Genome signatures of colon carcinoma cell lines

Cancer Genetics and Cytogenetics

Volumn 155, Issue 2, 2004, Pages 119-131

  Kleivi, Kristine ^a   Teixeira, Manuel R ^a,b   Eknæs, Mette ^a   Diep, Chieu B ^a   Jakobsen, Kjetill S ^c   Hamelin, Richard ^d   Lothe, Ragnhild A ^a  

^a OSLO UNIVERSITY HOSPITAL   (Norway)

^b PORTUGUESE ONCOLOGY INSTITUTE   (Portugal)

^c UNIVERSITY OF OSLO   (Norway)

^d INSERM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CANCER CELL CULTURE; CHROMOSOME ABERRATION; CHROMOSOME ANALYSIS; CHROMOSOME BANDING PATTERN; CHROMOSOME STRUCTURE; COLON CARCINOMA; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; CYTOGENETICS; FLUORESCENCE IN SITU HYBRIDIZATION; GENETIC DISORDER; GENOME ANALYSIS; HUMAN; HUMAN CELL; KARYOTYPE; KARYOTYPING; MICROSATELLITE INSTABILITY; PRIORITY JOURNAL; TECHNIQUE;

CELL LINE, TUMOR; CHROMOSOMAL INSTABILITY; CHROMOSOME ABERRATIONS; CHROMOSOME BANDING; CLONE CELLS; CLUSTER ANALYSIS; COLONIC NEOPLASMS; GENE EXPRESSION PROFILING; GENOME, HUMAN; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; KARYOTYPING; LIVER NEOPLASMS; MICROSATELLITE REPEATS; NEOPLASM METASTASIS; NUCLEIC ACID HYBRIDIZATION; PERITONEAL NEOPLASMS; PLOIDIES; VARIATION (GENETICS);

EID: 9644295665     PISSN: 01654608     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cancergencyto.2004.03.014     Document Type: Article

References (66)

1. T. Caspersson, L. Zech, C. Johansson, and E.J. Modest Identification of human chromosomes by DNA-binding fluorescent agents Chromosoma 30 1970 215 227
2. A. Kallioniemi, O.P. Kallioniemi, D. Sudar, D. Rutovitz, J.W. Gray, F. Waldman, and D. Pinkel Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors Science 258 1992 818 821
3. E. Schrock, Manoir S. du, T. Veldman, B. Schoell, J. Wienberg, M.A. Ferguson-Smith, Y. Ning, D.H. Ledbetter, I. Bar-Am, D. Soenksen, Y. Garini, and T. Ried Multicolor spectral karyotyping of human chromosomes Science 273 1996 494 497
4. M.R. Speicher, B.S. Gwyn, and D.C. Ward Karyotyping human chromosomes by combinatorial multi-fluor FISH Nat Genet 12 1996 368 375
5. L.A. Loeb Mutator phenotype may be required for multistage carcinogenesis Cancer Res 51 1991 3075 3079
6. S. Heim, and F. Mitelman Cancer cytogenetics 1995 Wiley-Liss USA
7. L.A. Aaltonen, P. Peltomaki, F.S. Leach, P. Sistonen, L. Pylkkanen, J.P. Mecklin, H. Jarvinen, S.M. Powell, J. Jen, and S.R. Hamilton Clues to the pathogenesis of familial colorectal cancer Science 260 1993 812 816
8. Y. Ionov, M.A. Peinado, S. Malkhosyan, D. Shibata, and M. Perucho Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism for colonic carcinogenesis Nature 363 1993 558 561
9. S.N. Thibodeau, G. Bren, and D. Schaid Microsatellite instability in cancer of the proximal colon Science 260 1993 816 819
10. R.A. Lothe, P. Peltomaki, G.I. Meling, L.A. Aaltonen, M. Nystrom-Lahti, L. Pylkkanen, K. Heimdal, T.I. Andersen, P. Moller, and T.O. Rognum Genomic instability in colorectal cancer: relationship to clinicopathological variables and family history Cancer Res 53 1993 5849 5852
11. H.F. Vasen, J.P. Mecklin, P.M. Khan, and H.T. Lynch The International Collaborative Group on Hereditary Non-Polyposis Colorectal Cancer (ICG-HNPCC) Dis Colon Rectum 34 1991 424 425
12. R. Fishel, M.K. Lescoe, M.R. Rao, N.G. Copeland, N.A. Jenkins, J. Garber, M. Kane, and R. Kolodner The human mutator gene homolog MSH2 and its association with hereditary nonpolyposis colon cancer Cell 75 1993 1027 1038
13. J. Gayet, X.P. Zhou, A. Duval, S. Rolland, J.M. Hoang, P. Cottu, and R. Hamelin Extensive characterization of genetic alterations in a series of human colorectal cancer cell lines Oncogene 20 2001 5025 5032
14. J.F. Cajot, I. Sordat, T. Silvestre, and B. Sordat Differential display cloning identifies motility-related protein (MRP1/CD9) as highly expressed in primary compared to metastatic human colon carcinoma cells Cancer Res 57 1997 2593 2597
15. C.B. Diep, M.R. Teixeira, J.N. Wiig, M. Eknæs, J.M. Nesland, K.E. Giercksky, B. Johansson, and R.A. Lothe Genome characteristics of primary carcinomas, local recurrences, carcinomatoses, and liver metastasis from colorectal cancer patients Mol Cancer 3 2004 6
16. N. Pandis, S. Heim, G. Bardi, J. Limon, N. Mandahl, and F. Mitelman Improved technique for short-term culture and cytogenetic analysis of human breast cancer [published erratum appears in Genes Chromosomes Cancer 1992;5:410] Genes Chromosomes Cancer 5 1992 14 20
17. S.M. Kraggerud, J. Szymanska, V.M. Abeler, J. Kaern, M. Eknaes, S. Heim, M.R. Teixeira, C.G. Trope, P. Peltomaki, and R.A. Lothe DNA copy number changes in malignant ovarian germ cell tumors Cancer Res 60 2000 3025 3030
18. B. Dysvik, and I. Jonassen J-Express: exploring gene expression data using Java Bioinformatics 17 2001 369 370
19. F. Mitelman An international system for human cytogenetic nomenclature 1995 S. Karger Basel
20. P.H. Rooney, G.I. Murray, D.A. Stevenson, N.E. Haites, J. Cassidy, and H.L. McLeod Comparative genomic hybridization and chromosomal instability in solid tumours Br J Cancer 80 1999 862 873
21. W.M. Abdel-Rahman, K. Katsura, W. Rens, P.A. Gorman, D. Sheer, D. Bicknell, W.F. Bodmer, M.J. Arends, A.H. Wyllie, and P.A. Edwards Spectral karyotyping suggests additional subsets of colorectal cancers characterized by pattern of chromosome rearrangement Proc Natl Acad Sci USA 98 2001 2538 2543
22. B.M. Ghadimi, D.L. Sackett, M.J. Difilippantonio, E. Schrock, T. Neumann, A. Jauho, G. Auer, and T. Ried Centrosome amplification and instability occurs exclusively in aneuploid, but not in diploid colorectal cancer cell lines, and correlates with numerical chromosomal aberrations Genes Chromosomes Cancer 27 2000 183 190
23. A.V. Roschke, K. Stover, G. Tonon, A.A. Schaffer, and I.R. Kirsch Stable karyotypes in epithelial cancer cell lines despite high rates of ongoing structural and numerical chromosomal instability Neoplasia 4 2002 19 31
24. T. Tsushimi, S. Noshima, A. Oga, K. Esato, and K. Sasaki DNA amplification and chromosomal translocations are accompanied by chromosomal instability: analysis of seven human colon cancer cell lines by comparative genomic hybridization and spectral karyotyping Cancer Genet Cytogenet 126 2001 34 38
25. L. Masramon, M. Ribas, P. Cifuentes, R. Arribas, F. Garcia, J. Egozcue, M.A. Peinado, and R. Miro Cytogenetic characterization of two colon cell lines by using conventional G-banding, comparative genomic hybridization, and whole chromosome painting Cancer Genet Cytogenet 121 2000 17 21
26. D. Pinkel, R. Segraves, D. Sudar, S. Clark, I. Poole, D. Kowbel, C. Collins, W.L. Kuo, C. Chen, Y. Zhai, S.H. Dairkee, B.M. Ljung, J.W. Gray, and D.G. Albertson High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays Nat Genet 20 1998 207 211
27. C. Lengauer, K.W. Kinzler, and B. Vogelstein Genetic instability in colorectal cancers Nature 386 1997 623 627
28. C. Lengauer, K.W. Kinzler, and B. Vogelstein Genetic instabilities in human cancers Nature 396 1998 643 649
29. R.A. Lothe Microsatellite instability in human solid tumors Mol Med Today 3 1997 61 68
30. R. Melcher, S. Koehler, C. Steinlein, M. Schmid, C.R. Mueller, H. Luehrs, T. Menzel, W. Scheppach, H. Moerk, M. Scheurlen, J. Koehrle, and O. Al Taie Spectral karyotype analysis of colon cancer cell lines of the tumor suppressor and mutator pathway Cytogenet Genome Res 98 2002 22 28
31. P.M. De Angelis, O.P. Clausen, A. Schjolberg, and T. Stokke Chromosomal gains and losses in primary colorectal carcinomas detected by CGH and their associations with tumour DNA ploidy, genotypes and phenotypes Br J Cancer 80 1999 526 535
32. C. Schleger, C. Verbeke, R. Hildenbrand, H. Zentgraf, and U. Bleyl c-MYC activation in primary and metastatic ductal adenocarcinoma of the pancreas: incidence, mechanisms, and clinical significance Mod Pathol 15 2002 462 469
33. S. Saha, A. Bardelli, P. Buckhaults, V.E. Velculescu, C. Rago, B. St Croix, K.E. Romans, M.A. Choti, C. Lengauer, K.W. Kinzler, and B. Vogelstein A phosphatase associated with metastasis of colorectal cancer Science 294 2001 1343 1346
34. K. Forrester, C. Almoguera, K. Han, W.E. Grizzle, and M. Perucho Detection of high incidence of K-ras oncogenes during human colon tumorigenesis Nature 327 1987 298 303
35. J. Bartkova, M. Thullberg, P. Slezak, E. Jaramillo, C. Rubio, L.H. Thomassen, and J. Bartek Aberrant expression of G1-phase cell cycle regulators in flat and exophytic adenomas of the human colon Gastroenterology 120 2001 1680 1688
36. B. Vogelstein, E.R. Fearon, S.E. Kern, S.R. Hamilton, A.C. Preisinger, Y. Nakamura, and R. White Allelotype of colorectal carcinomas Science 244 1989 207 211
37. I.B. Georgiades, L.J. Curtis, R.M. Morris, C.C. Bird, and A.H. Wyllie Heterogeneity studies identify a subset of sporadic colorectal cancers without evidence for chromosomal or microsatellite instability Oncogene 18 1999 7933 7940
38. J.R. Eshleman, G. Casey, M.E. Kochera, W.D. Sedwick, S.E. Swinler, M.L. Veigl, J.K. Willson, S. Schwartz, and S.D. Markowitz Chromosome number and structure both are markedly stable in RER colorectal cancers and are not destabilized by mutation of p53 Oncogene 17 1998 719 725
39. O.P. Clausen, R.A. Lothe, A.L. Borresen-Dale, P. De Angelis, Y. Chen, T.O. Rognum, and G.I. Meling Association of p53 accumulation with TP53 mutations, loss of heterozygosity at 17p13, and DNA ploidy status in 273 colorectal carcinomas Diagn Mol Pathol 7 1998 215 223
40. S.E. Kern, E.R. Fearon, K.W. Tersmette, J.P. Enterline, M. Leppert, Y. Nakamura, R. White, B. Vogelstein, and S.R. Hamilton Clinical and pathological associations with allelic loss in colorectal carcinoma JAMA 261 1989 3099 3103
41. C.B. Diep, L. Thorstensen, G.I. Meling, E. Skovlund, T.O. Rognum, and R.A. Lothe Genetic tumor markers with prognostic impact in Dukes′ stages B and C colorectal cancer patients J Clin Oncol 21 2003 820 829
42. C.B. Diep, L.A. Parada, M.R. Teixeira, M. Eknaes, J.M. Nesland, B. Johansson, and R.A. Lothe Genetic profiling of colorectal cancer liver metastases by combined comparative genomic hybridization and G-banding analysis Genes Chromosomes Cancer 36 2003 189 197
43. G. Bardi, T. Sukhikh, N. Pandis, C. Fenger, O. Kronborg, and S. Heim Karyotypic characterization of colorectal adenocarcinomas Genes Chromosomes Cancer 12 1995 97 109
44. S. Malkhosyan, J. Yasuda, J.L. Soto, T. Sekiya, J. Yokota, and M. Perucho Molecular karyotype (amplotype) of metastatic colorectal cancer by unbiased arbitrarily primed PCR DNA fingerprinting Proc Natl Acad Sci USA 95 1998 10170 10175
45. N. Shivapurkar, A. Maitra, S. Milchgrub, and A.F. Gazdar Deletions of chromosome 4 occur early during the pathogenesis of colorectal carcinoma Hum Pathol 32 2001 169 177
46. R. Arribas, M. Ribas, R.A. Risques, L. Masramon, S. Tortola, E. Marcuello, G. Aiza, R. Miro, G. Capella, and M.A. Peinado Prospective assessment of allelic losses at 4p14-16 in colorectal cancer: two mutational patterns and a locus associated with poorer survival Clin Cancer Res 5 1999 3454 3459
47. P.H. Rooney, A. Boonsong, J.A. McKay, S. Marsh, D.A. Stevenson, G.I. Murray, S. Curran, N.E. Haites, J. Cassidy, and H.L. McLeod Colorectal cancer genomics: evidence for multiple genotypes which influence survival Br J Cancer 85 2001 1492 1498
48. S. Wessendorf, B. Fritz, G. Wrobel, M. Nessling, S. Lampel, D. Goettel, M. Kuepper, S. Joos, T. Hopman, F. Kokocinski, H. Dohner, M. Bentz, C. Schwaenen, and P. Lichter Automated screening for genomic imbalances using matrix-based comparative genomic hybridization Lab Invest 82 2002 47 60
49. D.L. Dexter, J.A. Barbosa, and P. Calabresi N,N-dimethylformamide-induced alteration of cell culture characteristics and loss of tumorigenicity in cultured human colon carcinoma cells Cancer Res 39 1979 1020 1025
50. M.G. Brattain, W.D. Fine, F.M. Khaled, J. Thompson, and D.E. Brattain Heterogeneity of malignant cells from a human colonic carcinoma Cancer Res 41 1981 1751 1756
51. S. von Kleist, E. Chany, P. Burtin, M. King, and J. Fogh Immunohistology of the antigenic pattern of a continuous cell line from a human colon tumor J Natl Cancer Inst 55 1975 555 560
52. B. Drewinko, M.M. Romsdahl, L.Y. Yang, M.J. Ahearn, and J.M. Trujillo Establishment of a human carcinoembryonic antigen-producing colon adenocarcinoma cell line Cancer Res 36 1976 467 475
53. A. Leibovitz, J.C. Stinson, W.B. McCombs III, C.E. McCoy, K.C. Mazur, and N.D. Mabry Classification of human colorectal adenocarcinoma cell lines Cancer Res 36 1976 4562 4569
54. K. Kawai, C. Viars, K. Arden, D. Tarin, V. Urquidi, and S. Goodison Comprehensive karyotyping of the HT-29 colon adenocarcinoma cell line Genes Chromosomes Cancer 34 2002 1 8
55. A.T. Culliford, A.D. Brooks, S. Sharma, L.B. Saltz, G.K. Schwartz, E.M. O'Reilly, D.H. Ilson, N.E. Kemeny, D.P. Kelsen, J.G. Guillem, W.D. Wong, A.M. Cohen, and P.B. Paty Surgical debulking and intraperitoneal chemotherapy for established peritoneal metastases from colon and appendix cancer Ann Surg Oncol 8 2001 787 795
56. B. Sadeghi, C. Arvieux, O. Glehen, A.C. Beaujard, M. Rivoire, J. Baulieux, E. Fontaumard, A. Brachet, J.L. Caillot, J.L. Faure, J. Porcheron, J.L. Peix, Y. Francois, J. Vignal, and F.N. Gilly Peritoneal carcinomatosis from non-gynecologic malignancies: results of the EVOCAPE 1 multicentric prospective study Cancer 88 2000 358 363
57. D.J. Demetrick, H. Zhang, and D.H. Beach Chromosomal mapping of the genes for the human CDK2/cyclin A-associated proteins p19 (SKP1A and SKP1B) and p45 (SKP2) Cytogenet Cell Genet 73 1996 104 107
58. SKY and CGH database. Available at: http://www.ncbi.nlm.nih.gov/sky/ skyweb.cgi, Accessed January 2004.
59. T.R. Chen, and W.C. Nierman Chromosome painting and quantitative karyotyping of colon adenocarcinoma cell lines, DLD-1 and HCT-15 Anticancer Res 14 1994 109 112
60. T.R. Chen, C.S. Dorotinsky, L.J. McGuire, M.L. Macy, and R.J. Hay DLD-1 and HCT-15 cell lines derived separately from colorectal carcinomas have totally different chromosome changes but the same genetic origin Cancer Genet Cytogenet 81 1995 103 108
61. N.Y. Yaseen, A.E. Watmore, A.M. Potter, C.W. Potter, G. Jacob, and R.C. Rees Chromosome studies in eleven colorectal tumors Cancer Genet Cytogenet 44 1990 83 97
62. V. Bertrand, M.H. Couturier-Turpin, A. Louvel, Y. Panis, and D. Couturier Relation between cytogenetic characteristics of two human colonic adenocarcinoma cell lines and their ability to grow locally or metastasize or both: an experimental study in the nude mouse Cancer Genet Cytogenet 113 1999 36 44
63. M.L. Slovak, G.A. Hoeltge, and J.M. Trent Cytogenetic alterations associated with the acquisition of doxorubicin resistance: possible significance of chromosome 7 alterations Cancer Res 47 1987 6646 6652
64. P. Soulie, M.F. Poupon, Y. Remvikos, B. Dutrillaux, and M. Muleris Distinct chromosomal alterations associated with TP53 status of LoVo cells under PALA selective pressure: a parallel with cytogenetic pathways of colorectal cancers Oncogene 18 1999 775 781
65. N. Tomita, W. Jiang, H. Hibshoosh, D. Warburton, S.M. Kahn, and I.B. Weinstein Isolation and characterization of a highly malignant variant of the SW480 human colon cancer cell line Cancer Res 52 1992 6840 6847
66. S. Gagos, D. Iliopoulos, S. Tseleni-Balafouta, M. Agapitos, C. Antachopoulos, A. Kostakis, P. Karayannakos, and G. Skalkeas Cell senescence and a mechanism of clonal evolution leading to continuous cell proliferation, loss of heterozygosity, and tumor heterogeneity: studies on two immortal colon cancer cell lines Cancer Genet Cytogenet 90 1996 157 165