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Volumn 19, Issue 7, 2003, Pages 803-810

Statistical design of reverse dye microarrays

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; DYE; RNA;

EID: 0037620681     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg076     Document Type: Article
Times cited : (93)

References (33)
  • 2
    • 0036083657 scopus 로고    scopus 로고
    • Global gene expression profiling of end-stage dilated cardiomyopathy using a human cardiovascular-based cDNA microarray
    • Barrans,J.D., Allen,P.D., Stamatiou,D., Dzau,VJ. and Liew,C. (2002) Global gene expression profiling of end-stage dilated cardiomyopathy using a human cardiovascular-based cDNA microarray. Am. J. Pathol., 160, 2035-2043.
    • (2002) Am. J. Pathol. , vol.160 , pp. 2035-2043
    • Barrans, J.D.1    Allen, P.D.2    Stamatiou, D.3    Dzau, V.J.4    Liew, C.5
  • 4
    • 0035184764 scopus 로고    scopus 로고
    • Identification and classification of differentially expressed genes in renal cell carcinoma by expression profiling on a global human 31,500-element cDNA array
    • Boer,J.M., Huber,W.K., Sültmann,H., Wilmer,F., von Heydebreck,A., Haas,S., Korn,B., Gunawan,B., Vente,A., Füzesi,L. et al. (2001) Identification and classification of differentially expressed genes in renal cell carcinoma by expression profiling on a global human 31,500-element cDNA array. Genome Res., 11, 1861-1870.
    • (2001) Genome Res. , vol.11 , pp. 1861-1870
    • Boer, J.M.1    Huber, W.K.2    Sültmann, H.3    Wilmer, F.4    von Heydebreck, A.5    Haas, S.6    Korn, B.7    Gunawan, B.8    Vente, A.9    Füzesi, L.10
  • 9
    • 0036855402 scopus 로고    scopus 로고
    • Comparison of microarray designs for class comparison and class discovery
    • Dobbin,K. and Simon,R. (2002) Comparison of microarray designs for class comparison and class discovery. Bioinformatics, 18, 1438-1445.
    • (2002) Bioinformatics , vol.18 , pp. 1438-1445
    • Dobbin, K.1    Simon, R.2
  • 12
    • 0034921979 scopus 로고    scopus 로고
    • Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data
    • Ideker,T., Thorsson,V., Siegel,A.F. and Hood,L.E. (2000) Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data. J. Comput. Biol., 7, 805-817.
    • (2000) J. Comput. Biol. , vol.7 , pp. 805-817
    • Ideker, T.1    Thorsson, V.2    Siegel, A.F.3    Hood, L.E.4
  • 14
    • 0035733752 scopus 로고    scopus 로고
    • The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
    • Jin,W., Riley,R.M., Wolfinger,R.D., White,K.P., Passador-Gurgel,G. and Gibson,G. (2001) The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nature Genet., 29, 389-395.
    • (2001) Nature Genet. , vol.29 , pp. 389-395
    • Jin, W.1    Riley, R.M.2    Wolfinger, R.D.3    White, K.P.4    Passador-Gurgel, G.5    Gibson, G.6
  • 15
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • Kerr,M.K., Martin,M. and Churchill,G.A. (2001) Analysis of variance for gene expression microarray data. J. Comput. Biol., 7, 819-837.
    • (2001) J. Comput. Biol. , vol.7 , pp. 819-837
    • Kerr, M.K.1    Martin, M.2    Churchill, G.A.3
  • 17
    • 0037166967 scopus 로고    scopus 로고
    • Expression profiling of Drosophila imaginal discs
    • research0038.1-0038.16
    • Klebes,A., Biehs,B., Cifuentes,F. and Kornberg,T.B. (2002) Expression profiling of Drosophila imaginal discs. Genome Biol., 3, research0038.1-0038.16.
    • (2002) Genome Biol. , vol.3
    • Klebes, A.1    Biehs, B.2    Cifuentes, F.3    Kornberg, T.B.4
  • 18
    • 0034730124 scopus 로고    scopus 로고
    • Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
    • Lee,M.T., Kuo,F.C., Whitmore,G.A. and Sklar,J. (2000) Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations. Proc. Natl Acad. Sci. USA, 97, 9834-9839.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 9834-9839
    • Lee, M.T.1    Kuo, F.C.2    Whitmore, G.A.3    Sklar, J.4
  • 19
    • 0037071875 scopus 로고    scopus 로고
    • Molecular diagnosis of colorectal tumors by expression profiles of 50 genes expressed differentially in adenomas and carcinomas
    • Lin,Y., Furukawa,Y., Tsunoda,T., Yue,C., Yang,K. and Nakamura,Y. (2002) Molecular diagnosis of colorectal tumors by expression profiles of 50 genes expressed differentially in adenomas and carcinomas. Oncogene, 21, 4120-4128.
    • (2002) Oncogene , vol.21 , pp. 4120-4128
    • Lin, Y.1    Furukawa, Y.2    Tsunoda, T.3    Yue, C.4    Yang, K.5    Nakamura, Y.6
  • 20
    • 0037172983 scopus 로고    scopus 로고
    • Transformation of follicular lymphoma to diffuse large-cell lymphoma: Alternative patterns with increased or decreased expression of c-myc and its regulated genes
    • Lossos,I.S., Alizadeh,A.A., Diehn,M., Warnke,R., Thorstenson,Y., Oefner,P.J., Brown,P.O., Botstein,D. and Levy,R. (2002) Transformation of follicular lymphoma to diffuse large-cell lymphoma: alternative patterns with increased or decreased expression of c-myc and its regulated genes. Proc. Natl Acad. Sci. USA, 99, 8886-8891.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 8886-8891
    • Lossos, I.S.1    Alizadeh, A.A.2    Diehn, M.3    Warnke, R.4    Thorstenson, Y.5    Oefner, P.J.6    Brown, P.O.7    Botstein, D.8    Levy, R.9
  • 22
    • 0035684378 scopus 로고    scopus 로고
    • A model for measurement error for gene expression arrays
    • Rocke,D.M. and Durbin,B. (2001) A model for measurement error for gene expression arrays. J. Comput. Biol., 8, 557-569.
    • (2001) J. Comput. Biol. , vol.8 , pp. 557-569
    • Rocke, D.M.1    Durbin, B.2
  • 23
    • 0038820530 scopus 로고
    • The choice of subsample size in two-stage sampling
    • Sadooghi-Alvandi,M. (1986) The choice of subsample size in two-stage sampling. J. Am. Stat. Assoc., 81, 555-558.
    • (1986) J. Am. Stat. Assoc. , vol.81 , pp. 555-558
    • Sadooghi-Alvandi, M.1
  • 25
    • 0034625797 scopus 로고    scopus 로고
    • A novel, sensitive detection system for high-density microarrays using dendrimer technology
    • Stears,R.L., Getts,R.C. and Gullans,S.R. (2000) A novel, sensitive detection system for high-density microarrays using dendrimer technology. Physiol Genomics, 3, 93-99.
    • (2000) Physiol. Genomics , vol.3 , pp. 93-99
    • Stears, R.L.1    Getts, R.C.2    Gullans, S.R.3
  • 26
    • 0035875553 scopus 로고    scopus 로고
    • Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
    • Tseng,G.C., Oh,M., Rohlin,L., Liao,J. and Wong,W.H. (2001) Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res., 29, 2549-2557.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2549-2557
    • Tseng, G.C.1    Oh, M.2    Rohlin, L.3    Liao, J.4    Wong, W.H.5
  • 27
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher,V.G., Tibshirani,R. and Chu,G. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl Acad. Sci. USA, 9, 5116-5121.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.9 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 28
    • 0035433128 scopus 로고    scopus 로고
    • Quantitative quality control in microarray image processing and data acquisition
    • Wang,X., Ghosh,S. and Guo,S. (2001) Quantitative quality control in microarray image processing and data acquisition. Nucleic Acids Res., 29, e75.
    • (2001) Nucleic Acids Res. , vol.29
    • Wang, X.1    Ghosh, S.2    Guo, S.3
  • 29
    • 0036977250 scopus 로고    scopus 로고
    • The microarray: Potential applications for ophthalmic research
    • Wilson,A.S., Hobbs,B.G., Speed,T.P. and Rakoczy,P.E. (2002) The microarray: potential applications for ophthalmic research. Mol. Vis., 8, 259-270.
    • (2002) Mol. Vis. , vol.8 , pp. 259-270
    • Wilson, A.S.1    Hobbs, B.G.2    Speed, T.P.3    Rakoczy, P.E.4
  • 31
    • 0003576793 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data
    • Technical Report, 589
    • Yang,Y.H., Dudoit,S., Luu,P. and Speed,T.P. (2001) Normalization for cDNA microarray data. Technical Report, 589. http://stat-www.berkeley.edu/tech-reports/index.html
    • (2001)
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Speed, T.P.4
  • 32
    • 0036976368 scopus 로고    scopus 로고
    • Evaluation and optimization of procedures for target labeling and hybridization of cDNA microarrays
    • Yu,J., Othman,M.I., Farjo,R., Zareparsi,S., MacNee,S.P., Yoshida,S. and Swaroop,A. (2002) Evaluation and optimization of procedures for target labeling and hybridization of cDNA microarrays. Mol. Vis., 8, 130-137.
    • (2002) Mol. Vis. , vol.8 , pp. 130-137
    • Yu, J.1    Othman, M.I.2    Farjo, R.3    Zareparsi, S.4    MacNee, S.P.5    Yoshida, S.6    Swaroop, A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.