. Blake P.A., Weaver R.E., Hollis D.G. Diseases of humans (other than cholera) caused by vibrios. Annu Rev Microbiol. 34:1980;341-367.
28. Kachlany S.C., Planet P.J., Bhattacharjee M.K., et al. Nonspecific adherence by Actinobacillus actinomycetemcomitans requires genes widespread in Bacteria and Archaea. J Bacteriol. 182:2000;6169-6176.
29. Honda T., Iida T. The pathogenicity of Vibrio parahaemolyticus and the role of the thermostable direct haemolysin and related haemolysins. Rev Med Microbiol. 4:1993;106-113.
30. Park K.-S., Iida T., Yamaichi Y., Oyagi T., Yamamoto K., Honda T. Genetic characterization of DNA region containing the trh and ure genes of Vibrio parahaemolyticus. Infect Immun. 68:2000;5742-5748.