-
2
-
-
0001943573
-
Dual sensors and dual response regulators interact to control nitrate- and nitrite-responsive gene expression in Escherichia coli
-
Eds. Hoch J.A., Silhavy T.J. Washington: ASM Press
-
Stewart V., Rabin R.S. 1995 Dual sensors and dual response regulators interact to control nitrate- and nitrite-responsive gene expression in Escherichia coli. In: Two-Component Signal Transduction. Eds. Hoch J.A., Silhavy T.J. Washington: ASM Press, pp. 233-252.
-
(1995)
Two-Component Signal Transduction
, pp. 233-252
-
-
Stewart, V.1
Rabin, R.S.2
-
3
-
-
0027251261
-
Dual response regulators (NarL and NarP) interact with dual sensors (NarX and NarQ) to control nitrate- and nitrite-regulated gene expression in Escherichia coli K-12
-
Rabin R.S., Stewart V. 1993. Dual response regulators (NarL and NarP) interact with dual sensors (NarX and NarQ) to control nitrate- and nitrite-regulated gene expression in Escherichia coli K-12. J. Bacteriol. 175, 3259-3268.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 3259-3268
-
-
Rabin, R.S.1
Stewart, V.2
-
4
-
-
0030868258
-
Differential regulation by the homologous response regulators NarL and NarP of Escherichia coli K-12 depends on DNA binding site arrangement
-
Darwin A.J., Tyson K.L., Busby S.J., Stewart V. 1997. Differential regulation by the homologous response regulators NarL and NarP of Escherichia coli K-12 depends on DNA binding site arrangement. Mol. Microbiol. 25, 583-595.
-
(1997)
Mol. Microbiol.
, vol.25
, pp. 583-595
-
-
Darwin, A.J.1
Tyson, K.L.2
Busby, S.J.3
Stewart, V.4
-
5
-
-
0028023092
-
In vitro interaction of nitrate-responsive regulatory protein NarL with DNA target sequences in the fdnC, narG, narK and frdA operon control regions of Escherichia coli K-12
-
Li J., Kustu S., Stewart V. 1994. In vitro interaction of nitrate-responsive regulatory protein NarL with DNA target sequences in the fdnC, narG, narK and frdA operon control regions of Escherichia coli K-12. J. Mol. Biol. 241, 150-165.
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 150-165
-
-
Li, J.1
Kustu, S.2
Stewart, V.3
-
6
-
-
0031856846
-
Fnr, NarP, and NarL regulation of Escherichia coli K-12 napF (periplasmic nitrate reductase) operon transcription in vitro
-
Darwin A.J., Ziegelhoffer E.C., Kiley P.J., Stewart V. 1998. Fnr, NarP, and NarL regulation of Escherichia coli K-12 napF (periplasmic nitrate reductase) operon transcription in vitro. J. Bacteriol. 180, 4208.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4208
-
-
Darwin, A.J.1
Ziegelhoffer, E.C.2
Kiley, P.J.3
Stewart, V.4
-
7
-
-
0033814304
-
The nrfA and nirB nitrite reductase operons in Escherichia coli are expressed differently in response to nitrate than to nitrite
-
Wang H., Gunsalus R.P. 2000. The nrfA and nirB nitrite reductase operons in Escherichia coli are expressed differently in response to nitrate than to nitrite. J. Bacteriol. 182, 5813-5822.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 5813-5822
-
-
Wang, H.1
Gunsalus, R.P.2
-
8
-
-
0042389665
-
Coordinate regulation of the Escherichia coli formate dehydrogenase fdnGHI and fdhF genes in response to nitrate, nitrite, and formate: Roles for NarL and NarP
-
Wang H., Gunsalus R.P. 2003. Coordinate regulation of the Escherichia coli formate dehydrogenase fdnGHI and fdhF genes in response to nitrate, nitrite, and formate: Roles for NarL and NarP. J. Bacteriol. 185, 5076-5085.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5076-5085
-
-
Wang, H.1
Gunsalus, R.P.2
-
9
-
-
0032873183
-
Transcriptional regulation in response to oxygen and nitrate of the operons encoding the [NiFe] hydrogenases 1 and 2 of Escherichia coli
-
Richard D.J., Sawers G., Sargent F., McWalter L., Boxer D.H. 1999. Transcriptional regulation in response to oxygen and nitrate of the operons encoding the [NiFe] hydrogenases 1 and 2 of Escherichia coli. Microbiology. 145, 2903-2912.
-
(1999)
Microbiology
, vol.145
, pp. 2903-2912
-
-
Richard, D.J.1
Sawers, G.2
Sargent, F.3
McWalter, L.4
Boxer, D.H.5
-
10
-
-
0029062019
-
Transcriptional regulation of the proton translocating NADH dehydrogenase genes (nuoA-N) of Escherichia coli by electron acceptors, electron donors and gene regulator
-
Bongaerts J., Zoske S., Weidner U., Unden G. 1995. Transcriptional regulation of the proton translocating NADH dehydrogenase genes (nuoA-N) of Escherichia coli by electron acceptors, electron donors and gene regulator. Mol. Microbiol. 16, 521-534.
-
(1995)
Mol. Microbiol.
, vol.16
, pp. 521-534
-
-
Bongaerts, J.1
Zoske, S.2
Weidner, U.3
Unden, G.4
-
11
-
-
19044394317
-
Oxygen and nitrate-dependent regulation of dmsABC operon expression in Escherichia coli: Sites for Fnr and NarL protein interactions
-
Bearson S.M., Albrecht J.A., Gunsalus R.P. 2002. Oxygen and nitrate-dependent regulation of dmsABC operon expression in Escherichia coli: Sites for Fnr and NarL protein interactions. BMC Microbiol. 2, 13.
-
(2002)
BMC Microbiol.
, vol.2
, pp. 13
-
-
Bearson, S.M.1
Albrecht, J.A.2
Gunsalus, R.P.3
-
12
-
-
3042898935
-
The narL gene product activates the nitrate reductase operon and represses the fumarate reductase and trimethylamine N-oxide reductase operons in Escherichia coli
-
Iuchi S., Lin E.C. 1987. The narL gene product activates the nitrate reductase operon and represses the fumarate reductase and trimethylamine N-oxide reductase operons in Escherichia coli. Proc. Natl. Acad. Sci. USA. 84, 3901-3905.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 3901-3905
-
-
Iuchi, S.1
Lin, E.C.2
-
13
-
-
0032436622
-
Transcriptional regulation and organization of the dcuA and dcuB genes, encoding homologous anaerobic C4-dicarboxylate transporters in Escherichia coli
-
Golby P., Kelly D.J., Guest J.R., Andrews S.C. 1998. Transcriptional regulation and organization of the dcuA and dcuB genes, encoding homologous anaerobic C4-dicarboxylate transporters in Escherichia coli. J. Bacteriol. 180, 6586-6596.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 6586-6596
-
-
Golby, P.1
Kelly, D.J.2
Guest, J.R.3
Andrews, S.C.4
-
14
-
-
0029006481
-
Nitrate repression of the Escherichia coli pfl operon is mediated by the dual sensors NarQ and NarX and the dual regulators NarL and NarP
-
Kaiser M., Sawers G. 1995. Nitrate repression of the Escherichia coli pfl operon is mediated by the dual sensors NarQ and NarX and the dual regulators NarL and NarP. J. Bacteriol. 177, 3647-3655.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 3647-3655
-
-
Kaiser, M.1
Sawers, G.2
-
15
-
-
0026333920
-
Regulation of the adhE gene, which encodes ethanol dehydrogenase in Escherichia coli
-
Chen Y.M., Lin E.C. 1991. Regulation of the adhE gene, which encodes ethanol dehydrogenase in Escherichia coli. J. Bacteriol. 173, 8009-8013.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 8009-8013
-
-
Chen, Y.M.1
Lin, E.C.2
-
16
-
-
0033565546
-
Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes
-
Mironov A.A., Koonin E.V., Roytberg M.A., Gelfand M.S. 1999. Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes. Nucleic Acids Res. 27, 2981-2989.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2981-2989
-
-
Mironov, A.A.1
Koonin, E.V.2
Roytberg, M.A.3
Gelfand, M.S.4
-
18
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z M.W., Lipman D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.M.W.5
Lipman, D.J.6
-
19
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. 1997. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
20
-
-
0029901637
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
-
Felsenstein J. 1996. Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol. 266, 418-427.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 418-427
-
-
Felsenstein, J.1
-
21
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider T.D., Stephens R.M. 1990. Sequence logos: A new way to display consensus sequences. Nucleic Acids Res. 18, 6097-6100.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
22
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner F.R., Plunkett G., Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. 1997. The complete genome sequence of Escherichia coli K-12. Science. 277, 1453-1474.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
23
-
-
0037377818
-
Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18
-
Deng W., Liou S.R., Plunkett G., Mayhew G.F., Rose D.J., Burland V., Kodoyianni V., Schwartz D.C., Blattner F.R. 2003. Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. J. Bacteriol. 185, 2330-2337.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 2330-2337
-
-
Deng, W.1
Liou, S.R.2
Plunkett, G.3
Mayhew, G.F.4
Rose, D.J.5
Burland, V.6
Kodoyianni, V.7
Schwartz, D.C.8
Blattner, F.R.9
-
24
-
-
3342994863
-
Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors
-
Bell K.S., Sebaihia M., Pritchard L., Holden M.T., Hyman L.J., Holeva M.C., Thomson N.R., Bentley S.D., Churcher L.J., Mungall K., Atkin R., Bason N., Brooks K., Chillingworth T., Clark K., Doggett J., Fraser A., Hance Z., Hauser H., Jagels K., Moule S., Norbertczak H., Ormond D., Price C., Quail M.A., Sanders M., Walker D., Whitehead S., Salmond G.P., Birch P.R., Parkhill J., Toth I.K. 2004. Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors. Proc. Natl. Acad. Sci. USA. 101, 11105-11110.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11105-11110
-
-
Bell, K.S.1
Sebaihia, M.2
Pritchard, L.3
Holden, M.T.4
Hyman, L.J.5
Holeva, M.C.6
Thomson, N.R.7
Bentley, S.D.8
Churcher, L.J.9
Mungall, K.10
Atkin, R.11
Bason, N.12
Brooks, K.13
Chillingworth, T.14
Clark, K.15
Doggett, J.16
Fraser, A.17
Hance, Z.18
Hauser, H.19
Jagels, K.20
Moule, S.21
Norbertczak, H.22
Ormond, D.23
Price, C.24
Quail, M.A.25
Sanders, M.26
Walker, D.27
Whitehead, S.28
Salmond, G.P.29
Birch, P.R.30
Parkhill, J.31
Toth, I.K.32
more..
-
25
-
-
0036330894
-
Genome sequence of Yersinia pestis KIM
-
Deng W., Burland V., Plunkett G., Boutin A., Mayhew G.F., Liss P., Perna N.T., Rose D.J., Mau B., Zhou S., Schwartz D.C., Fetherston J.D., Lindler L.E., Brubaker R.R., Plano G.V., Straley S.C., McDonough K.A., Nilles M.L., Matson J.S., Blattner F.R., Perry R.D. 2002. Genome sequence of Yersinia pestis KIM. J. Bacteriol. 184, 4601-4611.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 4601-4611
-
-
Deng, W.1
Burland, V.2
Plunkett, G.3
Boutin, A.4
Mayhew, G.F.5
Liss, P.6
Perna, N.T.7
Rose, D.J.8
Mau, B.9
Zhou, S.10
Schwartz, D.C.11
Fetherston, J.D.12
Lindler, L.E.13
Brubaker, R.R.14
Plano, G.V.15
Straley, S.C.16
McDonough, K.A.17
Nilles, M.L.18
Matson, J.S.19
Blattner, F.R.20
Perry, R.D.21
more..
-
26
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann R.D., Adams M.D., White O., Clayton R.A., Kirkness E.F., Kerlavage A.R., Bult C.J., Tomb J.F., Dougherty B.A., Merrick J.M., McKenney K., Sutton G.G., FitzHugh W., Fields C.A., Gocayne J.D., Scott J.D., Shirley R., Liu L.I., Glodek A., Kelley J.M., Weidman J.F., Phillips C.A., Spriggs T., Hedblom E., Cotton M.D., Utterback T., Hanna M.C., Nguyen D.T., Saudek D.M., Brandon R.C., Fine L.D., Fritchman J.L., Fuhrmann J.L., Geoghagen N.S., Gnehm C.L., McDonald L.A., Small K.V., Fraser C.M., Smith H.O., Venter J.C. 1995. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science. 269, 496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
Bult, C.J.7
Tomb, J.F.8
Dougherty, B.A.9
Merrick, J.M.10
McKenney, K.11
Sutton, G.G.12
FitzHugh, W.13
Fields, C.A.14
Gocayne, J.D.15
Scott, J.D.16
Shirley, R.17
Liu, L.I.18
Glodek, A.19
Kelley, J.M.20
Weidman, J.F.21
Phillips, C.A.22
Spriggs, T.23
Hedblom, E.24
Cotton, M.D.25
Utterback, T.26
Hanna, M.C.27
Nguyen, D.T.28
Saudek, D.M.29
Brandon, R.C.30
Fine, L.D.31
Fritchman, J.L.32
Fuhrmann, J.L.33
Geoghagen, N.S.34
Gnehm, C.L.35
McDonald, L.A.36
Small, K.V.37
Fraser, C.M.38
Smith, H.O.39
Venter, J.C.40
more..
-
27
-
-
0035853112
-
Complete genomic sequence of Pasteurella multocida, Pm70
-
May B.J., Zhang Q., Li L.L., Paustian M.L., Whittam T.S., Kapur V. 2001. Complete genomic sequence of Pasteurella multocida, Pm70. Proc. Natl. Acad. Sci. USA. 98, 3460-3465.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 3460-3465
-
-
May, B.J.1
Zhang, Q.2
Li, L.L.3
Paustian, M.L.4
Whittam, T.S.5
Kapur, V.6
-
28
-
-
17144462135
-
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
-
Heidelberg J.F., Eisen J.A., Nelson W.C., Clayton R.A., Gwinn M.L., Dodson R.J., Haft D.H., Hickey E.K., Peterson J.D., Umayam L.A., Gill S.R., Nelson K.E., Read T.D., Tettelin H., Richardson D., Ermolaeva M.D., Vamathevan J., Bass S., Qin H., Dragoi I., Sellers P., McDonald L., Utterback T., Fleishmann R.D., Nierman W.C., White O., Salzberg S.L., Smith H.O., Colwell R.R., Mekalanos J.J., Venter J.C., Fraser C.M. 2000. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature. 406, 477-483.
-
(2000)
Nature
, vol.406
, pp. 477-483
-
-
Heidelberg, J.F.1
Eisen, J.A.2
Nelson, W.C.3
Clayton, R.A.4
Gwinn, M.L.5
Dodson, R.J.6
Haft, D.H.7
Hickey, E.K.8
Peterson, J.D.9
Umayam, L.A.10
Gill, S.R.11
Nelson, K.E.12
Read, T.D.13
Tettelin, H.14
Richardson, D.15
Ermolaeva, M.D.16
Vamathevan, J.17
Bass, S.18
Qin, H.19
Dragoi, I.20
Sellers, P.21
McDonald, L.22
Utterback, T.23
Fleishmann, R.D.24
Nierman, W.C.25
White, O.26
Salzberg, S.L.27
Smith, H.O.28
Colwell, R.R.29
Mekalanos, J.J.30
Venter, J.C.31
Fraser, C.M.32
more..
-
29
-
-
0037333881
-
Genome sequence of Vibrio parahaemolyticus: A pathogenic mechanism distinct from that of V. cholerae
-
Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T. 2003. Genome sequence of Vibrio parahaemolyticus: A pathogenic mechanism distinct from that of V. cholerae. Lancet. 361, 743-749.
-
(2003)
Lancet
, vol.361
, pp. 743-749
-
-
Makino, K.1
Oshima, K.2
Kurokawa, K.3
Yokoyama, K.4
Uda, T.5
Tagomori, K.6
Iijima, Y.7
Najima, M.8
Nakano, M.9
Yamashita, A.10
Kubota, Y.11
Kimura, S.12
Yasunaga, T.13
Honda, T.14
Shinagawa, H.15
Hattori, M.16
Iida, T.17
-
30
-
-
0141781023
-
Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients
-
Kim Y.R., Lee S.E., Kim C.M., Kim S.Y., Shin E.K., Shin D.H., Chung S.S., Choy H.E., Progulske-Fox A., Hillman J.D., Handfield M., Rhee J.H. 2003. Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients. Infect. Immunol. 71, 5461-5471.
-
(2003)
Infect. Immunol.
, vol.71
, pp. 5461-5471
-
-
Kim, Y.R.1
Lee, S.E.2
Kim, C.M.3
Kim, S.Y.4
Shin, E.K.5
Shin, D.H.6
Chung, S.S.7
Choy, H.E.8
Progulske-Fox, A.9
Hillman, J.D.10
Handfield, M.11
Rhee, J.H.12
-
31
-
-
0032900994
-
Gen-Bank
-
Benson D.A., Boguski M.S., Lipman D.J., Ostell J., Ouellette B.F., Rapp B.A., Wheeler D.L. 1999. Gen-Bank. Nucleic Acids Res. 27, 12-17.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 12-17
-
-
Benson, D.A.1
Boguski, M.S.2
Lipman, D.J.3
Ostell, J.4
Ouellette, B.F.5
Rapp, B.A.6
Wheeler, D.L.7
-
32
-
-
0035161543
-
Genomes OnLine Database (GOLD): A monitor of genome projects worldwide
-
Bernal A., Ear U., Kyrpides N. 2001. Genomes OnLine Database (GOLD): A monitor of genome projects worldwide. Nucleic Acids Res. 29, 126-127.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 126-127
-
-
Bernal, A.1
Ear, U.2
Kyrpides, N.3
-
33
-
-
0345689429
-
Response to culture aeration mediated by the nitrate and nitrite sensor NarQ of Escherichia coli K-12
-
Stewart V., Chen L.L., Wu H.C. 2003. Response to culture aeration mediated by the nitrate and nitrite sensor NarQ of Escherichia coli K-12. Mol. Microbiol. 50, 1391-1399.
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 1391-1399
-
-
Stewart, V.1
Chen, L.L.2
Wu, H.C.3
-
34
-
-
0037326468
-
Biochemical Society Special Lecture: Nitrate- and nitrite-responsive sensors NarX and NarQ of proteobacteria
-
Stewart V. 2003. Biochemical Society Special Lecture: Nitrate- and nitrite-responsive sensors NarX and NarQ of proteobacteria. Biochem. Soc. Trans. 31, 1-10.
-
(2003)
Biochem. Soc. Trans.
, vol.31
, pp. 1-10
-
-
Stewart, V.1
-
35
-
-
0029736725
-
Structure of the Escherichia coli response regulator NarL
-
Baikalov I., Schroder I., Kaczor-Grzeskowiak M., Grzeskowiak K., Gunsalus R.P., Dickerson R.E. 1996. Structure of the Escherichia coli response regulator NarL. Biochemistry. 35, 11053-11061.
-
(1996)
Biochemistry
, vol.35
, pp. 11053-11061
-
-
Baikalov, I.1
Schroder, I.2
Kaczor-Grzeskowiak, M.3
Grzeskowiak, K.4
Gunsalus, R.P.5
Dickerson, R.E.6
-
36
-
-
0036786677
-
Dimerization allows DNA target site recognition by the NarL response regulator
-
Maris A.E., Sawaya M.R., Kaczor-Grzeskowiak M., Jarvis M.R., Bearson S.M., Kopka M.L., Schroder I., Gunsalus R.P., Dickerson R.E. 2002. Dimerization allows DNA target site recognition by the NarL response regulator. Nature Struct. Biol. 9, 771-778.
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 771-778
-
-
Maris, A.E.1
Sawaya, M.R.2
Kaczor-Grzeskowiak, M.3
Jarvis, M.R.4
Bearson, S.M.5
Kopka, M.L.6
Schroder, I.7
Gunsalus, R.P.8
Dickerson, R.E.9
-
37
-
-
9144221853
-
Prolegomena to the evolution of transcriptional regulation in bacterial genomes
-
Eds. Galperin M.Y., Koonin E.V. Wymondham, U.K.: Caiser Acad. Press
-
Gelfand M.S., Laikova O.N. 2003. Prolegomena to the evolution of transcriptional regulation in bacterial genomes. In: Frontiers in Computitional Genomics. Eds. Galperin M.Y., Koonin E.V. Wymondham, U.K.: Caiser Acad. Press, pp. 195-216.
-
(2003)
Frontiers in Computitional Genomics
, pp. 195-216
-
-
Gelfand, M.S.1
Laikova, O.N.2
-
38
-
-
0029990165
-
Analysis of nitrate regulatory protein NarL-binding sites in the fdnG and narG operon control regions of Escherichia coli K-12
-
Darwin A.J., Li J., Stewart V. 1996. Analysis of nitrate regulatory protein NarL-binding sites in the fdnG and narG operon control regions of Escherichia coli K-12. Mol. Microbiol. 20, 621-632.
-
(1996)
Mol. Microbiol.
, vol.20
, pp. 621-632
-
-
Darwin, A.J.1
Li, J.2
Stewart, V.3
-
39
-
-
0027219606
-
Analysis of the Escherichia coli genome: 3. DNA sequence of the region from 87.2 to 89.2 minutes
-
Plunkett G., Burland. V., Daniels D.L., Blattner F.R. 1993. Analysis of the Escherichia coli genome: 3. DNA sequence of the region from 87.2 to 89.2 minutes. Nucleic Acids Res. 21, 3391-3398.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3391-3398
-
-
Plunkett, G.1
Burland, V.2
Daniels, D.L.3
Blattner, F.R.4
-
40
-
-
0019874671
-
Potassium ion is required for the generation of pH-dependent membrane potential and delta pH by the marine bacterium Vibrio alginolyticus
-
Tokuda H., Nakamura T., Unemoto T. 1981. Potassium ion is required for the generation of pH-dependent membrane potential and delta pH by the marine bacterium Vibrio alginolyticus. Biochemistry. 20, 4198-4203.
-
(1981)
Biochemistry
, vol.20
, pp. 4198-4203
-
-
Tokuda, H.1
Nakamura, T.2
Unemoto, T.3
-
41
-
-
0033814270
-
The torYZ (yecK-bisZ) operon encodes a third respiratory trimethylamine N-oxide reductase in Escherichia coli
-
Gon S., Patte J.C., Mejean V., Iobbi-Nivol C. 2000. The torYZ (yecK-bisZ) operon encodes a third respiratory trimethylamine N-oxide reductase in Escherichia coli. J. Bacteriol. 182, 5779-5786.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 5779-5786
-
-
Gon, S.1
Patte, J.C.2
Mejean, V.3
Iobbi-Nivol, C.4
-
42
-
-
0025129999
-
Cytochrome o (cyoABCDE) and d (cydAB) oxidase gene expression in Escherichia coli is regulated by oxygen, pH, and the fnr gene product
-
Cotter P.A., Chepuri V., Gennis R.B., Gunsalus R.P. 1990. Cytochrome o (cyoABCDE) and d (cydAB) oxidase gene expression in Escherichia coli is regulated by oxygen, pH, and the fnr gene product. J. Bacteriol. 172, 6333-6338.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 6333-6338
-
-
Cotter, P.A.1
Chepuri, V.2
Gennis, R.B.3
Gunsalus, R.P.4
-
43
-
-
0035152663
-
Oxygen- and growth rate-dependent regulation of Escherichia coli fumarase (FumA, FumB, and FumC) activity
-
Tseng C.P., Yu C.C., Lin H.H., Chang C.Y., Kuo J.T. 2001. Oxygen- and growth rate-dependent regulation of Escherichia coli fumarase (FumA, FumB, and FumC) activity. J. Bacteriol. 183, 461-467.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 461-467
-
-
Tseng, C.P.1
Yu, C.C.2
Lin, H.H.3
Chang, C.Y.4
Kuo, J.T.5
-
44
-
-
0025820091
-
Adaptive responses to oxygen limitation in Escherichia coli
-
Spiro S., Guest J.R. 1991. Adaptive responses to oxygen limitation in Escherichia coli. Trends Biochem. Sci. 16, 310-314.
-
(1991)
Trends Biochem. Sci.
, vol.16
, pp. 310-314
-
-
Spiro, S.1
Guest, J.R.2
-
45
-
-
0036231445
-
Expression of the Escherichia coli yfiD gene responds to intracellular pH and reduces the accumulation of acidic metabolic end products
-
Wyborn N.R., Messenger S.L., Henderson R.A., Sawers G., Roberts R.E., Attwood M.M., Green J. 2002. Expression of the Escherichia coli yfiD gene responds to intracellular pH and reduces the accumulation of acidic metabolic end products. Microbiology. 148, 1015-1026.
-
(2002)
Microbiology
, vol.148
, pp. 1015-1026
-
-
Wyborn, N.R.1
Messenger, S.L.2
Henderson, R.A.3
Sawers, G.4
Roberts, R.E.5
Attwood, M.M.6
Green, J.7
-
46
-
-
0034741113
-
Regulation of the ldhA gene, encoding the fermentative lactate dehydrogenase of Escherichia coli
-
Jiang G.R., Nikolova S., Clark D.P. 2001. Regulation of the ldhA gene, encoding the fermentative lactate dehydrogenase of Escherichia coli. Microbiology. 147, 2437-2446.
-
(2001)
Microbiology
, vol.147
, pp. 2437-2446
-
-
Jiang, G.R.1
Nikolova, S.2
Clark, D.P.3
-
47
-
-
0024324714
-
Identification, molecular cloning and sequence analysis of a gene cluster encoding the class II fructose 1.6-bisphosphate aldolase, 3-phosphoglycerate kinase and a putative second glyceraldehyde 3-phosphate dehydrogenase of Escherichia coli
-
Alefounder P.R., Perham R.N. 1989. Identification, molecular cloning and sequence analysis of a gene cluster encoding the class II fructose 1.6-bisphosphate aldolase, 3-phosphoglycerate kinase and a putative second glyceraldehyde 3-phosphate dehydrogenase of Escherichia coli. Mol. Microbiol. 3, 723-732.
-
(1989)
Mol. Microbiol.
, vol.3
, pp. 723-732
-
-
Alefounder, P.R.1
Perham, R.N.2
-
48
-
-
0028815572
-
Regulation of malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability
-
Park S.J., Cotter P.A., Gunsalus R.P. 1995. Regulation of malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability. J. Bacteriol. 177, 6652-6656.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6652-6656
-
-
Park, S.J.1
Cotter, P.A.2
Gunsalus, R.P.3
-
49
-
-
0030791232
-
Aerobic regulation of the sucABCD genes of Escherichia coli, which encode alpha-ketoglutarate dehydrogenase and succinyl coenzyme a synthetase: Roles of ArcA, Fnr, and the upstream sdh-CDAB promoter
-
Park S.J., Chao G., Gunsalus R. 1997. Aerobic regulation of the sucABCD genes of Escherichia coli, which encode alpha-ketoglutarate dehydrogenase and succinyl coenzyme A synthetase: Roles of ArcA, Fnr, and the upstream sdh-CDAB promoter. J. Bacteriol. 178, 4138-4142.
-
(1997)
J. Bacteriol.
, vol.178
, pp. 4138-4142
-
-
Park, S.J.1
Chao, G.2
Gunsalus, R.3
-
51
-
-
0000481934
-
Folate biosynthesis, reduction, and polyglutamylation
-
Ed. Neidhart F.C. Washington: ASM Press
-
Green J.M., Nichols B.P., Matthews R.G. 1996. Folate biosynthesis, reduction, and polyglutamylation. In: Escherichia coli and Salmonella. Cellular and Molecular Biology. Ed. Neidhart F.C. Washington: ASM Press, pp. 665-673.
-
(1996)
Escherichia coli and Salmonella. Cellular and Molecular Biology
, pp. 665-673
-
-
Green, J.M.1
Nichols, B.P.2
Matthews, R.G.3
-
53
-
-
0029030757
-
Expression of the narX, narL, narP, and narQ genes of Escherichia coli K-12: Regulation of the regulators
-
Darwin A.J., Stewart V. 1995. Expression of the narX, narL, narP, and narQ genes of Escherichia coli K-12: Regulation of the regulators. J. Bacteriol. 177, 3865-3869.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 3865-3869
-
-
Darwin, A.J.1
Stewart, V.2
-
56
-
-
0036716306
-
The purine regulon of gamma-proteobacteria: A detailed description
-
Ravcheev D.A., Gelfand M.S., Mironov A.A., Rakhmaninova A.B. 2002. The purine regulon of gamma-proteobacteria: A detailed description. Genetika. 38, 1203-1214.
-
(2002)
Genetika
, vol.38
, pp. 1203-1214
-
-
Ravcheev, D.A.1
Gelfand, M.S.2
Mironov, A.A.3
Rakhmaninova, A.B.4
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