Local DNA stretching mimics the distortion caused by the TATA box-binding protein

Proceedings of the National Academy of Sciences of the United States of America

Volumn 94, Issue 7, 1997, Pages 2993-2998

  Lebrun, Anne ^a   Shakked, Zippora ^b   Lavery, Richard ^a  

^a INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

^b WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

Conformational transitions; Molecular modeling; Protein DNA interaction; Sequence specificity

Indexed keywords

DNA A; DNA B; DNA BINDING PROTEIN; DNA FRAGMENT;

ARTICLE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; CRYSTAL STRUCTURE; DNA CONFORMATION; DNA DENATURATION; DNA FLANKING REGION; DNA HELIX; DNA PROTEIN COMPLEX; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; TATA BOX;

DNA; DNA-BINDING PROTEINS; NUCLEIC ACID CONFORMATION; TATA BOX; TATA-BOX BINDING PROTEIN; TRANSCRIPTION FACTORS;

EID: 0030992537     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.94.7.2993     Document Type: Article

References (28)

1. Kim, Y., Gieger, J. H., Hahn, S. & Sigler, P. B. (1993) Nature (London) 365, 512-520.
2. Kim, J. L., Nikolov, D. B. & Burley, S. K. (1993) Nature (London) 365, 520-527.
3. Kim, J. L. & Burley, S. K. (1994) Nat. Struct. Biol. 1, 638-653.
4. Tan, S., Hunziker, Y., Sargent, D. F. & Richmond, T. J. (1996) Nature (London) 381, 127-134.
5. Geiger, J. H., Hahn, S., Lee, S. & Sigler, P. (1996) Science 272, 830-836.
6. Nikolov, D. B., Chen, H., Halay, E. D., Usheha, A. A., Hisatake, K., Lee, D. K., Roeder, R. G. & Burley, S. K. (1995) Nature (London) 377, 119-128.
7. Mirzabekov, A. D. & Rich, A. (1979) Biochemistry 76, 1118-1121.
8. Werner, M. H., Huth, J. R., Gronenborn, A. M. & Clore, G. M. (1995) Cell 81, 705-714.
9. Love, J. J., Li, X., Case, D. A., Glese, K., Grosschedi, R. & Wright, P. E. (1995) Nature (London) 248, 662-678.
10. Guzikevich-Guerstein, G. & Shakked, Z. (1996) Nat. Struct. Biol. 3, 32-37.
11. Pastor, N. & Weinstein, H. (1995) Protein Eng. 8, 543-549.
12. Miakiewicz, K. & Ornstein, R. L. (1996) J. Biomol. Struct. Dyn. 13, 593-600.
13. Werner, M. H., Gronenborn, A. M. & Clore, G. M. (1996) Science 271, 778-784.
14. Cluzel, P., Lebrun, A., Heller, C., Lavery, R., Viovy, J.-L., Chatenay, D. & Caron, F. (1995) Science 271, 792-794.
15. Lebrun, A. & Lavery, R. (1996) Nucleic Acids Res. 24, 2260-2270.
16. Lavery, R., Zakrzewska, K. & Sklenar, H. (1995) Comp. Phys. Commun. 91, 135-158.
17. Lavery, R. (1994) Adv. Comp. Biol. 1, 69-145.
18. Hingerty, B., Richie, R. H., Ferrel, T. L. & Turner, J. E. (1985) Biopolymers 24, 427-439.
19. Jayaram, B., Swaminathan, S., Beveridge, D. L., Sharp, K. & Honig, B. (1990) Macromolecules 23, 3156-3165.
20. Fritsch, V. & Westhof, E. (1991) J. Am. Chem. Soc. 113, 8271-8277.
21. Lavery, R. & Hartmann, B. (1994) Biophys. Chem. 50, 33-45.
22. Olson, W. K. (1977) Proc. Natl. Acad. Sci. USA 74, 1775-1779.
23. Shakked, Z., Rabinovich, D., Kennard, O., Cruse, W. B., Salisbury, S. A. & Viswamitra, M. A.(1983) J. Mol. Biol. 166, 183-201.
24. Bensimon, D., Simon, A., Croquette, V. & Bensimon, A. (1994) Science 265, 2096-2098.
25. Lavery, R. (1995) in Modelling of Biomolecular Structures and Mechanisms, eds. Pullman, A., Jortner, J. & Pullman, B. (Kluwer, Dordrecht, The Netherlands), pp. 217-230.
26. Lavery, R. & Sklenar, H. (1989) J. Biomol. Struct. Dyn. 6, 655-667.
27. Strauss, J. K. & Maher, L. J. (1994) Science 266, 1829-1834.
28. Elcock A. H. & McCammon, J. A. (1996) J. Am. Chem. Soc. 118, 3787-3788.