메뉴 건너뛰기




Volumn 26, Issue 8, 2006, Pages 2965-2975

Genome-wide analysis of mRNAs regulated by drosha and argonaute proteins in Drosophila melanogaster

Author keywords

[No Author keywords available]

Indexed keywords

DROSOPHILA PROTEIN; MESSENGER RNA; MICRORNA; PROTEIN ARGONAUTE; PROTEIN ARGONAUTE 1; PROTEIN ARGONAUTE 2; PROTEIN DROSHA; PROTEIN PIWI; SMALL INTERFERING RNA; TRANSCRIPTOME; UNCLASSIFIED DRUG;

EID: 33645808039     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.26.8.2965-2975.2006     Document Type: Article
Times cited : (114)

References (53)
  • 1
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • Ambros, V. 2004. The functions of animal microRNAs. Nature 431:350-355.
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 3
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology
    • Ashburner, M., C. A. Ball, et al. 2000. Gene ontology: tool for the unification of biology. Nat. Genet. 25:25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2
  • 5
    • 0037418839 scopus 로고    scopus 로고
    • Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
    • Brennecke, J., D. R. Hipfner, A. Stark, R. B. Russell, and S. M. Cohen. 2003. Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 113:25-36.
    • (2003) Cell , vol.113 , pp. 25-36
    • Brennecke, J.1    Hipfner, D.R.2    Stark, A.3    Russell, R.B.4    Cohen, S.M.5
  • 7
    • 0036828639 scopus 로고    scopus 로고
    • The Argonaute family: Tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis
    • Carmell, M. A., Z. Xuan, M. Q. Zhang, and G. J. Hannon. 2002. The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis. Genes Dev. 16:2733-2742.
    • (2002) Genes Dev. , vol.16 , pp. 2733-2742
    • Carmell, M.A.1    Xuan, Z.2    Zhang, M.Q.3    Hannon, G.J.4
  • 8
    • 0034306266 scopus 로고    scopus 로고
    • Domains in gene silencing and cell differentiation proteins: The novel PAZ domain and redefinition of the Piwi domain
    • Cerutti, L., N. Mian, and A. Bateman. 2000. Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain. Trends Biochem. Sci. 25:481-482.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 481-482
    • Cerutti, L.1    Mian, N.2    Bateman, A.3
  • 9
    • 0032443562 scopus 로고    scopus 로고
    • A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal
    • Cox, D. N., A. Chao, J. Baker, L. Chang, D. Qiao, and H. Lin. 1998. A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal. Genes Dev. 12:3715-3727.
    • (1998) Genes Dev. , vol.12 , pp. 3715-3727
    • Cox, D.N.1    Chao, A.2    Baker, J.3    Chang, L.4    Qiao, D.5    Lin, H.6
  • 10
    • 9144224451 scopus 로고    scopus 로고
    • Processing of primary microRNAs by the Microprocessor complex
    • Denli, A. M., B. B. Tops, R. H. Plasterk, R. F. Ketting, and G. J. Hannon. 2004. Processing of primary microRNAs by the Microprocessor complex. Nature 432:231-235.
    • (2004) Nature , vol.432 , pp. 231-235
    • Denli, A.M.1    Tops, B.B.2    Plasterk, R.H.3    Ketting, R.F.4    Hannon, G.J.5
  • 11
    • 23044470630 scopus 로고    scopus 로고
    • Drosophila argonaute-2 is required early in embryogenesis for the assembly of centric/centromeric heterochromatin, nuclear division, nuclear migration, and germ-cell formation
    • Deshpande, G., G. Calhoun, and P. Schedl. 2005. Drosophila argonaute-2 is required early in embryogenesis for the assembly of centric/centromeric heterochromatin, nuclear division, nuclear migration, and germ-cell formation. Genes Dev. 19:1680-1685.
    • (2005) Genes Dev. , vol.19 , pp. 1680-1685
    • Deshpande, G.1    Calhoun, G.2    Schedl, P.3
  • 12
    • 23744492247 scopus 로고    scopus 로고
    • The developmental timing regulator AIN-1 interacts with miRISCs and may target the Argonaute protein ALG-1 to cytoplasmic P bodies in C. elegans
    • Ding, L., A. Spencer, K. Morita, and M. Han. 2005. The developmental timing regulator AIN-1 interacts with miRISCs and may target the Argonaute protein ALG-1 to cytoplasmic P bodies in C. elegans. Mol. Cell 19:437-447.
    • (2005) Mol. Cell , vol.19 , pp. 437-447
    • Ding, L.1    Spencer, A.2    Morita, K.3    Han, M.4
  • 17
    • 0035839109 scopus 로고    scopus 로고
    • Argonaute2, a link between genetic and biochemical analyses of RNAi
    • Hammond, S. M., S. Boettcher, A. A. Caudy, R. Kobayashi, and G. J. Hannon. 2001. Argonaute2, a link between genetic and biochemical analyses of RNAi. Science 293:1146-1150.
    • (2001) Science , vol.293 , pp. 1146-1150
    • Hammond, S.M.1    Boettcher, S.2    Caudy, A.A.3    Kobayashi, R.4    Hannon, G.J.5
  • 20
    • 0037975554 scopus 로고    scopus 로고
    • Molecular paleontology of transposable elements in the Drosophila melanogaster genome
    • Kapitonov, V. V., and J. Jurka. 2003. Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc. Natl. Acad. Sci. USA 100:6569-6574.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 6569-6574
    • Kapitonov, V.V.1    Jurka, J.2
  • 21
    • 0035955374 scopus 로고    scopus 로고
    • Identification of novel genes coding for small expressed RNAs
    • Lagos-Quintana, M., R. Rauhut, W. Lendeckel, and T. Tuschl. 2001. Identification of novel genes coding for small expressed RNAs. Science 294:853-858.
    • (2001) Science , vol.294 , pp. 853-858
    • Lagos-Quintana, M.1    Rauhut, R.2    Lendeckel, W.3    Tuschl, T.4
  • 23
    • 21244448730 scopus 로고    scopus 로고
    • Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development
    • Leaman, D., P. Y. Chen, J. Fak, A. Yalcin, M. Pearce, U. Unnerstall, D. S. Marks, C. Sander, T. Tuschl, and U. Gaul. 2005. Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development. Cell 121:1097-1108.
    • (2005) Cell , vol.121 , pp. 1097-1108
    • Leaman, D.1    Chen, P.Y.2    Fak, J.3    Yalcin, A.4    Pearce, M.5    Unnerstall, U.6    Marks, D.S.7    Sander, C.8    Tuschl, T.9    Gaul, U.10
  • 25
    • 1842816517 scopus 로고    scopus 로고
    • Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
    • Lee, Y. S., K. Nakahara, J. W. Pham, K. Kim, Z. He, E. J. Sontheimer, and R. W. Carthew. 2004. Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. Cell 117:69-81.
    • (2004) Cell , vol.117 , pp. 69-81
    • Lee, Y.S.1    Nakahara, K.2    Pham, J.W.3    Kim, K.4    He, Z.5    Sontheimer, E.J.6    Carthew, R.W.7
  • 27
    • 0345359925 scopus 로고    scopus 로고
    • Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain
    • Lingel, A., B. Simon, E. Izaurralde, and M. Sattler. 2003. Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain. Nature 426:465-469.
    • (2003) Nature , vol.426 , pp. 465-469
    • Lingel, A.1    Simon, B.2    Izaurralde, E.3    Sattler, M.4
  • 28
    • 4644312235 scopus 로고    scopus 로고
    • The role of RNA interference in heterochromatic silencing
    • Lippman, Z., and R. Martienssen. 2004. The role of RNA interference in heterochromatic silencing. Nature 431:364-370.
    • (2004) Nature , vol.431 , pp. 364-370
    • Lippman, Z.1    Martienssen, R.2
  • 30
    • 22144478256 scopus 로고    scopus 로고
    • MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
    • Liu, J., M. A. Valencia-Sanchez, G. J. Hannon, and R. Parker. 2005. MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies. Nat. Cell Biol. 7:719-723.
    • (2005) Nat. Cell Biol. , vol.7 , pp. 719-723
    • Liu, J.1    Valencia-Sanchez, M.A.2    Hannon, G.J.3    Parker, R.4
  • 32
    • 15844371219 scopus 로고    scopus 로고
    • Structural basis for 5′-end-specific recognition of guide RNA by the A. fulgidus Piwi protein
    • Ma, J. B., Y. R. Yuan, G. Meister, Y. Pei, T. Tuschl, and D. J. Patel. 2005. Structural basis for 5′-end-specific recognition of guide RNA by the A. fulgidus Piwi protein. Nature 434:666-670.
    • (2005) Nature , vol.434 , pp. 666-670
    • Ma, J.B.1    Yuan, Y.R.2    Meister, G.3    Pei, Y.4    Tuschl, T.5    Patel, D.J.6
  • 33
    • 4644223259 scopus 로고    scopus 로고
    • Mechanisms of gene silencing by double-stranded RNA
    • Meister, G., and T. Tuschl. 2004. Mechanisms of gene silencing by double-stranded RNA. Nature 431:343-349.
    • (2004) Nature , vol.431 , pp. 343-349
    • Meister, G.1    Tuschl, T.2
  • 35
    • 28444437427 scopus 로고    scopus 로고
    • Slicer function of Drosophila Argonautes and its involvement in RISC formation
    • Miyoshi, K., H. Tsukumo, T. Nagami, H. Siomi, and M. C. Siomi. 2005. Slicer function of Drosophila Argonautes and its involvement in RISC formation. Genes Dev. 19:2837-2848.
    • (2005) Genes Dev. , vol.19 , pp. 2837-2848
    • Miyoshi, K.1    Tsukumo, H.2    Nagami, T.3    Siomi, H.4    Siomi, M.C.5
  • 36
    • 3142729150 scopus 로고    scopus 로고
    • Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways
    • Okamura, K., A. Ishizuka, H. Siomi, and M. C. Siomi. 2004. Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways. Genes Dev. 18:1655-1666.
    • (2004) Genes Dev. , vol.18 , pp. 1655-1666
    • Okamura, K.1    Ishizuka, A.2    Siomi, H.3    Siomi, M.C.4
  • 37
    • 0942279615 scopus 로고    scopus 로고
    • Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery
    • Pal-Bhadra, M., B. A. Leibovitch, S. G. Gandhi, M. Rao, U. Bhadra, J. A. Birchler, and S. C. Elgin. 2004. Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science 303:669-672.
    • (2004) Science , vol.303 , pp. 669-672
    • Pal-Bhadra, M.1    Leibovitch, B.A.2    Gandhi, S.G.3    Rao, M.4    Bhadra, U.5    Birchler, J.A.6    Elgin, S.C.7
  • 38
    • 15844402005 scopus 로고    scopus 로고
    • Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex
    • Parker, J. S., S. M. Roe, and D. Barford. 2005. Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex. Nature 434:663-666.
    • (2005) Nature , vol.434 , pp. 663-666
    • Parker, J.S.1    Roe, S.M.2    Barford, D.3
  • 40
    • 5144225452 scopus 로고    scopus 로고
    • Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity
    • Rand, T. A., K. Ginalski, N. V. Grishin, and X. Wang. 2004. Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity. Proc. Natl. Acad. Sci. USA 101:14385-14389.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 14385-14389
    • Rand, T.A.1    Ginalski, K.2    Grishin, N.V.3    Wang, X.4
  • 42
    • 25844442472 scopus 로고    scopus 로고
    • A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing
    • Rehwinkel, J., I. Bebm-Ansmant, D. Gatfield, and E. Izaurralde. 2005. A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing. RNA 11:1640-1647.
    • (2005) RNA , vol.11 , pp. 1640-1647
    • Rehwinkel, J.1    Bebm-Ansmant, I.2    Gatfield, D.3    Izaurralde, E.4
  • 43
    • 15244354492 scopus 로고    scopus 로고
    • Incorporating structure to predict microRNA targets
    • Robins H., Y. Li., and R. W. Padgett. 2005. Incorporating structure to predict microRNA targets. Proc. Natl. Acad. Sci. USA 102:4006-4009.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 4006-4009
    • Robins, H.1    Li, Y.2    Padgett, R.W.3
  • 44
    • 22144432980 scopus 로고    scopus 로고
    • RNAi and the P-body connection
    • Rossi, J. J. 2005. RNAi and the P-body connection. Nat. Cell Biol. 7:643-644.
    • (2005) Nat. Cell Biol. , vol.7 , pp. 643-644
    • Rossi, J.J.1
  • 45
    • 20444427566 scopus 로고    scopus 로고
    • Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies
    • Sen, G. L., and H. M. Blau. 2005. Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies. Nat. Cell Biol. 7:633-636.
    • (2005) Nat. Cell Biol. , vol.7 , pp. 633-636
    • Sen, G.L.1    Blau, H.M.2
  • 47
    • 4444302947 scopus 로고    scopus 로고
    • Crystal structure of Argonaute and its implications for RISC slicer activity
    • Song, J. J., S. K. Smith, G. J. Hannon, and L. Joshua-Tor. 2004. Crystal structure of Argonaute and its implications for RISC slicer activity. Science 305:1434-1437.
    • (2004) Science , vol.305 , pp. 1434-1437
    • Song, J.J.1    Smith, S.K.2    Hannon, G.J.3    Joshua-Tor, L.4
  • 49
    • 28944439309 scopus 로고    scopus 로고
    • Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution
    • Stark, A., J. Brennecke, N. Bushati, R. B. Russell, and S. M. Cohen. 2005. Animal microRNAs confer robustness to gene expression and have a significant impact on 3′UTR evolution. Cell 123:1133-1146.
    • (2005) Cell , vol.123 , pp. 1133-1146
    • Stark, A.1    Brennecke, J.2    Bushati, N.3    Russell, R.B.4    Cohen, S.M.5
  • 50
    • 2442650370 scopus 로고    scopus 로고
    • The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
    • Vaucheret, H., F. Vazquez, P. Crete, and D. P. Bartel. 2004. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev. 18:1187-1197.
    • (2004) Genes Dev. , vol.18 , pp. 1187-1197
    • Vaucheret, H.1    Vazquez, F.2    Crete, P.3    Bartel, D.P.4
  • 51
    • 0037076320 scopus 로고    scopus 로고
    • ARGONAUTE1 is required for efficient RNA interference in Drosophila embryos
    • Williams, R. W., and G. M. Rubin. 2002. ARGONAUTE1 is required for efficient RNA interference in Drosophila embryos. Proc. Natl. Acad. Sci. USA 99:6889-6894.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 6889-6894
    • Williams, R.W.1    Rubin, G.M.2
  • 52
    • 0038076109 scopus 로고    scopus 로고
    • Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation
    • Xie, Z., K. D. Kasschau, and J. C. Carrington. 2003. Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr. Biol. 13:784-789.
    • (2003) Curr. Biol. , vol.13 , pp. 784-789
    • Xie, Z.1    Kasschau, K.D.2    Carrington, J.C.3
  • 53
    • 0642345790 scopus 로고    scopus 로고
    • Structure and conserved RNA binding of the PAZ domain
    • Yan, K. S., S. Yan, A. Farooq, A. Han, L. Zeng, and M. M. Zhou. 2003. Structure and conserved RNA binding of the PAZ domain. Nature 426:468-474.
    • (2003) Nature , vol.426 , pp. 468-474
    • Yan, K.S.1    Yan, S.2    Farooq, A.3    Han, A.4    Zeng, L.5    Zhou, M.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.