메뉴 건너뛰기




Volumn 6, Issue 4, 2006, Pages 535-550

Microarray RNA transcriptional profiling: Part I. Platforms, experimental design and standardization

Author keywords

Dye bias; Fluorescence; Hybridization; Imaging; mRNA; Normalization; Pooling; Scanning; Standardization

Indexed keywords

STREPTAVIDIN;

EID: 33746846140     PISSN: 14737159     EISSN: 17448352     Source Type: Journal    
DOI: 10.1586/14737159.6.4.535     Document Type: Review
Times cited : (23)

References (78)
  • 1
    • 0036900267 scopus 로고    scopus 로고
    • Options available - From start to finish - From obtaining data from DNA microarrays II
    • Holloway AJ, van Laer RK, Tothill RW, Botwell DLL. Options available - from start to finish - from obtaining data from DNA microarrays II. Nat. Genet. 32, 481-489 (2002).
    • (2002) Nat. Genet. , vol.32 , pp. 481-489
    • Holloway, A.J.1    Van Laer, R.K.2    Tothill, R.W.3    Botwell, D.L.L.4
  • 2
    • 84988045317 scopus 로고    scopus 로고
    • Microarrays go mainstream
    • Gershon D. Microarrays go mainstream. Nat. Methods 1, 263-269 (2004).
    • (2004) Nat. Methods , vol.1 , pp. 263-269
    • Gershon, D.1
  • 3
    • 1542377310 scopus 로고    scopus 로고
    • Application of DNA microarray to toxicological research
    • Shioda T. Application of DNA microarray to toxicological research. J. Env. Pathol. Toxicol. Oncol. 23, 13-31 (2004).
    • (2004) J. Env. Pathol. Toxicol. Oncol. , vol.23 , pp. 13-31
    • Shioda, T.1
  • 4
    • 19944418773 scopus 로고    scopus 로고
    • Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA
    • Barrett MT, Scheffer A, Ben-Dor A et al. Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA. Proc. Natl Acad. Sci. USA 101, 17765-17770 (2004).
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 17765-17770
    • Barrett, M.T.1    Scheffer, A.2    Ben-Dor, A.3
  • 5
    • 10644247621 scopus 로고    scopus 로고
    • Application of DNA tilling arrays for whole-genome analysis
    • Mockler TC, Ecker JR. Application of DNA tilling arrays for whole-genome analysis. Genomics 85, 1-15 (2005).
    • (2005) Genomics , vol.85 , pp. 1-15
    • Mockler, T.C.1    Ecker, J.R.2
  • 6
    • 33746811175 scopus 로고    scopus 로고
    • Charting the microarray revolution
    • Shena M. Charting the microarray revolution. The Scientist 31, 29-31 (2004).
    • (2004) The Scientist , vol.31 , pp. 29-31
    • Shena, M.1
  • 7
    • 0242317346 scopus 로고    scopus 로고
    • Fundamentals of cDNA microarray data analysis
    • Leung YF, Cavalieri D. Fundamentals of cDNA microarray data analysis. Trends Genet. 19, 649-659 (2003).
    • (2003) Trends Genet. , vol.19 , pp. 649-659
    • Leung, Y.F.1    Cavalieri, D.2
  • 8
    • 0033031437 scopus 로고    scopus 로고
    • DNA arrays for analysis of gene expression
    • Eisen MB, Brown PO. DNA arrays for analysis of gene expression. Methods Enzymol. 303, 179-205 (1999).
    • (1999) Methods Enzymol. , vol.303 , pp. 179-205
    • Eisen, M.B.1    Brown, P.O.2
  • 9
    • 33646006688 scopus 로고    scopus 로고
    • Taming the genome with microarrays
    • Lipp E. Taming the genome with microarrays. Genetic Eng. News 26, 47-51 (2006).
    • (2006) Genetic Eng. News , vol.26 , pp. 47-51
    • Lipp, E.1
  • 11
    • 17044383714 scopus 로고    scopus 로고
    • Substrate architecture and functionality, defining the properties and performance of DNA, peptide, protein and carbohydrate microarrays
    • Sobek J, Schlapbach R. Substrate architecture and functionality, defining the properties and performance of DNA, peptide, protein and carbohydrate microarrays. Pharmagenomics 4(Suppl.), 32-44 (2004).
    • (2004) Pharmagenomics , vol.4 , Issue.SUPPL. , pp. 32-44
    • Sobek, J.1    Schlapbach, R.2
  • 12
  • 13
    • 27244435972 scopus 로고    scopus 로고
    • In situ oligonucleotide synthesis on poly (dimethylsiloxane): A flexible substrate for microarray fabrication
    • Moorcroft MJ, Meuleman WRA, Latham SG et al. In situ oligonucleotide synthesis on poly (dimethylsiloxane): a flexible substrate for microarray fabrication. Nucleic Acids Res. 33(8), e75 (2005).
    • (2005) Nucleic Acids Res. , vol.33 , Issue.8
    • Moorcroft, M.J.1    Meuleman, W.R.A.2    Latham, S.G.3
  • 14
    • 0031800106 scopus 로고    scopus 로고
    • Microarrays: Biotechnology's discovery platform for functional genomics
    • Schena M, Hellen RA, Theriault TP et al. Microarrays: biotechnology's discovery platform for functional genomics. Trends Biotech. 16, 301-306 (1998).
    • (1998) Trends Biotech. , vol.16 , pp. 301-306
    • Schena, M.1    Hellen, R.A.2    Theriault, T.P.3
  • 15
    • 0035072249 scopus 로고    scopus 로고
    • Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
    • Hughes TR, Mao M, Jones AR et al. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol. 19, 342-347 (2001).
    • (2001) Nat. Biotechnol. , vol.19 , pp. 342-347
    • Hughes, T.R.1    Mao, M.2    Jones, A.R.3
  • 16
    • 3543068702 scopus 로고    scopus 로고
    • Microarray platforms - Comparisons and contrasts
    • Hardiman G. Microarray platforms - comparisons and contrasts. Pharmacogenomics 5, 487-502, (2004). • Overview of various microarray platforms.
    • (2004) Pharmacogenomics , vol.5 , pp. 487-502
    • Hardiman, G.1
  • 17
    • 0032846163 scopus 로고    scopus 로고
    • Maskless fabrication of light-directed oligonucleotide microarray using digital micromirror array
    • Singh-Gasson S, Green RD, Yue Y et al. Maskless fabrication of light-directed oligonucleotide microarray using digital micromirror array. Nat. Biotechnol. 17, 974-978 (1999).
    • (1999) Nat. Biotechnol. , vol.17 , pp. 974-978
    • Singh-Gasson, S.1    Green, R.D.2    Yue, Y.3
  • 18
    • 84883837006 scopus 로고    scopus 로고
    • Validation of a novel, fully integrated and flexible microarray benchtop facility for gene expression profiling
    • Baum M, Bielau S, Rittner N et al. Validation of a novel, fully integrated and flexible microarray benchtop facility for gene expression profiling. Nucleic Acids Res. 31, e151 (2003).
    • (2003) Nucleic Acids Res. , vol.31
    • Baum, M.1    Bielau, S.2    Rittner, N.3
  • 19
    • 0035072249 scopus 로고    scopus 로고
    • Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
    • Hughes TR, Mao M, Jones AR et al. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol. 19, 42-347 (2001).
    • (2001) Nat. Biotechnol. , vol.19 , pp. 42-347
    • Hughes, T.R.1    Mao, M.2    Jones, A.R.3
  • 20
    • 0036545952 scopus 로고    scopus 로고
    • An assessment of Motorola CodeLink™ microarray performance for gene expression profiling applications
    • Ramakrishnan R, Dorris D, Lublinsky A et al. An assessment of Motorola CodeLink™ microarray performance for gene expression profiling applications. Nucleic Acids Res. 30, e30 (2002).
    • (2002) Nucleic Acids Res. , vol.30
    • Ramakrishnan, R.1    Dorris, D.2    Lublinsky, A.3
  • 22
    • 7244245443 scopus 로고    scopus 로고
    • Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays
    • Bibikova M, Talantov D, Chudin E et al. Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays. Am. J. Pathol. 165, 1799-1807 (2004).
    • (2004) Am. J. Pathol. , vol.165 , pp. 1799-1807
    • Bibikova, M.1    Talantov, D.2    Chudin, E.3
  • 23
    • 33746808364 scopus 로고    scopus 로고
    • Reproducible multiplexed microarray approach
    • Conzone SD, Redkar RJ. Reproducible multiplexed microarray approach. Genet. Engineer. News 24, 26 (2004).
    • (2004) Genet. Engineer. News , vol.24 , pp. 26
    • Conzone, S.D.1    Redkar, R.J.2
  • 24
    • 0036789519 scopus 로고    scopus 로고
    • Variation in gene expression within and among natural populations
    • Oleksiak MF, Churchill GA, Crawford DL. Variation in gene expression within and among natural populations. Nat. Genet. 32, 261-266 (2002).
    • (2002) Nat. Genet. , vol.32 , pp. 261-266
    • Oleksiak, M.F.1    Churchill, G.A.2    Crawford, D.L.3
  • 25
    • 0242318322 scopus 로고    scopus 로고
    • Mixed-model reanalysis of primate data suggests tissue and species bias in oligonucleotide-based gene expression profile
    • Hsieh WP, Chu TM, Wolfinger RD, Gibson G. Mixed-model reanalysis of primate data suggests tissue and species bias in oligonucleotide-based gene expression profile. Genetics 165, 747-757 (2003).
    • (2003) Genetics , vol.165 , pp. 747-757
    • Hsieh, W.P.1    Chu, T.M.2    Wolfinger, R.D.3    Gibson, G.4
  • 26
    • 14844364789 scopus 로고    scopus 로고
    • Post-analysis follow-up and validations of microarray experiment
    • Chuaqui RF, Bonner RF, Best CJM et al. Post-analysis follow-up and validations of microarray experiment. Nat. Genet. 32, S509-S514 (2002).
    • (2002) Nat. Genet. , vol.32
    • Chuaqui, R.F.1    Bonner, R.F.2    Best, C.J.M.3
  • 27
    • 0038486795 scopus 로고    scopus 로고
    • Spotted long oligonucleotide array for human gene expression analysis
    • Barczak A, Rodriguez MW, Hanspers K et al. Spotted long oligonucleotide array for human gene expression analysis. Genome Res. 13, 1775-1785 (2003).
    • (2003) Genome Res. , vol.13 , pp. 1775-1785
    • Barczak, A.1    Rodriguez, M.W.2    Hanspers, K.3
  • 28
    • 3242707576 scopus 로고    scopus 로고
    • Evaluation of a linear application method for small samples used on high-density oligonucleotide microarray analysis
    • Dumur CI, Garrett CT, Archer KJ et al. Evaluation of a linear application method for small samples used on high-density oligonucleotide microarray analysis. Anal. Biochem. 331, 314-321 (2004).
    • (2004) Anal. Biochem. , vol.331 , pp. 314-321
    • Dumur, C.I.1    Garrett, C.T.2    Archer, K.J.3
  • 29
    • 19844379463 scopus 로고    scopus 로고
    • Challenges and opportunities for pathogen detection using DNA microarrays
    • Call DR. Challenges and opportunities for pathogen detection using DNA microarrays. Crit. Rev. Microbiol. 31, 91-99 (2005).
    • (2005) Crit. Rev. Microbiol. , vol.31 , pp. 91-99
    • Call, D.R.1
  • 30
    • 0141905890 scopus 로고    scopus 로고
    • Evaluation of gene expression measurements for four commercial microarray platforms
    • Tan PK, Downey TJ, Spitznagel EI Jr et al. Evaluation of gene expression measurements for four commercial microarray platforms. Nucleic Acids Res. 31, 5676-5684 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5676-5684
    • Tan, P.K.1    Downey, T.J.2    Spitznagel Jr., E.I.3
  • 31
    • 27144486151 scopus 로고    scopus 로고
    • Experimental comparison and cross validation of the Affymetrix and Illumina gene expression analysis platforms
    • Barnes M, Freudenberg J, Thompson S, Aronow B, Pavlidis P. Experimental comparison and cross validation of the Affymetrix and Illumina gene expression analysis platforms. Nucleic Acids Res. 33(18), 5914-5923 (2005).
    • (2005) Nucleic Acids Res. , vol.33 , Issue.18 , pp. 5914-5923
    • Barnes, M.1    Freudenberg, J.2    Thompson, S.3    Aronow, B.4    Pavlidis, P.5
  • 32
    • 27844594381 scopus 로고    scopus 로고
    • Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes
    • Warnat P, Eils R, Brors B. Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes. BMC Bioinformatics 6, 265 (2005).
    • (2005) BMC Bioinformatics , vol.6 , pp. 265
    • Warnat, P.1    Eils, R.2    Brors, B.3
  • 33
    • 23744510853 scopus 로고    scopus 로고
    • Meta-analysis of microarray data on pancreatic cancer defines a set of commonly dysregulated genes
    • Grützmann R, Boriss H, Ammerpohl O et al. Meta-analysis of microarray data on pancreatic cancer defines a set of commonly dysregulated genes. Oncogene 24, 5079-5088 (2005).
    • (2005) Oncogene , vol.24 , pp. 5079-5088
    • Grützmann, R.1    Boriss, H.2    Ammerpohl, O.3
  • 34
    • 32644454121 scopus 로고    scopus 로고
    • Improving gene expression analysis. Methods are progressing to improve microarray quality control
    • Flanagan N. Improving gene expression analysis. Methods are progressing to improve microarray quality control. Genet. Eng. News 26, 1, 42, 44-46 (2006).
    • (2006) Genet. Eng. News , vol.26 , pp. 1
    • Flanagan, N.1
  • 35
    • 27144548491 scopus 로고    scopus 로고
    • The External RNA Controls Consortium: A progress report
    • Warrington JA. The External RNA Controls Consortium: a progress report. Nat. Methods 2, 731-734 (2005).
    • (2005) Nat. Methods , vol.2 , pp. 731-734
    • Warrington, J.A.1
  • 36
    • 18344396568 scopus 로고    scopus 로고
    • Minimum information about a microarray experiment (MIAME) - Toward standards for microarray data
    • Brazma A, Hingamp P, Quackenbush J et al. Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nat. Genet. 29, 365-371 (2001). • Outline of standardization strategies for microarrays.
    • (2001) Nat. Genet. , vol.29 , pp. 365-371
    • Brazma, A.1    Hingamp, P.2    Quackenbush, J.3
  • 37
    • 9144227576 scopus 로고    scopus 로고
    • An open letter on microarray data from the MGED Society
    • Bolly C, Brazma A. An open letter on microarray data from the MGED Society. Microbiology 150, 3522-3524 (2004).
    • (2004) Microbiology , vol.150 , pp. 3522-3524
    • Bolly, C.1    Brazma, A.2
  • 38
    • 1542290446 scopus 로고    scopus 로고
    • Expression profiling - Best practices of data generation and interpretation in clinical trials
    • Hoffman EP. Expression profiling - best practices of data generation and interpretation in clinical trials. Nat. Genet. 5, 229-237 (2004).
    • (2004) Nat. Genet. , vol.5 , pp. 229-237
    • Hoffman, E.P.1
  • 39
    • 18244389201 scopus 로고    scopus 로고
    • Standardizing global gene expression analysis between laboratories and across platforms
    • Bammler T, Beyer RP, Bhattacharya S et al. Standardizing global gene expression analysis between laboratories and across platforms. Nat. Methods 2, 351-356 (2005). • Standardization of gene expression among microarray laboratories.
    • (2005) Nat. Methods , vol.2 , pp. 351-356
    • Bammler, T.1    Beyer, R.P.2    Bhattacharya, S.3
  • 40
    • 18244384210 scopus 로고    scopus 로고
    • Multiple-laboratory comparison of microarray platforms
    • Irizarry R, Warren D, Spenser F et al. Multiple-laboratory comparison of microarray platforms. Nat. Methods 2, 345-350 (2005). • Comparison of microarray platforms among different laboratories.
    • (2005) Nat. Methods , vol.2 , pp. 345-350
    • Irizarry, R.1    Warren, D.2    Spenser, F.3
  • 42
    • 33645990933 scopus 로고    scopus 로고
    • In search of microarray standards
    • Perkel JM. In search of microarray standards. The Scientist 20, 73 (2006). • Reproducibility of gene expression among laboratories.
    • (2006) The Scientist , vol.20 , pp. 73
    • Perkel, J.M.1
  • 43
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cDNA microarrays
    • Churchill GA. Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 32, 490-495 (2002). •• Overview of experimental design for microarray data.
    • (2002) Nat. Genet. , vol.32 , pp. 490-495
    • Churchill, G.A.1
  • 44
    • 0346733313 scopus 로고    scopus 로고
    • Design consideration for efficient and effective microarray studies
    • Kerr MK. Design consideration for efficient and effective microarray studies. Biometrics 59, 822-828 (2003). • Design considerations for microarray studies.
    • (2003) Biometrics , vol.59 , pp. 822-828
    • Kerr, M.K.1
  • 45
    • 0034730124 scopus 로고    scopus 로고
    • Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridization
    • Lee MLT, Kuo FC, Whitmore GA, Sklar J. Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridization. Proc. Natl Acad. Sci. USA 97, 9834-9839 (2000). • Requirement for replication in microarray expression studies.
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 9834-9839
    • Lee, M.L.T.1    Kuo, F.C.2    Whitmore, G.A.3    Sklar, J.4
  • 46
    • 0141626917 scopus 로고    scopus 로고
    • The effect of replication on gene expression microarray experiments
    • Pavlidis P, Li Q, Noble WS. The effect of replication on gene expression microarray experiments. Bioinformatics 19, 1620-1627 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 1620-1627
    • Pavlidis, P.1    Li, Q.2    Noble, W.S.3
  • 47
    • 0000884487 scopus 로고    scopus 로고
    • Experimental design for gene expression microarrays
    • Kerr MK, Churchill GA. Experimental design for gene expression microarrays. Biostatistics 2, 183-201 (2001).
    • (2001) Biostatistics , vol.2 , pp. 183-201
    • Kerr, M.K.1    Churchill, G.A.2
  • 48
    • 0036319960 scopus 로고    scopus 로고
    • Design issues for cDNA microarray experiments
    • Yang YH, Speed T. Design issues for cDNA microarray experiments. Nat. Reviews 3, 579-588 (2002). • Design principles in microarray experiments.
    • (2002) Nat. Reviews , vol.3 , pp. 579-588
    • Yang, Y.H.1    Speed, T.2
  • 49
    • 0037177625 scopus 로고    scopus 로고
    • Genetic dissection of transcriptional regulation in budding yeast
    • Brem RB, Yvert G, Clinton R, Kruglyak L. Genetic dissection of transcriptional regulation in budding yeast. Science 296, 752-755 (2002).
    • (2002) Science , vol.296 , pp. 752-755
    • Brem, R.B.1    Yvert, G.2    Clinton, R.3    Kruglyak, L.4
  • 50
    • 19544369698 scopus 로고    scopus 로고
    • Characterizing dye bias in microarray experiments
    • Dobbin KK, Kawasaki ES, Petersen DW, Simon RM. Characterizing dye bias in microarray experiments. Bioinformatics 21, 2430-2437 (2005). • Confounding due to dye bias in microarrays.
    • (2005) Bioinformatics , vol.21 , pp. 2430-2437
    • Dobbin, K.K.1    Kawasaki, E.S.2    Petersen, D.W.3    Simon, R.M.4
  • 52
    • 4444277447 scopus 로고    scopus 로고
    • Factorial and time-course designs for cDNA microarray experiments
    • Glonek GFV, Solomon PJ. Factorial and time-course designs for cDNA microarray experiments. Biostatistics 5, 89-111 (2004).
    • (2004) Biostatistics , vol.5 , pp. 89-111
    • Glonek, G.F.V.1    Solomon, P.J.2
  • 55
    • 1542271926 scopus 로고    scopus 로고
    • Dye-bias correction in dual-labeled cDNA microarray gene expression measurements
    • Rosenzweig BA, Pine PS, Domon OE et al. Dye-bias correction in dual-labeled cDNA microarray gene expression measurements. Env. Health. Perspect. 112, 480-487 (2004).
    • (2004) Env. Health. Perspect. , vol.112 , pp. 480-487
    • Rosenzweig, B.A.1    Pine, P.S.2    Domon, O.E.3
  • 56
    • 0036855402 scopus 로고    scopus 로고
    • Comparison of microarray designs for class comparison and class discovery
    • Dobbin K, Simon R. Comparison of microarray designs for class comparison and class discovery. Bioinformatics 18, 1438-1445 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 1438-1445
    • Dobbin, K.1    Simon, R.2
  • 57
    • 0141506137 scopus 로고    scopus 로고
    • Questions and answers on design of dual-label microarrays for identifying differentially expressed genes
    • Dobbin K, Shih JH, Simon R. Questions and answers on design of dual-label microarrays for identifying differentially expressed genes. J. Natl Cancer Inst. 95, 1362-1369 (2003).
    • (2003) J. Natl Cancer Inst. , vol.95 , pp. 1362-1369
    • Dobbin, K.1    Shih, J.H.2    Simon, R.3
  • 58
    • 0037620681 scopus 로고    scopus 로고
    • Statistical design of reverse dye microarrays
    • Dobbin K, Shih JH, Simon R. Statistical design of reverse dye microarrays. Bioinformatics 19, 803-810 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 803-810
    • Dobbin, K.1    Shih, J.H.2    Simon, R.3
  • 59
    • 2542465847 scopus 로고    scopus 로고
    • Triple-target microarray experiments: A novel experimental strategy
    • Foster T, Sosta Y, Roy D, Cooke HJ, Maratou K. Triple-target microarray experiments: a novel experimental strategy. BMC Genomics 5, 13 (2004).
    • (2004) BMC Genomics , vol.5 , pp. 13
    • Foster, T.1    Sosta, Y.2    Roy, D.3    Cooke, H.J.4    Maratou, K.5
  • 60
    • 9444266425 scopus 로고    scopus 로고
    • Sample size for detecting differentially expressed genes in microarray experiments
    • Wei C, Li J, Bumgarner RE. Sample size for detecting differentially expressed genes in microarray experiments. BMC Genomics 5, 87 (2004).
    • (2004) BMC Genomics , vol.5 , pp. 87
    • Wei, C.1    Li, J.2    Bumgarner, R.E.3
  • 61
    • 0036738906 scopus 로고    scopus 로고
    • Determination of minimum sample size and discriminator expression platform in microarray data
    • Hwang D, Schmitt WA, Stephanopoulos G, Stephanopoulos G. Determination of minimum sample size and discriminator expression platform in microarray data. Bioinformatics 18, 1184-1193 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 1184-1193
    • Hwang, D.1    Schmitt, W.A.2    Stephanopoulos, G.3    Stephanopoulos, G.4
  • 62
    • 19544383638 scopus 로고    scopus 로고
    • Sample size determination in microarray experiments for class comparison and prognostic classification
    • Dobbin K, Simon R. Sample size determination in microarray experiments for class comparison and prognostic classification. Biostatistics 6, 27-38 (2005). • Formulae for sample size estimation in microarray studies.
    • (2005) Biostatistics , vol.6 , pp. 27-38
    • Dobbin, K.1    Simon, R.2
  • 63
    • 21644451292 scopus 로고    scopus 로고
    • Sample size calculation for multiple testing in microarray data analysis
    • Jung SH, Bang H, Young S. Sample size calculation for multiple testing in microarray data analysis. Biostatistics 6, 157-159 (2005).
    • (2005) Biostatistics , vol.6 , pp. 157-159
    • Jung, S.H.1    Bang, H.2    Young, S.3
  • 64
    • 15444364657 scopus 로고    scopus 로고
    • On the utility of pooling biological samples in microarray experiment
    • Kendziorski C, Irizarry RA, Chen KS, Haag JD, Gold MN. On the utility of pooling biological samples in microarray experiment. Proc. Natl Acad. Sci USA 102, 4252-4257 (2005). • Effect of sample pooling in microarray studies.
    • (2005) Proc. Natl Acad. Sci USA , vol.102 , pp. 4252-4257
    • Kendziorski, C.1    Irizarry, R.A.2    Chen, K.S.3    Haag, J.D.4    Gold, M.N.5
  • 65
    • 0141939435 scopus 로고    scopus 로고
    • The efficiency of pooling mRNA in microarray experiments
    • Kendziorski CM, Zhang Y, Lan H, Attie AD. The efficiency of pooling mRNA in microarray experiments. Biostatistics 4, 465-477 (2003).
    • (2003) Biostatistics , vol.4 , pp. 465-477
    • Kendziorski, C.M.1    Zhang, Y.2    Lan, H.3    Attie, A.D.4
  • 66
    • 0347621463 scopus 로고    scopus 로고
    • Implications of pooling RNA samples for microarray experiments
    • Peng X, Wood CL, Blalock EM et al. Implications of pooling RNA samples for microarray experiments. BMC Bioinformatics 4, 26 (2003).
    • (2003) BMC Bioinformatics , vol.4 , pp. 26
    • Peng, X.1    Wood, C.L.2    Blalock, E.M.3
  • 67
    • 12344333513 scopus 로고    scopus 로고
    • Effect of pooling mRNA in microarray class comparison
    • Shih JH, Michalowska AM, Dobbin K et al. Effect of pooling mRNA in microarray class comparison. Bioinformatics 18, 2218-3325 (2004).
    • (2004) Bioinformatics , vol.18 , pp. 2218-3325
    • Shih, J.H.1    Michalowska, A.M.2    Dobbin, K.3
  • 68
    • 25144478254 scopus 로고    scopus 로고
    • Pooling samples within microarray studies: A comparative analysis of rat liver transcription response to prototypical toxicants
    • Jolly RA, Goldstein KM, Wei T et al. Pooling samples within microarray studies: a comparative analysis of rat liver transcription response to prototypical toxicants. Physiol. Genomics 22, 346-355 (2005).
    • (2005) Physiol. Genomics , vol.22 , pp. 346-355
    • Jolly, R.A.1    Goldstein, K.M.2    Wei, T.3
  • 69
    • 28944441103 scopus 로고    scopus 로고
    • Effect of pooling samples on the efficiency of comparative studies using microarrays
    • Zhang SD, Grant TW. Effect of pooling samples on the efficiency of comparative studies using microarrays. Bioinformatics 21, 4378-4383 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 4378-4383
    • Zhang, S.D.1    Grant, T.W.2
  • 70
    • 0041336612 scopus 로고    scopus 로고
    • Effect of atmospheric ozone on microarray data quality
    • Fare TL, Coffey EM, Dai H et al. Effect of atmospheric ozone on microarray data quality. Anal. Chem. 75, 4672-5675 (2003).
    • (2003) Anal. Chem. , vol.75 , pp. 4672-5675
    • Fare, T.L.1    Coffey, E.M.2    Dai, H.3
  • 71
    • 2442571046 scopus 로고    scopus 로고
    • Microarray results improve significantly as hybridization approaches equilibrium
    • Sartor M, Schwanekamp J, Halbleib D, Mohamed I, Karyala S. Microarray results improve significantly as hybridization approaches equilibrium. Biotechniques 36, 790-796 (2004).
    • (2004) Biotechniques , vol.36 , pp. 790-796
    • Sartor, M.1    Schwanekamp, J.2    Halbleib, D.3    Mohamed, I.4    Karyala, S.5
  • 72
    • 12344336772 scopus 로고    scopus 로고
    • Progress in realizing the promise of microarrays in system neurobiology
    • Dougherty JD, Greschwind DH. Progress in realizing the promise of microarrays in system neurobiology. Neurons 45, 183-185 (2005).
    • (2005) Neurons , vol.45 , pp. 183-185
    • Dougherty, J.D.1    Greschwind, D.H.2
  • 74
    • 0036794673 scopus 로고    scopus 로고
    • Advantages of mRNA amplification for microarray analysis
    • Feldman AL, Costouros NG, Wang E et al. Advantages of mRNA amplification for microarray analysis. Biotechniques 33, 906-914 (2002).
    • (2002) Biotechniques , vol.33 , pp. 906-914
    • Feldman, A.L.1    Costouros, N.G.2    Wang, E.3
  • 75
    • 33746828379 scopus 로고    scopus 로고
    • Microarray RNA transcriptional profiling: Part II. Analytical considerations and annotation
    • In Press
    • Ahmed FE. Microarray RNA transcriptional profiling: Part II. Analytical considerations and annotation. Expert Rev. Mol. Diagn. 6(6), (2006) (In Press).
    • (2006) Expert Rev. Mol. Diagn. , vol.6 , Issue.6
    • Ahmed, F.E.1
  • 76
    • 33746830195 scopus 로고    scopus 로고
    • Phalanx Biotech Group, Inc. www.phalanxbiotech.com
  • 77
    • 33746859978 scopus 로고    scopus 로고
    • CombiMatrix Corp. www.combimatrix.com
  • 78
    • 33746842057 scopus 로고    scopus 로고
    • SuperArray Bioscience Corp. www.superarray.com


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.