메뉴 건너뛰기




Volumn 28, Issue 5-6, 2006, Pages 259-272

ADAMTS1, CRABP1, and NR3C1 identified as epigenetically deregulated genes in colorectal tumorigenesis

Author keywords

5 aza 2 deoxycytidine; ADAMTS1; Adenomas; Bisulphite sequencing; Colorectal carcinomas; CRABP1; Gene expression; Methylation; Microarrays; NR3C1

Indexed keywords

5 AZA 2' DEOXYCYTIDINE; BISULFITE; GENE PRODUCT; PROTEIN ADAMTS1; PROTEIN CRABP1; PROTEIN NR3C1;

EID: 33845679095     PISSN: 15705870     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (125)

References (62)
  • 4
    • 4143112912 scopus 로고    scopus 로고
    • A disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motifs: The ADAMTS family
    • S.S. Apte, A disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motifs: the ADAMTS family, Int. J. Biochem. Cell Biol. 36 (2004), 981-985.
    • (2004) Int. J. Biochem. Cell Biol. , vol.36 , pp. 981-985
    • Apte, S.S.1
  • 5
    • 0025991753 scopus 로고
    • Molecular cloning of two human cellular retinoic acid-binding proteins (CRABP). Retinoic acid induced expression of CRABP-II but not CRABP-I in adult human skin in vivo and in skin fibroblasts in vitro
    • A. Åstrøm, A. Tavakkol, U. Pettersson, M. Cromie, J.T. Elder and J.J. Voorhees, Molecular cloning of two human cellular retinoic acid-binding proteins (CRABP). Retinoic acid induced expression of CRABP-II but not CRABP-I in adult human skin in vivo and in skin fibroblasts in vitro, J. Biol. Chem. 266 (1991), 17662-17666.
    • (1991) J. Biol. Chem. , vol.266 , pp. 17662-17666
    • Åstrøm, A.1    Tavakkol, A.2    Pettersson, U.3    Cromie, M.4    Elder, J.T.5    Voorhees, J.J.6
  • 6
    • 0031929626 scopus 로고    scopus 로고
    • TP53 and long-term prognosis in colorectal cancer: Mutations in the L3 zinc-binding domain predict poor survival
    • A.L. Børresen-Dale, R.A. Lothe, G.I. Meling, P. Hainaut, T.O. Rognum and E. Skovlund, TP53 and long-term prognosis in colorectal cancer: mutations in the L3 zinc-binding domain predict poor survival, Clin. Cancer Res. 4 (1998), 203-210.
    • (1998) Clin. Cancer Res. , vol.4 , pp. 203-210
    • Børresen-Dale, A.L.1    Lothe, R.A.2    Meling, G.I.3    Hainaut, P.4    Rognum, T.O.5    Skovlund, E.6
  • 7
    • 0038241502 scopus 로고    scopus 로고
    • Variations of the human glucocorticoid receptor gene (NR3C1): Pathological and in vitro mutations and polymorphisms
    • P.J. Bray and R.G. Cotton, Variations of the human glucocorticoid receptor gene (NR3C1): pathological and in vitro mutations and polymorphisms, Hum. Mutat. 21 (2003), 557-568.
    • (2003) Hum. Mutat. , vol.21 , pp. 557-568
    • Bray, P.J.1    Cotton, R.G.2
  • 9
    • 4944240144 scopus 로고    scopus 로고
    • Genetic predisposition to colorectal cancer
    • A. de la Chapelle, Genetic predisposition to colorectal cancer, Nat. Rev. Cancer 4 (2004), 769-780.
    • (2004) Nat. Rev. Cancer , vol.4 , pp. 769-780
    • De La Chapelle, A.1
  • 11
    • 0036753290 scopus 로고    scopus 로고
    • DNA methylation: A profile of methods and applications
    • M.F. Fraga and M. Esteller, DNA methylation: a profile of methods and applications, Biotechniques 33 (2002), 632-649.
    • (2002) Biotechniques , vol.33 , pp. 632-649
    • Fraga, M.F.1    Esteller, M.2
  • 13
    • 0032619951 scopus 로고    scopus 로고
    • Glucocorticosteroid therapy in childhood acute lymphoblastic leukemia
    • P.S. Gaynon and A.L. Carrel, Glucocorticosteroid therapy in childhood acute lymphoblastic leukemia, Adv. Exp. Med. Biol. 457 (1999), 593-605.
    • (1999) Adv. Exp. Med. Biol. , vol.457 , pp. 593-605
    • Gaynon, P.S.1    Carrel, A.L.2
  • 14
    • 0029964835 scopus 로고    scopus 로고
    • A novel method for real time quantitative RT-PCR
    • U.E. Gibson, C.A. Heid and P.M. Williams, A novel method for real time quantitative RT-PCR, Genome Res. 6 (1996), 995-1001.
    • (1996) Genome Res. , vol.6 , pp. 995-1001
    • Gibson, U.E.1    Heid, C.A.2    Williams, P.M.3
  • 16
    • 0035407651 scopus 로고    scopus 로고
    • Bisulfite genomic sequencing: Systematic investigation of critical experimental parameters
    • C. Grunau, S.J. Clark and A. Rosenthal, Bisulfite genomic sequencing: systematic investigation of critical experimental parameters, Nucleic Acids Res. 29 (2001), E65.
    • (2001) Nucleic Acids Res. , vol.29
    • Grunau, C.1    Clark, S.J.2    Rosenthal, A.3
  • 17
    • 0033972140 scopus 로고    scopus 로고
    • Drg-1 as a differentiation-related, putative metastatic suppressor gene in human colon cancer
    • R.J. Guan, H.L. Ford, Y. Fu, Y. Li, L.M. Shaw and A.B. Pardee, Drg-1 as a differentiation-related, putative metastatic suppressor gene in human colon cancer, Cancer Res. 60 (2000), 749-755.
    • (2000) Cancer Res. , vol.60 , pp. 749-755
    • Guan, R.J.1    Ford, H.L.2    Fu, Y.3    Li, Y.4    Shaw, L.M.5    Pardee, A.B.6
  • 21
    • 0037431507 scopus 로고    scopus 로고
    • Hypermethylation, but not LOH, is associated with the low expression of MT1G and CRABP1 in papillary thyroid carcinoma
    • Y. Huang, C.A. de la Chapelle and N.S. Pellegata, Hypermethylation, but not LOH, is associated with the low expression of MT1G and CRABP1 in papillary thyroid carcinoma, Int. J. Cancer 104 (2003), 735-744.
    • (2003) Int. J. Cancer , vol.104 , pp. 735-744
    • Huang, Y.1    De La Chapelle, C.A.2    Pellegata, N.S.3
  • 22
    • 0036274359 scopus 로고    scopus 로고
    • The fundamental role of epigenetic events in cancer
    • P.A. Jones and S.B. Baylin, The fundamental role of epigenetic events in cancer, Nat. Rev. Genet. 3 (2002), 415-428.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 415-428
    • Jones, P.A.1    Baylin, S.B.2
  • 24
    • 2942541805 scopus 로고    scopus 로고
    • The carboxyl-terminal half region of ADAMTS-1 suppresses both tumorigenicity and experimental tumor metastatic potential
    • K. Kuno, K. Bannai, M. Hakozaki, K. Matsushima and K. Hirose, The carboxyl-terminal half region of ADAMTS-1 suppresses both tumorigenicity and experimental tumor metastatic potential, Biochem. Biophys. Res. Commun. 319 (2004), 1327-1333.
    • (2004) Biochem. Biophys. Res. Commun. , vol.319 , pp. 1327-1333
    • Kuno, K.1    Bannai, K.2    Hakozaki, M.3    Matsushima, K.4    Hirose, K.5
  • 25
    • 0031036524 scopus 로고    scopus 로고
    • Molecular cloning of a gene encoding a new type of metalloproteinase- disintegrin family protein with thrombospondin motifs as an inflammation associated gene
    • K. Kuno, N. Kanada, E. Nakashima, F. Fujiki, F. Ichimura and K. Matsushima, Molecular cloning of a gene encoding a new type of metalloproteinase-disintegrin family protein with thrombospondin motifs as an inflammation associated gene, J. Biol. Chem. 272 (1997), 556-562.
    • (1997) J. Biol. Chem. , vol.272 , pp. 556-562
    • Kuno, K.1    Kanada, N.2    Nakashima, E.3    Fujiki, F.4    Ichimura, F.5    Matsushima, K.6
  • 26
    • 3042693554 scopus 로고    scopus 로고
    • Aberrant CpG island hypermethylation of multiple genes in colorectal neoplasia
    • S. Lee, K.S. Hwang, H.J. Lee, J.S. Kim and G.H. Kang, Aberrant CpG island hypermethylation of multiple genes in colorectal neoplasia, Lab. Invest. 84 (2004), 884-893.
    • (2004) Lab. Invest. , vol.84 , pp. 884-893
    • Lee, S.1    Hwang, K.S.2    Lee, H.J.3    Kim, J.S.4    Kang, G.H.5
  • 27
    • 0036856355 scopus 로고    scopus 로고
    • MethPrimer: Designing primers for methylation PCRs
    • L.C. Li and R. Dahiya, MethPrimer: designing primers for methylation PCRs, Bioinformatics 18 (2002), 1427-1431.
    • (2002) Bioinformatics , vol.18 , pp. 1427-1431
    • Li, L.C.1    Dahiya, R.2
  • 28
    • 0036171225 scopus 로고    scopus 로고
    • Analysis of gene induction in human fibroblasts and bladder cancer cells exposed to the methylation inhibitor 5-aza-2′-deoxycytidine
    • G. Liang, F.A. Gonzales, P.A. Jones, T.F. Orntoft and T. Thykjaer, Analysis of gene induction in human fibroblasts and bladder cancer cells exposed to the methylation inhibitor 5-aza-2′-deoxycytidine, Cancer Res. 62 (2002), 961-966.
    • (2002) Cancer Res. , vol.62 , pp. 961-966
    • Liang, G.1    Gonzales, F.A.2    Jones, P.A.3    Orntoft, T.F.4    Thykjaer, T.5
  • 30
    • 20144383392 scopus 로고    scopus 로고
    • Functional epigenomics identifies genes frequently silenced in prostate cancer
    • D. Lodygin, A. Epanchintsev, A. Menssen, J. Diebold and H. Hermeking, Functional epigenomics identifies genes frequently silenced in prostate cancer, Cancer Res. 65 (2005), 4218-4227.
    • (2005) Cancer Res. , vol.65 , pp. 4218-4227
    • Lodygin, D.1    Epanchintsev, A.2    Menssen, A.3    Diebold, J.4    Hermeking, H.5
  • 32
    • 0038109791 scopus 로고    scopus 로고
    • ADAMTS1/METH1 inhibits endothelial cell proliferation by direct binding and sequestration of VEGF165
    • A. Luque, D.R. Carpizo and M.L. Iruela-Arispe, ADAMTS1/METH1 inhibits endothelial cell proliferation by direct binding and sequestration of VEGF165, J. Biol. Chem. 278 (2003), 23656-23665.
    • (2003) J. Biol. Chem. , vol.278 , pp. 23656-23665
    • Luque, A.1    Carpizo, D.R.2    Iruela-Arispe, M.L.3
  • 34
    • 0025861946 scopus 로고
    • Genetic alterations within the retinoblastoma locus in colorectal carcinomas. Relation to DNA ploidy pattern studied by flow cytometric analysis
    • G.I. Meling, R.A. Lothe, A.L. Børresen, S. Hauge, C. Graue, O.P. Clausen and T.O. Rognum, Genetic alterations within the retinoblastoma locus in colorectal carcinomas. Relation to DNA ploidy pattern studied by flow cytometric analysis, Br. J. Cancer 64 (1991), 475-480.
    • (1991) Br. J. Cancer , vol.64 , pp. 475-480
    • Meling, G.I.1    Lothe, R.A.2    Børresen, A.L.3    Hauge, S.4    Graue, C.5    Clausen, O.P.6    Rognum, T.O.7
  • 35
    • 0033179375 scopus 로고    scopus 로고
    • Concurrent DNA hypermethylation of multiple genes in acute myeloid leukemia
    • J.R. Melki, P.C. Vincent and S.J. Clark, Concurrent DNA hypermethylation of multiple genes in acute myeloid leukemia, Cancer Res. 59 (1999), 3730-3740.
    • (1999) Cancer Res. , vol.59 , pp. 3730-3740
    • Melki, J.R.1    Vincent, P.C.2    Clark, S.J.3
  • 38
    • 5444251719 scopus 로고    scopus 로고
    • Signaling pathways in retinoid chemoprevention and treatment of cancer
    • R.M. Niles, Signaling pathways in retinoid chemoprevention and treatment of cancer, Mutat. Res. 555 (2004), 81-96.
    • (2004) Mutat. Res. , vol.555 , pp. 81-96
    • Niles, R.M.1
  • 39
    • 33745500432 scopus 로고    scopus 로고
    • CpG island methylator phenotype (CIMP) of colorectal cancer is best characterized by quantitative DNA methylation analysis and prospective cohort studies
    • S. Ogino, M. Cantor, T. Kawasaki, M. Brahmandam, G. Kirkner, D.J. Weisenberger, M. Campan, P.W. Laird, M. Loda and C.S. Fuchs, CpG island methylator phenotype (CIMP) of colorectal cancer is best characterized by quantitative DNA methylation analysis and prospective cohort studies, Gut 55 (2006), 1000-1006.
    • (2006) Gut , vol.55 , pp. 1000-1006
    • Ogino, S.1    Cantor, M.2    Kawasaki, T.3    Brahmandam, M.4    Kirkner, G.5    Weisenberger, D.J.6    Campan, M.7    Laird, P.W.8    Loda, M.9    Fuchs, C.S.10
  • 43
    • 0036314222 scopus 로고    scopus 로고
    • Conversion-specific detection of DNA methylation using real-time polymerase chain reaction (ConLight-MSP) to avoid false positives
    • K. Rand, W. Qu, T. Ho, S.J. Clark and P. Molloy, Conversion-specific detection of DNA methylation using real-time polymerase chain reaction (ConLight-MSP) to avoid false positives, Methods 27 (2002), 114-120.
    • (2002) Methods , vol.27 , pp. 114-120
    • Rand, K.1    Qu, W.2    Ho, T.3    Clark, S.J.4    Molloy, P.5
  • 45
    • 0036895068 scopus 로고    scopus 로고
    • Characterisation of colorectal cancers showing hypermethylation at multiple CpG islands
    • M. van Rijnsoever, F. Grieu, H. Elsaleh, D. Joseph and B. Iacopetta, Characterisation of colorectal cancers showing hypermethylation at multiple CpG islands, Gut 51 (2002), 797-802.
    • (2002) Gut , vol.51 , pp. 797-802
    • Van Rijnsoever, M.1    Grieu, F.2    Elsaleh, H.3    Joseph, D.4    Iacopetta, B.5
  • 46
    • 0037099005 scopus 로고    scopus 로고
    • BioArray Software Environment (BASE): A platform for comprehensive management and analysis of microarray data
    • SOFTWARE0003
    • L.H. Saal, C. Troein, J. Vallon-Christersson, S. Gruvberger, A. Borg and C. Peterson, BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data, Genome Biol. 3 (2002), SOFTWARE0003.
    • (2002) Genome Biol. , vol.3
    • Saal, L.H.1    Troein, C.2    Vallon-Christersson, J.3    Gruvberger, S.4    Borg, A.5    Peterson, C.6
  • 48
    • 4344700576 scopus 로고    scopus 로고
    • Glucocorticoid-induced apoptosis and glucocorticoid resistance: Molecular mechanisms and clinical relevance
    • S. Schmidt, J. Rainer, C. Ploner, E. Presul, S. Riml and R. Kofler, Glucocorticoid-induced apoptosis and glucocorticoid resistance: molecular mechanisms and clinical relevance, Cell Death. Differ. 11 Suppl 1 (2004), S45-S55.
    • (2004) Cell Death. Differ. , vol.11 , Issue.SUPPL. 1
    • Schmidt, S.1    Rainer, J.2    Ploner, C.3    Presul, E.4    Riml, S.5    Kofler, R.6
  • 49
    • 3042795223 scopus 로고    scopus 로고
    • Physiological and pathological consequences of the interactions of the p53 tumor suppressor with the glucocorticoid, androgen, and estrogen receptors
    • S. Sengupta and B. Wasylyk, Physiological and pathological consequences of the interactions of the p53 tumor suppressor with the glucocorticoid, androgen, and estrogen receptors, Ann. N. Y. Acad. Sci. 1024 (2004), 54-71.
    • (2004) Ann. N. Y. Acad. Sci. , vol.1024 , pp. 54-71
    • Sengupta, S.1    Wasylyk, B.2
  • 53
    • 0037133565 scopus 로고    scopus 로고
    • Comprehensive analysis of CpG islands in human chromosomes 21 and 22
    • D. Takai and P.A. Jones, Comprehensive analysis of CpG islands in human chromosomes 21 and 22, Proc. Natl. Acad. Sci. U.S.A. 99 (2002), 3740-3745.
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 3740-3745
    • Takai, D.1    Jones, P.A.2
  • 54
    • 0141427894 scopus 로고    scopus 로고
    • Glucocorticoid receptor (GR) immunohistochemical expression is correlated with cell cycle-related molecules in human colon cancer
    • S. Theocharis, G. Kouraklis, A. Margeli, E. Agapitos, S. Ninos, G. Karatzas and A. Koutselinis, Glucocorticoid receptor (GR) immunohistochemical expression is correlated with cell cycle-related molecules in human colon cancer, Dig. Dis. Sci. 48 (2003), 1745-1750.
    • (2003) Dig. Dis. Sci. , vol.48 , pp. 1745-1750
    • Theocharis, S.1    Kouraklis, G.2    Margeli, A.3    Agapitos, E.4    Ninos, S.5    Karatzas, G.6    Koutselinis, A.7
  • 55
    • 0032947335 scopus 로고    scopus 로고
    • Population-based surveillance by colonoscopy: Effect on the incidence of colorectal cancer. Telemark Polyp Study I
    • E. Thiis-Evensen, G.S. Hoff, J. Sauar, F. Langmark, B.M. Majak and M.H. Vatn, Population-based surveillance by colonoscopy: effect on the incidence of colorectal cancer. Telemark Polyp Study I, Scand. J. Gastroenterol. 34 (1999), 414-420.
    • (1999) Scand. J. Gastroenterol. , vol.34 , pp. 414-420
    • Thiis-Evensen, E.1    Hoff, G.S.2    Sauar, J.3    Langmark, F.4    Majak, B.M.5    Vatn, M.H.6
  • 57
    • 0032739329 scopus 로고    scopus 로고
    • CpG island methylator phenotypes in aging and cancer
    • M. Toyota and J.P. Issa, CpG island methylator phenotypes in aging and cancer, Semin. Cancer Biol. 9 (1999), 349-357.
    • (1999) Semin. Cancer Biol. , vol.9 , pp. 349-357
    • Toyota, M.1    Issa, J.P.2
  • 58
    • 0027934626 scopus 로고
    • Demethylation in the 5′-flanking region of mouse cellular retinoic acid binding protein-I gene is associated with its high level of expression in mouse embryos and facilitates its induction by retinoic acid in P19 embryonal carcinoma cells
    • L.N. Wei and C.H. Lee, Demethylation in the 5′-flanking region of mouse cellular retinoic acid binding protein-I gene is associated with its high level of expression in mouse embryos and facilitates its induction by retinoic acid in P19 embryonal carcinoma cells, Dev. Dyn. 201 (1994), 1-10.
    • (1994) Dev. Dyn. , vol.201 , pp. 1-10
    • Wei, L.N.1    Lee, C.H.2
  • 61
    • 0041382819 scopus 로고    scopus 로고
    • Genetics supersedes epigenetics in colon cancer phenotype
    • K. Yamashita, T. Dai, Y. Dai, F. Yamamoto and M. Perucho, Genetics supersedes epigenetics in colon cancer phenotype, Cancer Cell 4 (2003), 121-131.
    • (2003) Cancer Cell , vol.4 , pp. 121-131
    • Yamashita, K.1    Dai, T.2    Dai, Y.3    Yamamoto, F.4    Perucho, M.5
  • 62
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Y.H. Yang, S. Dudoit, P. Luu, D.M. Lin, V. Peng, J. Ngai and T.P. Speed, Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation, Nucleic Acids Res. 30 (2002), e15.
    • (2002) Nucleic Acids Res. , vol.30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.