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Volumn 30, Issue 19, 2002, Pages 4186-4198

Temperature-sensitive mutants of the exosome subunit Rrp43p show a deficiency in mRNA degradation and no longer interact with the exosome

Author keywords

[No Author keywords available]

Indexed keywords

EXONUCLEASE; FUNGAL PROTEIN; MESSENGER RNA; MUTANT PROTEIN; PROTEIN SUBUNIT; RIBOSOME RNA;

EID: 0036799218     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkf545     Document Type: Review
Times cited : (28)

References (53)
  • 1
    • 0029871812 scopus 로고    scopus 로고
    • Mechanisms and control of mRNA turnover on Saccharomyces cerevisiae
    • Caponigro,G, and Parker,R. (1996) Mechanisms and control of mRNA turnover on Saccharomyces cerevisiae. Microbiol. Rev., 60, 233-249.
    • (1996) Microbiol. Rev , vol.60 , pp. 233-249
    • Caponigro, G.1    Parker, R.2
  • 5
    • 0029618257 scopus 로고
    • Processing of pre-ribosomal RNA in Saccharomyces cerevisiae
    • Venema,J. and Tollervey,D. (1995) Processing of pre-ribosomal RNA in Saccharomyces cerevisiae. Yeast, 11, 1629-1650.
    • (1995) Yeast , vol.11 , pp. 1629-1650
    • Venema, J.1    Tollervey, D.2
  • 6
    • 0034548433 scopus 로고    scopus 로고
    • The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5′-to-3′ exonucleases
    • Geerlings,T.H., Vos,J.C. and Raué,H.A. (2000) The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5′-to-3′ exonucleases. RNA, 6, 1698-1703.
    • (2000) RNA , vol.6 , pp. 1698-1703
    • Geerlings, T.H.1    Vos, J.C.2    Raué, H.A.3
  • 7
    • 0028342849 scopus 로고
    • The 5′ end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site
    • Henry,Y., Wood,H., Morrissey,J.P., Petfalski,E., Kearsey,S. and Tollervey,D. (1994) The 5′ end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site. EMBO J., 13, 2452-2463.
    • (1994) EMBO J , vol.13 , pp. 2452-2463
    • Henry, Y.1    Wood, H.2    Morrissey, J.P.3    Petfalski, E.4    Kearsey, S.5    Tollervey, D.6
  • 8
    • 0027214097 scopus 로고
    • Yeast cells lacking 5′→3′ exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5′ cap structure
    • Hsu,C.L. and Stevens,A. (1993) Yeast cells lacking 5′→3′ exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5′ cap structure. Mol. Cell. Biol., 13, 4826-4835.
    • (1993) Mol. Cell. Biol , vol.13 , pp. 4826-4835
    • Hsu, C.L.1    Stevens, A.2
  • 9
    • 0025720230 scopus 로고
    • Fragments of the internal transcribed spacer1 of pre-rRNA accumulate in Saccharomyces cerevisiae lacking 5′→3′ exoribonuclease 1
    • Stevens,A., Hsu,C.L., Isham,K.R. and Larimer,F.W. (1991) Fragments of the internal transcribed spacer1 of pre-rRNA accumulate in Saccharomyces cerevisiae lacking 5′→3′ exoribonuclease 1. J. Bacteriol., 173, 7024-7028.
    • (1991) J. Bacteriol , vol.173 , pp. 7024-7028
    • Stevens, A.1    Hsu, C.L.2    Isham, K.R.3    Larimer, F.W.4
  • 11
    • 0033960962 scopus 로고    scopus 로고
    • A nuclear 3′-5′ exonuclease involved in mRNA degradation interacts with poly(A) polymerase and the hnRNA protein Np13p
    • Burkard,K.T. and Butler,J.S. (2000) A nuclear 3′-5′ exonuclease involved in mRNA degradation interacts with poly(A) polymerase and the hnRNA protein Np13p. Mol. Cell. Biol., 20, 604-616.
    • (2000) Mol. Cell. Biol , vol.20 , pp. 604-616
    • Burkard, K.T.1    Butler, J.S.2
  • 12
    • 0034653440 scopus 로고    scopus 로고
    • Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast
    • van Hoof,A., Lennertz,P. and Parker,R. (2000) Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast. EMBO J., 19, 1357-1365.
    • (2000) EMBO J , vol.19 , pp. 1357-1365
    • van Hoof, A.1    Lennertz, P.2    Parker, R.3
  • 13
    • 0033981301 scopus 로고    scopus 로고
    • Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
    • van Hoof,A., Lennertz,P. and Parker,R. (2000) Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs. Mol. Cell. Biol., 20, 441-452.
    • (2000) Mol. Cell. Biol , vol.20 , pp. 441-452
    • van Hoof, A.1    Lennertz, P.2    Parker, R.3
  • 14
    • 0030702085 scopus 로고    scopus 로고
    • The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′-5′ exoribonucleases
    • Mitchell,P., Petfalsky,E., Shevchenko,A., Mann,M. and Tollervey,D. (1997) The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′-5′ exoribonucleases. Cell, 91, 457-466.
    • (1997) Cell , vol.91 , pp. 457-466
    • Mitchell, P.1    Petfalsky, E.2    Shevchenko, A.3    Mann, M.4    Tollervey, D.5
  • 16
    • 0035898660 scopus 로고    scopus 로고
    • The exosome of Trypanosoma brucei
    • Estévez,A.M., Kempf,T. and Clayton,C. (2001) The exosome of Trypanosoma brucei. EMBO J., 20, 3831-3839.
    • (2001) EMBO J , vol.20 , pp. 3831-3839
    • Estévez, A.M.1    Kempf, T.2    Clayton, C.3
  • 17
    • 0034693061 scopus 로고    scopus 로고
    • Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells
    • Chekanova,J.A., Shaw,R.J., Wills,M.A. and Belostotsky,D.A. (2000) Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells. J. Biol. Chem., 275, 33158-33166.
    • (2000) J. Biol. Chem , vol.275 , pp. 33158-33166
    • Chekanova, J.A.1    Shaw, R.J.2    Wills, M.A.3    Belostotsky, D.A.4
  • 18
    • 0000577868 scopus 로고    scopus 로고
    • The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex
    • Jacobs-Anderson,J.S. and Parker,R. (1998) The 3′ to 5′ degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′ exonucleases of the exosome complex. EMBO J., 17, 1497-1506.
    • (1998) EMBO J , vol.17 , pp. 1497-1506
    • Jacobs-Anderson, J.S.1    Parker, R.2
  • 19
    • 0033777266 scopus 로고    scopus 로고
    • Function of the ski4p (Cs14p) and Ski7p proteins in 3′-to-5′ degradation of mRNA
    • van Hoof,A., Staples,R.R., Baker,R.E. and Parker,R. (2000) Function of the ski4p (Cs14p) and Ski7p proteins in 3′-to-5′ degradation of mRNA. Mol. Cell. Biol., 20, 8230-8243.
    • (2000) Mol. Cell. Biol , vol.20 , pp. 8230-8243
    • van Hoof, A.1    Staples, R.R.2    Baker, R.E.3    Parker, R.4
  • 21
    • 0037080834 scopus 로고    scopus 로고
    • The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements
    • Mukherjee,D., Gao,M., O'Connor,J.P., Raijmakers,R., Pruijn,G., Lutz,C.S. and Wilusz,J. (2002) The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements. EMBO J., 21, 165-174.
    • (2002) EMBO J , vol.21 , pp. 165-174
    • Mukherjee, D.1    Gao, M.2    O'Connor, J.P.3    Raijmakers, R.4    Pruijn, G.5    Lutz, C.S.6    Wilusz, J.7
  • 22
    • 0035861864 scopus 로고    scopus 로고
    • Functional link between the mammalian exosome and mRNA decapping
    • Wang,Z. and Kiledjian,M. (2001) Functional link between the mammalian exosome and mRNA decapping. Cell. 107, 751-762.
    • (2001) Cell , vol.107 , pp. 751-762
    • Wang, Z.1    Kiledjian, M.2
  • 23
    • 0032557455 scopus 로고    scopus 로고
    • Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8S rRNA 3′ end formation
    • Briggs,M.W., Burkard,K.T.D. and Butler,J.S. (1998) Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8S rRNA 3′ end formation. J. Biol. Chem., 273, 13255-13263.
    • (1998) J. Biol. Chem , vol.273 , pp. 13255-13263
    • Briggs, M.W.1    Burkard, K.T.D.2    Butler, J.S.3
  • 24
    • 0032727868 scopus 로고    scopus 로고
    • The exosome: A proteasome for RNA?
    • van Hoof,A. and Parker,R. (1999) The exosome: a proteasome for RNA? Cell, 99, 347-350.
    • (1999) Cell , vol.99 , pp. 347-350
    • van Hoof, A.1    Parker, R.2
  • 25
    • 0030745619 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae Nip7p is required for efficient 60S ribosome subunit biogenesis
    • Zanchin,N.I.T., Roberts,P., DeSilva,A., Sherman,F. and Goldfarb,D.S. (1997) Saccharomyces cerevisiae Nip7p is required for efficient 60S ribosome subunit biogenesis. Mol. Cell. Biol., 17, 5001-5015.
    • (1997) Mol. Cell. Biol , vol.17 , pp. 5001-5015
    • Zanchin, N.I.T.1    Roberts, P.2    DeSilva, A.3    Sherman, F.4    Goldfarb, D.S.5
  • 26
    • 0032938118 scopus 로고    scopus 로고
    • Nip7p interacts with Nop8p, an essential nucleolar protein required for 60S ribosome biogenesis, and the exosome subunit Rrp43p
    • Zanchin,N.I.T. and Goldfarb,D.S. (1999) Nip7p interacts with Nop8p, an essential nucleolar protein required for 60S ribosome biogenesis, and the exosome subunit Rrp43p. Mol. Cell. Biol., 19, 1518-1525.
    • (1999) Mol. Cell. Biol , vol.19 , pp. 1518-1525
    • Zanchin, N.I.T.1    Goldfarb, D.S.2
  • 27
    • 0033105059 scopus 로고    scopus 로고
    • The exosome subunit Rrp43p is required for the efficient maturation of 5.8S, 18S and 25S rRNA
    • Zanchin,N.I.T. and Goldfarb,D.S. (1999) The exosome subunit Rrp43p is required for the efficient maturation of 5.8S, 18S and 25S rRNA. Nucleic Acids Res., 27, 1283-1288.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1283-1288
    • Zanchin, N.I.T.1    Goldfarb, D.S.2
  • 28
    • 0025940629 scopus 로고
    • The two-hybrid system: A method to identify and clone genes for proteins that interact with a protein of interest
    • Chien,C.T., Bartel,P.L., Sternglanz,R. and Fields,S. (1991) The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest. Proc. Natl Acad. Sci. USA, 88, 9578-9582.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 9578-9582
    • Chien, C.T.1    Bartel, P.L.2    Sternglanz, R.3    Fields, S.4
  • 31
    • 0030455820 scopus 로고    scopus 로고
    • Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
    • James,P., Halladay,J. and Craig,E.A. (1996) Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics, 144, 1425-1436.
    • (1996) Genetics , vol.144 , pp. 1425-1436
    • James, P.1    Halladay, J.2    Craig, E.A.3
  • 32
    • 0029953712 scopus 로고    scopus 로고
    • Green fluorescent protein as a marker for gene expression and subcellular localization in budding yeast
    • Niedentlial,R.K, Riles,L., Johnston,M. and Hegemann,J.H. (1996) Green fluorescent protein as a marker for gene expression and subcellular localization in budding yeast. Yeast, 12, 773-786.
    • (1996) Yeast , vol.12 , pp. 773-786
    • Niedentlial, R.K.1    Riles, L.2    Johnston, M.3    Hegemann, J.H.4
  • 33
    • 0024266139 scopus 로고
    • New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites
    • Gietz,R.D. and Sugino,A. (1988) New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene, 74, 527-534.
    • (1988) Gene , vol.74 , pp. 527-534
    • Gietz, R.D.1    Sugino, A.2
  • 35
    • 0026501752 scopus 로고
    • A rapid method for localized mutagenesis of yeast genes
    • Mulhrad,D., Hunter,R. and Parker,R. (1992) A rapid method for localized mutagenesis of yeast genes. Yeast, 8, 79-82.
    • (1992) Yeast , vol.8 , pp. 79-82
    • Mulhrad, D.1    Hunter, R.2    Parker, R.3
  • 36
    • 0026599048 scopus 로고
    • One step transformation of yeast in stationary phase
    • Chen,D.C., Yang,B.C. and Kuo,T.T. (1992) One step transformation of yeast in stationary phase. Curr. Genet., 21, 83-84.
    • (1992) Curr. Genet , vol.21 , pp. 83-84
    • Chen, D.C.1    Yang, B.C.2    Kuo, T.T.3
  • 37
    • 0029018708 scopus 로고
    • Identification of a new family of tissue-specific basic helix-loop-helix proteins with a two-hybrid system
    • Hollenberg,S.M., Sternglanz,R., Cheng,P.F. and Weintraub,H. (1995) Identification of a new family of tissue-specific basic helix-loop-helix proteins with a two-hybrid system. Mol. Cell. Biol., 15, 3813-3822.
    • (1995) Mol. Cell. Biol , vol.15 , pp. 3813-3822
    • Hollenberg, S.M.1    Sternglanz, R.2    Cheng, P.F.3    Weintraub, H.4
  • 38
    • 0029099409 scopus 로고
    • Ras-Raf interaction: Two-hybrid analysis
    • Vojtek,A.B. and Hollenberg,S.M. (1995) Ras-Raf interaction: two-hybrid analysis. Methods Enzymol., 255, 331-342.
    • (1995) Methods Enzymol , vol.255 , pp. 331-342
    • Vojtek, A.B.1    Hollenberg, S.M.2
  • 39
    • 0028949735 scopus 로고
    • The relationship between eukaryotic translation and mRNA stability: A short open reading frame strongly inhibits translational initiation and greatly accelerates mRNA degradation in the yeast Saccharomyces cerevisiae
    • Oliveira,C.C. and McCarthy,J.E.G. (1995) The relationship between eukaryotic translation and mRNA stability: a short open reading frame strongly inhibits translational initiation and greatly accelerates mRNA degradation in the yeast Saccharomyces cerevisiae. J. Biol. Chem., 270, 8936-8943.
    • (1995) J. Biol. Chem , vol.270 , pp. 8936-8943
    • Oliveira, C.C.1    McCarthy, J.E.G.2
  • 40
    • 0015637381 scopus 로고
    • Mode of action of thiolutin, an inhibitor of macromolecular synthesis in Saccharomyces cerevisiae
    • Jimenez,A., Tipper,D.J. and Davies,J. (1973) Mode of action of thiolutin, an inhibitor of macromolecular synthesis in Saccharomyces cerevisiae. Antimicrob. Agents Chemother., 3, 729-738.
    • (1973) Antimicrob. Agents Chemother , vol.3 , pp. 729-738
    • Jimenez, A.1    Tipper, D.J.2    Davies, J.3
  • 41
    • 0027320701 scopus 로고
    • A turnover pathway for both stable and unstable mRNAs in yeast: Evidence for a requirement for deadenylation
    • Decker,C.J. and Parker,R. (1993) A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation. Genes Dev., 7, 1632-1643.
    • (1993) Genes Dev , vol.7 , pp. 1632-1643
    • Decker, C.J.1    Parker, R.2
  • 42
    • 0032481316 scopus 로고    scopus 로고
    • Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3′ end formation of 5.8S rRNA in Saccharomyces cerevisiae
    • de la Cruz,J., Kressler,D., Tollervey,D. and Linder,P. (1998) Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3′ end formation of 5.8S rRNA in Saccharomyces cerevisiae. EMBO J., 17, 1128-1140.
    • (1998) EMBO J , vol.17 , pp. 1128-1140
    • de la Cruz, J.1    Kressler, D.2    Tollervey, D.3    Linder, P.4
  • 43
    • 0026478895 scopus 로고
    • NOP3 is an essential yeast protein which is required for pre-rRNA processing
    • Russel,I.D. and Tollervey,D. (1992) NOP3 is an essential yeast protein which is required for pre-rRNA processing. J. Cell Biol., 119, 737-747.
    • (1992) J. Cell Biol , vol.119 , pp. 737-747
    • Russel, I.D.1    Tollervey, D.2
  • 44
    • 0027536869 scopus 로고
    • Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome biogenesis
    • Tollervey,D., Lehtonen,H., Jansen,R., Kem,H. and Hurt,E.C. (1993) Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome biogenesis. Cell, 72, 443-457.
    • (1993) Cell , vol.72 , pp. 443-457
    • Tollervey, D.1    Lehtonen, H.2    Jansen, R.3    Kem, H.4    Hurt, E.C.5
  • 45
    • 0026740696 scopus 로고
    • The rate-limiting step in yeast PGK1 mRNA degradation is an endonucleolytic cleavage in the 3′-terminal part of the coding region
    • Vreken,P. and Raue,H.A. (1992) The rate-limiting step in yeast PGK1 mRNA degradation is an endonucleolytic cleavage in the 3′-terminal part of the coding region. Mol. Cell. Biol., 12, 2986-2996.
    • (1992) Mol. Cell. Biol , vol.12 , pp. 2986-2996
    • Vreken, P.1    Raue, H.A.2
  • 46
    • 0035878934 scopus 로고    scopus 로고
    • Temperature sensitive nop2 alleles defective in synthesis of 25S rRNA and large ribosomal subunits in Saccharomyces cerevisiae
    • Hong,B., Wu,K., Brockenbrough,J.S., Wu,P. and Aris,J. (2001) Temperature sensitive nop2 alleles defective in synthesis of 25S rRNA and large ribosomal subunits in Saccharomyces cerevisiae. Nucleic Acids Res., 29, 2927-2937.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2927-2937
    • Hong, B.1    Wu, K.2    Brockenbrough, J.S.3    Wu, P.4    Aris, J.5
  • 47
    • 0034664803 scopus 로고    scopus 로고
    • Identification of a regulated pathway for nuclear pre-mRNA turnover
    • Bousquet-Antonelli,C., Presutti,C. and Tollervey,D. (2000) Identification of a regulated pathway for nuclear pre-mRNA turnover. Cell, 102, 765-775.
    • (2000) Cell , vol.102 , pp. 765-775
    • Bousquet-Antonelli, C.1    Presutti, C.2    Tollervey, D.3
  • 48
    • 0025267840 scopus 로고
    • Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae
    • Herrick,D., Parker,R. and Jacobson,A. (1990) Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae. Mol. Cell. Biol., 10, 2269-2284.
    • (1990) Mol. Cell. Biol , vol.10 , pp. 2269-2284
    • Herrick, D.1    Parker, R.2    Jacobson, A.3
  • 49
    • 0028202495 scopus 로고
    • Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to de-capping followed by 5′ to 3′ digestion of the transcript
    • Mulhrad,D., Decker,C.J. and Parker,R. (1994) Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to de-capping followed by 5′ to 3′ digestion of the transcript. Genes Dev., 8, 855-866.
    • (1994) Genes Dev , vol.8 , pp. 855-866
    • Mulhrad, D.1    Decker, C.J.2    Parker, R.3
  • 50
    • 0029939247 scopus 로고    scopus 로고
    • The 3′ end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism
    • Mitchell,P., Petfalsky,E. and Tollervey,D. (1996) The 3′ end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism. Genes Dev., 10, 502-513.
    • (1996) Genes Dev , vol.10 , pp. 502-513
    • Mitchell, P.1    Petfalsky, E.2    Tollervey, D.3
  • 52
    • 0033517098 scopus 로고    scopus 로고
    • Characterization of Sm-like proteins in yeast and their association with U6 snRNA
    • Mayes,A.E., Verdone,L., Legrain,P. and Beggs,J.D. (1999) Characterization of Sm-like proteins in yeast and their association with U6 snRNA. EMBO J., 18, 4321-4331.
    • (1999) EMBO J , vol.18 , pp. 4321-4331
    • Mayes, A.E.1    Verdone, L.2    Legrain, P.3    Beggs, J.D.4
  • 53
    • 0033785798 scopus 로고    scopus 로고
    • Musing on the structural organization of the exosome complex
    • Mitchell,P.and Tollervey,D. (2000) Musing on the structural organization of the exosome complex. Nature Struct. Biol., 7, 843-846.
    • (2000) Nature Struct. Biol , vol.7 , pp. 843-846
    • Mitchell Tollervey, D.1


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