Gene-specific dye bias in microarray reference designs

FEBS Letters

Volumn 560, Issue 1-3, 2004, Pages 120-124

  Dombkowski, Alan A ^a   Thibodeau, Bryan J ^a   Starcevic, Susan L ^a   Novak, Raymond F ^a  

^a WAYNE STATE UNIVERSITY   (United States)

Author keywords

Dye bias; Dye swap; Microarray; Reference design

Indexed keywords

FLUORESCENT DYE;

ARTICLE; DNA MICROARRAY; EXPERIMENT; GENE EXPRESSION; HUMAN; HUMAN CELL; LABELING INDEX; MATHEMATICAL ANALYSIS; PRIORITY JOURNAL; PRODUCTIVITY; RNA ISOLATION;

EID: 1342286802     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(04)00083-3     Document Type: Article

References (20)

1. Churchill G.A. Nat. Genet. 32:2002;490-495.
2. Yang Y., Speed T. Nat. Rev. Genet. 3:2002;579-588.
3. Bartosiewicz M., Trounstine M., Barker D., Johnston R., Buckpitt A. Arch. Biochem. Biophys. 376:2000;66-73.
4. Taniguchi M., Miura K., Iwao H., Yamanaka S. Genomics. 71:2001;34-39.
5. Kerr M.K., Churchill G.A. Biostatistics. 2:2001;183-201.
6. Tseng G.C., Oh M.K., Rohlin L., Liao J.C., Wong W.H. Nucleic Acids Res. 29:2001;2549-2557.
7. Simon R., Radmacher M.D., Dobbin K. Genet. Epidemiol. 23:2002;21-36.
8. Nadon R., Shoemaker J. Trends Genet. 18:2002;265-271.
9. Dudoit, Y., Yang, Y.H., Callow, M.J. and Speed, T.P. (2000) Technical Report 578, Department of Statistics, UC Berkeley, CA.
10. Yang Y.H., Dudoit Y., Luu P., Lin D.M., Peng V., Ngai J., Speed T.P. Nucleic Acids Res. 30:2002;e15.
11. Fang Y., Brass A., Hoyle D.C., Hayes A., Bashein A., Oliver S.G., Waddington D., Rattray M. Nucleic Acids Res. 31:2003;e96.
12. Benes V., Muckenthaler M. Trends Biochem. Sci. 28:2003;244-249.
13. Pritchard C.C., Hsu L., Delrow J., Nelson P.S. Proc. Natl. Acad. Sci. USA. 98:2001;13266-13271.
14. Brem R.B., Yvert G., Clinton R., Kruglyak L. Science. 296:2002;752-755.
15. Starcevic S.L., Elfrink C., Novak R.F. J. Natl. Cancer Inst. 93:2001;776-782.
16. Dawson P.J., Wolman S.R., Tait L., Heppner G.H., Miller F.R. Am. J. Pathol. 148:1996;313-319.
17. Kerr M.K., Martin M., Churchill G.A. J. Comput. Biol. 7:2000;819-837.
18. Draghici S., Kulaeva O., Hoff B., Petrov A., Shams S., Tainsky M.A. Bioinformatics. 19:2003;1348-1359.
19. Yang, I.V., Chen, E., Hasseman, J.P., Liang, W., Frank, B.C., Wang, S., Sharov, V., Saeed, A.I., White, J., Li, J., Lee, N.H., Yeatman, T.J. and Quackenbush, J. (2002) Genome Biol. 3, research0062.1-0062.12.
20. Richter A., Schwager C., Hentze S., Ansorge W., Hentze M.W., Muckenthaler M. BioTechniques. 33:2002;620-628.