메뉴 건너뛰기




Volumn 13, Issue 3, 2007, Pages 385-395

Comparison of siRNA-induced off-target RNA and protein effects

Author keywords

AGO2; G:U wobble; Off target effects; siRNA; SiRNA canonical cleavage

Indexed keywords

MESSENGER RNA; SMALL INTERFERING RNA;

EID: 33847245910     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.352507     Document Type: Article
Times cited : (126)

References (43)
  • 2
    • 33746055678 scopus 로고    scopus 로고
    • mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes
    • Behm-Ansmant, I., Rehwinkel, J., Doerks, T., Stark, A., Bork, P., and Izaurralde, E. 2006. mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes. Genes & Dev. 20: 1885-1898.
    • (2006) Genes & Dev , vol.20 , pp. 1885-1898
    • Behm-Ansmant, I.1    Rehwinkel, J.2    Doerks, T.3    Stark, A.4    Bork, P.5    Izaurralde, E.6
  • 4
    • 0037418839 scopus 로고    scopus 로고
    • bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
    • Brennecke, J., Hipfner, D.R., Stark, A., Russell, R.B., and Cohen, S.M. 2003. bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 113: 25-36.
    • (2003) Cell , vol.113 , pp. 25-36
    • Brennecke, J.1    Hipfner, D.R.2    Stark, A.3    Russell, R.B.4    Cohen, S.M.5
  • 9
    • 1642374097 scopus 로고    scopus 로고
    • Specificity of microRNA target selection in translational repression
    • Doench, J.G. and Sharp, P.A. 2004. Specificity of microRNA target selection in translational repression. Genes & Dev. 18: 504-511.
    • (2004) Genes & Dev , vol.18 , pp. 504-511
    • Doench, J.G.1    Sharp, P.A.2
  • 12
    • 8344240473 scopus 로고    scopus 로고
    • A link between mRNA turnover and RNA interference in Arabidopsis
    • Gazzani, S., Lawrenson, T., Woodward, C., Headon, D., and Sablowski, R. 2004. A link between mRNA turnover and RNA interference in Arabidopsis. Science 306: 1046-1048.
    • (2004) Science , vol.306 , pp. 1046-1048
    • Gazzani, S.1    Lawrenson, T.2    Woodward, C.3    Headon, D.4    Sablowski, R.5
  • 14
    • 3042602447 scopus 로고    scopus 로고
    • Kinetic analysis of the RNAi enzyme complex
    • Haley, B. and Zamore, P.D. 2004. Kinetic analysis of the RNAi enzyme complex. Nat. Struct. Mol. Biol. 11: 599-606.
    • (2004) Nat. Struct. Mol. Biol , vol.11 , pp. 599-606
    • Haley, B.1    Zamore, P.D.2
  • 15
    • 24044548350 scopus 로고    scopus 로고
    • Tolerated wobble mutations in siRNAs decrease specificity, but can enhance activity in vivo
    • Holen, T., Moe, S.E., Sorbo, J.G., Meza, T.J., Ottersen, O.P., and Klungland, A. 2005. Tolerated wobble mutations in siRNAs decrease specificity, but can enhance activity in vivo. Nucleic Acids Res. 33: 4704-4710.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4704-4710
    • Holen, T.1    Moe, S.E.2    Sorbo, J.G.3    Meza, T.J.4    Ottersen, O.P.5    Klungland, A.6
  • 17
    • 33745612464 scopus 로고    scopus 로고
    • Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity
    • Jackson, A.L., Burchard, J., Schelter, J., Chau, B.N., Cleary, M., Lim, L., and Linsley, P.S. 2006. Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity. RNA 12: 1179-1187.
    • (2006) RNA , vol.12 , pp. 1179-1187
    • Jackson, A.L.1    Burchard, J.2    Schelter, J.3    Chau, B.N.4    Cleary, M.5    Lim, L.6    Linsley, P.S.7
  • 20
    • 0037320231 scopus 로고    scopus 로고
    • P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction
    • Kasschau, K.D., Xie, Z., Allen, E., Llave, C., Chapman, E.J., Krizan, K.A., and Carrington, J.C. 2003. P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction. Dev. Cell 4: 205-217.
    • (2003) Dev. Cell , vol.4 , pp. 205-217
    • Kasschau, K.D.1    Xie, Z.2    Allen, E.3    Llave, C.4    Chapman, E.J.5    Krizan, K.A.6    Carrington, J.C.7
  • 21
    • 13444312098 scopus 로고    scopus 로고
    • Substrate requirements for let-7 function in the developing zebrafish embryo
    • Kloosterman, W.P., Wienholds, E., Ketting, R.F., and Plasterk, R.H. 2004. Substrate requirements for let-7 function in the developing zebrafish embryo. Nucleic Acids Res. 32: 6284-6291.
    • (2004) Nucleic Acids Res , vol.32 , pp. 6284-6291
    • Kloosterman, W.P.1    Wienholds, E.2    Ketting, R.F.3    Plasterk, R.H.4
  • 22
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis, B.P., Burge, C.B., and Bartel, D.P. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 27
    • 2442495329 scopus 로고    scopus 로고
    • RISC is a 5′ phosphomonester- producing RNA endonuclease
    • Martinez, J. and Tuschl, T. 2004. RISC is a 5′ phosphomonester- producing RNA endonuclease. Genes Dev. 18: 975-980.
    • (2004) Genes Dev , vol.18 , pp. 975-980
    • Martinez, J.1    Tuschl, T.2
  • 28
    • 0037031576 scopus 로고    scopus 로고
    • Single-stranded antisense siRNAs guide target RNA cleavage in RNAi
    • Martinez, J., Patkaniowska, A., Urlaub, H., Luhrmann, R., and Tuschl, T. 2002. Single-stranded antisense siRNAs guide target RNA cleavage in RNAi. Cell 110: 563-574.
    • (2002) Cell , vol.110 , pp. 563-574
    • Martinez, J.1    Patkaniowska, A.2    Urlaub, H.3    Luhrmann, R.4    Tuschl, T.5
  • 29
    • 15444368560 scopus 로고    scopus 로고
    • Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome
    • Orban, T.I. and Izaurralde, E. 2005. Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome. RNA 11: 459-469.
    • (2005) RNA , vol.11 , pp. 459-469
    • Orban, T.I.1    Izaurralde, E.2
  • 30
    • 0347623204 scopus 로고    scopus 로고
    • Nonspecific, concentration-dependent stimulation and repression of mammalian gene expression by small interfering RNAs (siRNAs)
    • Persengiev, S.P., Zhu, X., and Green, M.R. 2004. Nonspecific, concentration-dependent stimulation and repression of mammalian gene expression by small interfering RNAs (siRNAs). RNA 10: 12-18.
    • (2004) RNA , vol.10 , pp. 12-18
    • Persengiev, S.P.1    Zhu, X.2    Green, M.R.3
  • 31
    • 32444436121 scopus 로고    scopus 로고
    • Short RNAs repress translation after initiation in mammalian cells
    • Petersen, C.P., Bordeleau, M.E., Pelletier, J., and Sharp, P.A. 2006. Short RNAs repress translation after initiation in mammalian cells. Mol. Cell 21: 533-542.
    • (2006) Mol. Cell , vol.21 , pp. 533-542
    • Petersen, C.P.1    Bordeleau, M.E.2    Pelletier, J.3    Sharp, P.A.4
  • 32
    • 33645808039 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNAs regulated by Drosha and Argonaute proteins in Drosophila melanogaster
    • Rehwinkel, J., Natalin, P., Stark, A., Brennecke, J., Cohen, S.M., and Izaurralde, E. 2006. Genome-wide analysis of mRNAs regulated by Drosha and Argonaute proteins in Drosophila melanogaster. Mol. Cell. Biol. 26: 2965-2975.
    • (2006) Mol. Cell. Biol , vol.26 , pp. 2965-2975
    • Rehwinkel, J.1    Natalin, P.2    Stark, A.3    Brennecke, J.4    Cohen, S.M.5    Izaurralde, E.6
  • 33
    • 0142173075 scopus 로고    scopus 로고
    • Small RNAs with imperfect match to endogenous mRNA repress translation. Implications for off-target activity of small inhibitory RNA in mammalian cells
    • Saxena, S., Jonsson, Z.O., and Dutta, A. 2003. Small RNAs with imperfect match to endogenous mRNA repress translation. Implications for off-target activity of small inhibitory RNA in mammalian cells. J. Biol. Chem. 278: 44312-44319.
    • (2003) J. Biol. Chem , vol.278 , pp. 44312-44319
    • Saxena, S.1    Jonsson, Z.O.2    Dutta, A.3
  • 38
    • 20444427566 scopus 로고    scopus 로고
    • Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies
    • Sen, G.L. and Blau, H.M. 2005. Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies. Nat. Cell Biol. 7: 633-636.
    • (2005) Nat. Cell Biol , vol.7 , pp. 633-636
    • Sen, G.L.1    Blau, H.M.2
  • 39
    • 4444302947 scopus 로고    scopus 로고
    • Crystal structure of Argonaute and its implications for RISC slicer activity
    • Song, J.J., Smith, S.K., Hannon, G.J., and Joshua-Tor, L. 2004. Crystal structure of Argonaute and its implications for RISC slicer activity. Science 305: 1434-1437.
    • (2004) Science , vol.305 , pp. 1434-1437
    • Song, J.J.1    Smith, S.K.2    Hannon, G.J.3    Joshua-Tor, L.4
  • 40
    • 3242691607 scopus 로고    scopus 로고
    • AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets
    • Souret, F.F., Kastenmayer, J.P., and Green, P.J. 2004. AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets. Mol. Cell 15: 173-183.
    • (2004) Mol. Cell , vol.15 , pp. 173-183
    • Souret, F.F.1    Kastenmayer, J.P.2    Green, P.J.3
  • 41
  • 42
    • 27144475302 scopus 로고    scopus 로고
    • Micro-RNA regulation of the mammalian lin-28 gene during neuronal differentiation of embryonal carcinoma cells
    • Wu, L. and Belasco, J.G. 2005. Micro-RNA regulation of the mammalian lin-28 gene during neuronal differentiation of embryonal carcinoma cells. Mol. Cell. Biol. 25: 9198-9208.
    • (2005) Mol. Cell. Biol , vol.25 , pp. 9198-9208
    • Wu, L.1    Belasco, J.G.2
  • 43
    • 33645119514 scopus 로고    scopus 로고
    • MicroRNAs direct rapid deadenylation of mRNA
    • Wu, L., Fan, J., and Belasco, J.G. 2006. MicroRNAs direct rapid deadenylation of mRNA. Proc. Natl. Acad. Sci. 103: 4034-4039.
    • (2006) Proc. Natl. Acad. Sci , vol.103 , pp. 4034-4039
    • Wu, L.1    Fan, J.2    Belasco, J.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.