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Volumn 2, Issue 5, 2005, Pages 337-343

Independence and reproducibility across microarry platforms

Author keywords

[No Author keywords available]

Indexed keywords

ANGIOTENSIN; COMPLEMENTARY DNA; COMPLEMENTARY RNA; OLIGONUCLEOTIDE; PLASMINOGEN ACTIVATOR INHIBITOR 1; ANGIOTENSIN II;

EID: 18244378238     PISSN: 15487091     EISSN: None     Source Type: Journal    
DOI: 10.1038/nmeth757     Document Type: Article
Times cited : (372)

References (20)
  • 1
    • 0036211063 scopus 로고    scopus 로고
    • Analysis of matched mRNA measurements from two different microarray technologies
    • Kuo, W.P., Jenssen, T.K., Butte, A.J., Ohno-Machado, L. & Kohane, I.S. Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics 18, 405-412 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 405-412
    • Kuo, W.P.1    Jenssen, T.K.2    Butte, A.J.3    Ohno-Machado, L.4    Kohane, I.S.5
  • 2
    • 9144256854 scopus 로고    scopus 로고
    • Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations
    • Shippy, R. et al. Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations. BMC Genomics 5, 61 (2004).
    • (2004) BMC Genomics , vol.5 , pp. 61
    • Shippy, R.1
  • 4
    • 4143151607 scopus 로고    scopus 로고
    • Current issues for DNA microarrays: Platform comparison, double linear amplification, and universal RNA reference
    • Park, P.J. et al. Current issues for DNA microarrays: platform comparison, double linear amplification, and universal RNA reference. J. Biotechnol. 112, 225-245 (2004).
    • (2004) J. Biotechnol. , vol.112 , pp. 225-245
    • Park, P.J.1
  • 5
    • 12144286757 scopus 로고    scopus 로고
    • A comparison of oligonucleotide and cDNA-based microarray systems
    • Mah, N. et al. A comparison of oligonucleotide and cDNA-based microarray systems. Physiol. Genomics 16, 361-370 (2004).
    • (2004) Physiol. Genomics , vol.16 , pp. 361-370
    • Mah, N.1
  • 6
    • 0346670079 scopus 로고    scopus 로고
    • Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell lines
    • Rogojina, A.T., Orr, W.E., Song, B.K. & Geisert, E.E., Jr. Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell lines. Mol. Vis. 9, 482-496 (2003).
    • (2003) Mol. Vis. , vol.9 , pp. 482-496
    • Rogojina, A.T.1    Orr, W.E.2    Song, B.K.3    Geisert Jr., E.E.4
  • 7
    • 0141742113 scopus 로고    scopus 로고
    • Multicomponent analysis of the pancreatic adenocarcinoma progression model using a pancreatic intraepithelial neoplasia tissue microarray
    • Maitra, A. et al. Multicomponent analysis of the pancreatic adenocarcinoma progression model using a pancreatic intraepithelial neoplasia tissue microarray. Mod. Pathol. 16, 902-912 (2003).
    • (2003) Mod. Pathol. , vol.16 , pp. 902-912
    • Maitra, A.1
  • 8
    • 1542361727 scopus 로고    scopus 로고
    • Overview of an interlaboratory collaboration on evaluating the effects of model hepatotoxicants on hepatic gene expression
    • Ulrich, R.G., Rockett, J.C., Gibson, G.G. & Pettit, S.D. Overview of an interlaboratory collaboration on evaluating the effects of model hepatotoxicants on hepatic gene expression. Environ. Health Perspect. 112, 423-427 (2004).
    • (2004) Environ. Health Perspect. , vol.112 , pp. 423-427
    • Ulrich, R.G.1    Rockett, J.C.2    Gibson, G.G.3    Pettit, S.D.4
  • 9
    • 2642561079 scopus 로고    scopus 로고
    • Are data from different gene expression microarray platforms comparable?
    • Jarvinen, A.-K. et al. Are data from different gene expression microarray platforms comparable? Genomics 83, 1164-1168 (2004).
    • (2004) Genomics , vol.83 , pp. 1164-1168
    • Jarvinen, A.-K.1
  • 10
    • 0141905890 scopus 로고    scopus 로고
    • Evaluation of gene expression measurements from commercial microarray platforms
    • Tan, P.K. et al. Evaluation of gene expression measurements from commercial microarray platforms. Nucleic Acids Res. 31, 5676-5684 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5676-5684
    • Tan, P.K.1
  • 11
    • 4844227298 scopus 로고    scopus 로고
    • Cardiac transcriptional response to acute and chronic angiotensin II treatments
    • Larkin, J.E. et al. Cardiac transcriptional response to acute and chronic angiotensin II treatments. Physiol. Genomics 18, 152-166 (2004).
    • (2004) Physiol. Genomics , vol.18 , pp. 152-166
    • Larkin, J.E.1
  • 12
    • 0030560897 scopus 로고    scopus 로고
    • Antisense RNA Amplification: A Linear Amplification Method for Analyzing the mRNA Population from Single Living Cells
    • Phillips, J. & Eberwine, J.H. Antisense RNA Amplification: A Linear Amplification Method for Analyzing the mRNA Population from Single Living Cells. Methods 10, 283-288 (1996).
    • (1996) Methods , vol.10 , pp. 283-288
    • Phillips, J.1    Eberwine, J.H.2
  • 13
    • 23644439004 scopus 로고    scopus 로고
    • A robust method for the amplification of RNA in the sense orientation
    • Marko, N.F., Frank, B., Quackenbush, J. & Lee, N.H. A robust method for the amplification of RNA in the sense orientation. BMC Genomics 6, 27 (2005).
    • (2005) BMC Genomics , vol.6 , pp. 27
    • Marko, N.F.1    Frank, B.2    Quackenbush, J.3    Lee, N.H.4
  • 14
    • 0033818954 scopus 로고    scopus 로고
    • A concise guide to cDNA microarray analysis
    • 552-544, 556
    • Hegde, P. et al. A concise guide to cDNA microarray analysis. Biotechniques 29, 548-550, 552-544, 556 (2000).
    • (2000) Biotechniques , vol.29 , pp. 548-550
    • Hegde, P.1
  • 15
    • 0037311919 scopus 로고    scopus 로고
    • TM4: A free, open-source system for microarray data management and analysis
    • Saeed, A.I. et al. TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34, 374-378 (2003).
    • (2003) Biotechniques , vol.34 , pp. 374-378
    • Saeed, A.I.1
  • 16
    • 84936916896 scopus 로고
    • Robust locally weighted regression and smoothing scatterplots
    • Cleveland, W.S. Robust locally weighted regression and smoothing scatterplots. J. Am. Stat. Assoc. 74, 829-836 (1979).
    • (1979) J. Am. Stat. Assoc. , vol.74 , pp. 829-836
    • Cleveland, W.S.1
  • 17
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • Li, C. & Wong, W.H. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc. Natl. Acad. Sci. USA 98, 31-36 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 18
    • 0035181665 scopus 로고    scopus 로고
    • Resourcerer: A database for annotating and linking microarray resources within and across species
    • software0002.0001-software0002.0004
    • Tsai, J. et al. Resourcerer: a database for annotating and linking microarray resources within and across species. Genome Biology 2, software0002.0001-0002.0004 (2001).
    • (2001) Genome Biology , vol.2
    • Tsai, J.1
  • 19
    • 4143151607 scopus 로고    scopus 로고
    • Current issues for DNA microarrays: Platform comparison, double linear amplification, and universal RNA reference
    • Park, P.J. et al. Current issues for DNA microarrays: platform comparison, double linear amplification, and universal RNA reference. J. Biotechnol. 112, 225-245 (2004).
    • (2004) J. Biotechnol. , vol.112 , pp. 225-245
    • Park, P.J.1
  • 20
    • 18244384210 scopus 로고    scopus 로고
    • Multiple lab comparison of microarray platforms
    • Irizarry, R.A. et al. Multiple lab comparison of microarray platforms. Nat. Methods 2, 345-349 (2004).
    • (2004) Nat. Methods , vol.2 , pp. 345-349
    • Irizarry, R.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.