메뉴 건너뛰기




Volumn 36, Issue 5, 2004, Pages 790-796

Microarray results improve significantly as hybridization approaches equilibrium

Author keywords

[No Author keywords available]

Indexed keywords

GENES; GENETIC ENGINEERING; NUCLEIC ACIDS; OPTIMIZATION; SIGNAL TO NOISE RATIO;

EID: 2442571046     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/04365st02     Document Type: Article
Times cited : (67)

References (17)
  • 3
    • 0037102247 scopus 로고    scopus 로고
    • Use of hybridization kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays
    • Dai, H., M. Meyer, S. Stepaniants, M. Ziman, and R. Stoughton. 2002. Use of hybridization kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays. Nucleic Acids Res. 30:e86.
    • (2002) Nucleic Acids Res. , vol.30
    • Dai, H.1    Meyer, M.2    Stepaniants, S.3    Ziman, M.4    Stoughton, R.5
  • 4
    • 0037215734 scopus 로고    scopus 로고
    • The importance of thermodynamic equilibrium for high throughput gene expression arrays
    • Bhanot, G., Z. Louzoun, J. Zhu, and C. DeLisi. 2003. The importance of thermodynamic equilibrium for high throughput gene expression arrays. Biophys. J. 84:124-135.
    • (2003) Biophys. J. , vol.84 , pp. 124-135
    • Bhanot, G.1    Louzoun, Z.2    Zhu, J.3    DeLisi, C.4
  • 5
    • 0642336937 scopus 로고    scopus 로고
    • Oligodeoxyribonucleotide probe accessibility on a three-dimensional DNA microarray surface and the effect of hybridization time on the accuracy of expression ratios
    • Dorris, D.R., A. Nguyen, L. Gieser, R. Lockner, A. Lublinsky, M. Patterson, E. Touma, T.J. Sendera, et al. 2003. Oligodeoxyribonucleotide probe accessibility on a three-dimensional DNA microarray surface and the effect of hybridization time on the accuracy of expression ratios. BMC Biotechnol. 3:6.
    • (2003) BMC Biotechnol. , vol.3 , pp. 6
    • Dorris, D.R.1    Nguyen, A.2    Gieser, L.3    Lockner, R.4    Lublinsky, A.5    Patterson, M.6    Touma, E.7    Sendera, T.J.8
  • 7
    • 0346059408 scopus 로고    scopus 로고
    • Expression of genes in the TGF-β signaling pathway is significantly deregulated in smooth muscle cells from aorta of aryl hydrocarbon receptor knockout mice
    • Guo, J., M. Sartor, S. Karyala, M. Medvedovic, S. Kann, A. Puga, P. Ryan, and C.R. Tomlinson. 2004. Expression of genes in the TGF-β signaling pathway is significantly deregulated in smooth muscle cells from aorta of aryl hydrocarbon receptor knockout mice. Toxicol. Appl. Pharmacol. 194:79-89.
    • (2004) Toxicol. Appl. Pharmacol. , vol.194 , pp. 79-89
    • Guo, J.1    Sartor, M.2    Karyala, S.3    Medvedovic, M.4    Kann, S.5    Puga, A.6    Ryan, P.7    Tomlinson, C.R.8
  • 8
    • 1942453913 scopus 로고    scopus 로고
    • Different global gene expression profiles in benzo[a]pyrene- and dioxin-treated vascular smooth muscle cells of AHR-knockout and wild-type mice
    • Karyala, S., J. Guo, M. Sartor, M. Medvedovic, S. Kann, A. Puga, P. Ryan, and C.R. Tomlinson. 2004. Different global gene expression profiles in benzo[a]pyrene- and dioxin-treated vascular smooth muscle cells of AHR-knockout and wild-type mice. Cardiovasc. Toxicol. 4:47-74.
    • (2004) Cardiovasc. Toxicol. , vol.4 , pp. 47-74
    • Karyala, S.1    Guo, J.2    Sartor, M.3    Medvedovic, M.4    Kann, S.5    Puga, A.6    Ryan, P.7    Tomlinson, C.R.8
  • 9
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    • Dudoit, S., Y.H. Yang, M.J. Callow, and T.P. Speed. 2002. Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica 12:111-139.
    • (2002) Statistica Sinica , vol.12 , pp. 111-139
    • Dudoit, S.1    Yang, Y.H.2    Callow, M.J.3    Speed, T.P.4
  • 11
    • 0037433040 scopus 로고    scopus 로고
    • Identifying differentially expressed genes using false discovery rate controlling procedures
    • Reiner, A., D. Yekutleli, and Y. Benjamini. 2003. Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics 19:368-375.
    • (2003) Bioinformatics , vol.19 , pp. 368-375
    • Reiner, A.1    Yekutleli, D.2    Benjamini, Y.3
  • 12
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. and Y. Hochherg. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Royal Stat. Soc. 57:289-300.
    • (1995) J. Royal Stat. Soc. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochherg, Y.2
  • 13
    • 2442548323 scopus 로고    scopus 로고
    • Cell surface receptor/ligand binding fundamentals
    • Oxford University Press, New York
    • Lauffenhurger, D.A. and JJ. Linderman. 1996. Cell surface receptor/ ligand binding fundamentals, p. 19-33. In Receptors. Oxford University Press, New York.
    • (1996) Receptors , pp. 19-33
    • Lauffenhurger, D.A.1    Linderman, J.J.2
  • 14
    • 0035875553 scopus 로고    scopus 로고
    • Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
    • Tseng, G.C., M. Oh, L. Rohlin, J. Liao, and W.H. Wong. 2001. Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res. 29:2549-2557.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2549-2557
    • Tseng, G.C.1    Oh, M.2    Rohlin, L.3    Liao, J.4    Wong, W.H.5
  • 16
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cDNA microarrays
    • Churchill, G.A. 2002. Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 32:490-495.
    • (2002) Nat. Genet. , vol.32 , pp. 490-495
    • Churchill, G.A.1
  • 17
    • 9444293382 scopus 로고    scopus 로고
    • Effects of mRNA amplification on gene expression ratios in cDNA experiments estimated by analysis of variance
    • Nygaard, V., A. Loland, M. Holden, M. Langaas, H. Rue, F. Liu, O. Myklebost, O. Fodstad, et al. 2003. Effects of mRNA amplification on gene expression ratios in cDNA experiments estimated by analysis of variance. BMC Genomics 4:11-23.
    • (2003) BMC Genomics , vol.4 , pp. 11-23
    • Nygaard, V.1    Loland, A.2    Holden, M.3    Langaas, M.4    Rue, H.5    Liu, F.6    Myklebost, O.7    Fodstad, O.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.