-
1
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh,A.A., Eisen,M.B., Davis,R.E., Ma,C., Lossos,I.S., Rosenwald,A., Boldrick,J.C., Sabet,H., Tran,T., Yu,X. et al. (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature, 403, 503-511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
-
2
-
-
0033692876
-
Tissue classification with gene expression profiles
-
Ben-Dor,A., Bruhn,L., Friedman,N., Nachman,I., Schummer,M. and Yakhini,Z. (2000) Tissue classification with gene expression profiles. J. Comput. Biol., 7, 559-583.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 559-583
-
-
Ben-Dor, A.1
Bruhn, L.2
Friedman, N.3
Nachman, I.4
Schummer, M.5
Yakhini, Z.6
-
3
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
Bittner,M., Meltzer,P., Chen,Y., Jiang,Y., Seftor,E., Hendrix,M., Radmacher,M., Simon,R., Yakhini,Z., Ben-Dor,A. et al. (2000) Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature, 406, 536-540.
-
(2000)
Nature
, vol.406
, pp. 536-540
-
-
Bittner, M.1
Meltzer, P.2
Chen, Y.3
Jiang, Y.4
Seftor, E.5
Hendrix, M.6
Radmacher, M.7
Simon, R.8
Yakhini, Z.9
Ben-Dor, A.10
-
4
-
-
84984932472
-
Exploring the new world of the genome with DNA microarrays
-
Brown,P.O. and Botstein,D. (1999) Exploring the new world of the genome with DNA microarrays. Nature Genet., 21, 33-37.
-
(1999)
Nature Genet.
, vol.21
, pp. 33-37
-
-
Brown, P.O.1
Botstein, D.2
-
6
-
-
0003812858
-
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
-
Technical Report
-
Dudoit,S., Yang,Y.H., Callow,M.J. and Speed,T.P. (2000) Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Technical Report, http://stat-www.berkeley.edu/tech-reports/.
-
(2000)
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.J.3
Speed, T.P.4
-
7
-
-
84984934477
-
Expression profiling using cDNA microarrays
-
Duggan,D.J., Bittner,M., Chen,Y., Meltzer,P. and Trent,J.M. (1999) Expression profiling using cDNA microarrays. Nature Genet., 21, 10-14.
-
(1999)
Nature Genet.
, vol.21
, pp. 10-14
-
-
Duggan, D.J.1
Bittner, M.2
Chen, Y.3
Meltzer, P.4
Trent, J.M.5
-
8
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen,M.B., Spellman,P.T., Brown,P.O. and Botstein,D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA, 95, 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
9
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub,T.R., Slonim,D.K., Tamayo,P., Huard,C., Gaasenbeek,M., Mesirov,J.P., Coller,H., Loh,M.L., Downing,J.R. et al. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science, 286, 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
-
10
-
-
0035881617
-
Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns
-
Gruvberger,S., Ringnér,M., Chen,Y., Panavally,S., Saal,L.H., Borg,Å., Fernö,P.C. and Meltzer,P.S. (2001) Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns. Cancer Res., 61, 5979-5984.
-
(2001)
Cancer Res.
, vol.61
, pp. 5979-5984
-
-
Gruvberger, S.1
Ringnér, M.2
Chen, Y.3
Panavally, S.4
Saal, L.H.5
Borg, ̊A.6
Fernö, P.C.7
Meltzer, P.S.8
-
11
-
-
0034568109
-
'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns
-
research0003.1-0003.21
-
Hastie,T., Tibshirani,R., Eisen,M.B., Alizadeh,A., Levy,R., Staudt,L., Chan,W.C., Botstein,D. and Brown,P. (2000) 'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns. GenomeBiology.com, 1, research0003.1-0003.21.
-
(2000)
GenomeBiology.com
, vol.1
-
-
Hastie, T.1
Tibshirani, R.2
Eisen, M.B.3
Alizadeh, A.4
Levy, R.5
Staudt, L.6
Chan, W.C.7
Botstein, D.8
Brown, P.9
-
12
-
-
0035931947
-
Gene-expression profiles in hereditary breast cancer
-
Hedenfalk,I., Duggan,D., Chen,Y., Radmacher,M., Bittner,M., Simon,R., Meltzer,P., Gusterson,B., Esteller,M., Raffeld,M. et al. (2001) Gene-expression profiles in hereditary breast cancer. N. Engl. J. Med., 344, 539-548.
-
(2001)
N. Engl. J. Med.
, vol.344
, pp. 539-548
-
-
Hedenfalk, I.1
Duggan, D.2
Chen, Y.3
Radmacher, M.4
Bittner, M.5
Simon, R.6
Meltzer, P.7
Gusterson, B.8
Esteller, M.9
Raffeld, M.10
-
13
-
-
0000884487
-
Experimental design for gene expression microarrays
-
Kerr,M.K. and Churchill,G.A. (2001) Experimental design for gene expression microarrays. Biostatistics, 2, 183-201.
-
(2001)
Biostatistics
, vol.2
, pp. 183-201
-
-
Kerr, M.K.1
Churchill, G.A.2
-
14
-
-
0034730124
-
Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
-
Lee,M.L.T., Kuo,F.C., Whitmore,G.A. and Sklar,J. (2000) Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc. Natl Acad. Sci. USA, 97, 9834-9839.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9834-9839
-
-
Lee, M.L.T.1
Kuo, F.C.2
Whitmore, G.A.3
Sklar, J.4
-
15
-
-
85036858627
-
Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data
-
(in press)
-
McShane,L.M., Radmacher,M.D., Freidlin,B., Yu,R., Li,M. and Simon,R. (2001) Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data. Bioinformatics, (in press).
-
(2001)
Bioinformatics
-
-
McShane, L.M.1
Radmacher, M.D.2
Freidlin, B.3
Yu, R.4
Li, M.5
Simon, R.6
-
16
-
-
0035991757
-
A paradigm for class prediction using gene expression profiles
-
Radmacher,M.D., McShane,L.M. and Simon,R. (2001) A paradigm for class prediction using gene expression profiles. J. Comput. Biol., 9, 505-511.
-
(2001)
J. Comput. Biol.
, vol.9
, pp. 505-511
-
-
Radmacher, M.D.1
McShane, L.M.2
Simon, R.3
-
18
-
-
0035991731
-
Design of studies using DNA microarrays
-
Simon,R., Radmacher,M.D. and Dobbin,K. (2002) Design of studies using DNA microarrays. Genet. Epidemiol., 23, 21-36.
-
(2002)
Genet. Epidemiol.
, vol.23
, pp. 21-36
-
-
Simon, R.1
Radmacher, M.D.2
Dobbin, K.3
-
19
-
-
0034724394
-
Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae
-
Sudarsanam,P., Iyer,V.R., Brown,P.O. and Winston,F. (2000) Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA, 97, 3364-3369.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 3364-3369
-
-
Sudarsanam, P.1
Iyer, V.R.2
Brown, P.O.3
Winston, F.4
-
20
-
-
12944257429
-
Genome-wide expression profiling of mid-gestation placenta and embryo using a 15 000 mouse developmental cDNA microarray
-
Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R. et al. (2000) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15 000 mouse developmental cDNA microarray. Proc. Natl Acad. Sci. USA, 97, 9127-9132.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9127-9132
-
-
Tanaka, T.S.1
Jaradat, S.A.2
Lim, M.K.3
Kargul, G.J.4
Wang, X.5
Grahovac, M.J.6
Pantano, S.7
Sano, Y.8
Piao, Y.9
Nagaraja, R.10
-
21
-
-
0035875553
-
Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
-
Tseng,G.C., Oh,M.K., Rohlin,L., Liao,J.C. and Wong,W.H. (2001) Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res., 29, 2549-2557.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2549-2557
-
-
Tseng, G.C.1
Oh, M.K.2
Rohlin, L.3
Liao, J.C.4
Wong, W.H.5
-
22
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
Wolfinger,R.D., Gibson,G., Wolfinger,E.D., Bennett,L., Hamadeh,H., Bushel,P., Afshari,C. and Paules,R.S. (2001) Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol., 8, 625-637.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.S.8
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