메뉴 건너뛰기




Volumn 277, Issue 2, 1998, Pages 333-345

Paromomycin binding induces a local conformational change in the A-site of 16 S rRNA

Author keywords

Aminoglycoside antibiotics; Decoding region; NMR; Ribosomal RNA; RNA ligand interaction

Indexed keywords

AMINOACYL TRANSFER RNA; AMINOGLYCOSIDE ANTIBIOTIC AGENT; OLIGONUCLEOTIDE; PAROMOMYCIN; RIBOSOME RNA;

EID: 0032571359     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.1551     Document Type: Article
Times cited : (275)

References (37)
  • 1
    • 0027403966 scopus 로고
    • Nuclear magnetic resonance study of a deoxyoligonucleotide duplex containing a three base bulge
    • Aboul-ela F., Murchie A.I.H., Homans S.W., Lilley D.M.J. Nuclear magnetic resonance study of a deoxyoligonucleotide duplex containing a three base bulge. J. Mol. Biol. 229:1993;173-188
    • (1993) J. Mol. Biol. , vol.229 , pp. 173-188
    • Aboul-Ela, F.1    Murchie, A.I.H.2    Homans, S.W.3    Lilley, D.M.J.4
  • 2
    • 0028864394 scopus 로고
    • The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein
    • Aboul-ela F., Karn J., Varani G. The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein. J. Mol. Biol. 253:1995;313-332
    • (1995) J. Mol. Biol. , vol.253 , pp. 313-332
    • Aboul-Ela, F.1    Karn, J.2    Varani, G.3
  • 3
    • 0029082529 scopus 로고
    • Structure of the P1 Helix from Group I Self-splicing Introns
    • Allain F.H.-T., Varani G. Structure of the P1 Helix from Group I Self-splicing Introns. J. Mol. Biol. 250:1995;333-353
    • (1995) J. Mol. Biol. , vol.250 , pp. 333-353
    • Allain, F.H.-T.1    Varani, G.2
  • 4
    • 0029920331 scopus 로고    scopus 로고
    • Specificity of ribonucleoprotein interaction determined by RNA folding during complex formation
    • Allain F.H., Gubser C.C., Howe P.W.A., Nagai K., Neuhaus D., Varani G. Specificity of ribonucleoprotein interaction determined by RNA folding during complex formation. Nature. 380:1996;646-650
    • (1996) Nature , vol.380 , pp. 646-650
    • Allain, F.H.1    Gubser, C.C.2    Howe, P.W.A.3    Nagai, K.4    Neuhaus, D.5    Varani, G.6
  • 6
    • 0025109109 scopus 로고
    • 13C resonances of Interleukin-1b using double and triple-resonance heteronuclear three-dimensional NMR spectroscopy
    • 13C resonances of Interleukin-1b using double and triple-resonance heteronuclear three-dimensional NMR spectroscopy. Biochemistry. 29:1990;8172-8184
    • (1990) Biochemistry , vol.29 , pp. 8172-8184
    • Clore, G.M.1    Bax, A.2    Driscoll, P.C.3    Wingfield, P.T.4    Gronenborn, A.M.5
  • 7
    • 0028206986 scopus 로고
    • Structure of a mispaired RNA double helix at 1.6-Å resolution and implication for the prediction of RNA secondary structure
    • Cruse W.B.T., Saludjian P., Biala E., Strazewski P., Prange T., Kennard O. Structure of a mispaired RNA double helix at 1.6-Å resolution and implication for the prediction of RNA secondary structure. Proc. Natl Acad. Sci. USA. 91:1994;4160-4164
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 4160-4164
    • Cruse, W.B.T.1    Saludjian, P.2    Biala, E.3    Strazewski, P.4    Prange, T.5    Kennard, O.6
  • 8
    • 0014429801 scopus 로고
    • Misreading of ribonucleic acid code words induced by aminoglycoside antibiotics
    • Davies J., Davis B.D. Misreading of ribonucleic acid code words induced by aminoglycoside antibiotics. J. Biol. Chem. 243:1968;3312-3316
    • (1968) J. Biol. Chem. , vol.243 , pp. 3312-3316
    • Davies, J.1    Davis, B.D.2
  • 9
    • 0002751916 scopus 로고
    • Misreading of RNA codewords induced by aminoglycoside antibiotics
    • Davies J., Gorini L., Davis B.D. Misreading of RNA codewords induced by aminoglycoside antibiotics. Mol. Pharmacol. 1:1965;93-106
    • (1965) Mol. Pharmacol. , vol.1 , pp. 93-106
    • Davies, J.1    Gorini, L.2    Davis, B.D.3
  • 10
    • 0029904020 scopus 로고    scopus 로고
    • Solution structure of an ATP-binding aptamer reveals a novel fold
    • Dieckmann T., Suzuki E., Nakamura G.K., Feigon J. Solution structure of an ATP-binding aptamer reveals a novel fold. RNA. 2:1996;628-640
    • (1996) RNA , vol.2 , pp. 628-640
    • Dieckmann, T.1    Suzuki, E.2    Nakamura, G.K.3    Feigon, J.4
  • 11
    • 0029825658 scopus 로고    scopus 로고
    • Structure of the A-site of E. coli 16 S rRNA complexed with an aminoglycoside antibiotic
    • Fourmy D., Recht M.I., Blanchard S.C., Puglisi J.D. Structure of the A-site of E. coli 16 S rRNA complexed with an aminoglycoside antibiotic. Science. 274:1996;1367-1371
    • (1996) Science , vol.274 , pp. 1367-1371
    • Fourmy, D.1    Recht, M.I.2    Blanchard, S.C.3    Puglisi, J.D.4
  • 12
    • 0032571306 scopus 로고    scopus 로고
    • Binding of neomycin-class aminoglycoside antibiotics to the A-site of 16 S rRNA
    • Fourmy D., Recht M.I., Puglisi J.D. Binding of neomycin-class aminoglycoside antibiotics to the A-site of 16 S rRNA. J. Mol. Biol. 277:1998;347-362
    • (1998) J. Mol. Biol. , vol.277 , pp. 347-362
    • Fourmy, D.1    Recht, M.I.2    Puglisi, J.D.3
  • 13
    • 0026000848 scopus 로고
    • Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs
    • Holbrook S.R., Cheong C., Tinoco I., Kim S.H. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs. Nature. 353:1991;579-581
    • (1991) Nature , vol.353 , pp. 579-581
    • Holbrook, S.R.1    Cheong, C.2    Tinoco, I.3    Kim, S.H.4
  • 14
    • 0029946537 scopus 로고    scopus 로고
    • Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex
    • Jiang F., Kumar R.A., Jones R.A., Patel D.J. Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex. Nature. 382:1996;183-186
    • (1996) Nature , vol.382 , pp. 183-186
    • Jiang, F.1    Kumar, R.A.2    Jones, R.A.3    Patel, D.J.4
  • 15
    • 0027988447 scopus 로고
    • Dissociation rate of cognate peptidyl-tRNA from the A-site of hyper-accurate and error-prone ribosomes
    • Karimi R., Ehrenberg M. Dissociation rate of cognate peptidyl-tRNA from the A-site of hyper-accurate and error-prone ribosomes. Eur. J. Biochem. 226:1994;355-360
    • (1994) Eur. J. Biochem. , vol.226 , pp. 355-360
    • Karimi, R.1    Ehrenberg, M.2
  • 16
    • 0006925492 scopus 로고
    • Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity
    • Kay L.E., Keifer P., Saarinen T. Pure absorption gradient enhanced heteronuclear single quantum correlation spectroscopy with improved sensitivity. J. Am. Chem. Soc. 114:1992;10663-10665
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 10663-10665
    • Kay, L.E.1    Keifer, P.2    Saarinen, T.3
  • 19
    • 0022916242 scopus 로고
    • Transfer RNA shields specific nucleotides in 16 S ribosomal RNA from attack by chemical probes
    • Moazed D., Noller H.F. Transfer RNA shields specific nucleotides in 16 S ribosomal RNA from attack by chemical probes. Cell. 47:1986;985-994
    • (1986) Cell , vol.47 , pp. 985-994
    • Moazed, D.1    Noller, H.F.2
  • 20
    • 0023238983 scopus 로고
    • Interaction of antibiotics with functional sites in 16 S ribosomal RNA
    • Moazed D., Noller H.F. Interaction of antibiotics with functional sites in 16 S ribosomal RNA. Nature. 327:1987;389-394
    • (1987) Nature , vol.327 , pp. 389-394
    • Moazed, D.1    Noller, H.F.2
  • 21
    • 0025070318 scopus 로고
    • Binding of tRNA to the ribosomal a and P sites protects two distinct sets of nucleotides in 16 S rRNA
    • Moazed D., Noller H.F. Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA. J. Mol. Biol. 211:1990;135-145
    • (1990) J. Mol. Biol. , vol.211 , pp. 135-145
    • Moazed, D.1    Noller, H.F.2
  • 22
    • 0028860964 scopus 로고
    • Improved RNA structure determination by detection of NOE contacts to exchange-broadened amino protons
    • Mueller L., Legault P., Pardi A. Improved RNA structure determination by detection of NOE contacts to exchange-broadened amino protons. J. Am. Chem. Soc. 117:1995;11043-11048
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 11043-11048
    • Mueller, L.1    Legault, P.2    Pardi, A.3
  • 23
    • 0025733603 scopus 로고
    • Ribosomal RNA and translation
    • Noller H.F. Ribosomal RNA and translation. Annu. Rev. Biochem. 60:1991;191-227
    • (1991) Annu. Rev. Biochem. , vol.60 , pp. 191-227
    • Noller, H.F.1
  • 24
    • 0028090796 scopus 로고
    • Selective perturbation of G530 of 16 S rRNA by translational miscoding agents and a streptomycin-dependence mutation in protein S12
    • Powers T., Noller H.F. Selective perturbation of G530 of 16 S rRNA by translational miscoding agents and a streptomycin-dependence mutation in protein S12. J. Mol. Biol. 235:1994;156-172
    • (1994) J. Mol. Biol. , vol.235 , pp. 156-172
    • Powers, T.1    Noller, H.F.2
  • 25
    • 0028820398 scopus 로고
    • Biochemical and NMR studies of RNA conformation with an emphasis on RNA pseudoknots
    • Puglisi J.D., Wyatt J.R. Biochemical and NMR studies of RNA conformation with an emphasis on RNA pseudoknots. Methods Enzymol. 261:1995;323-350
    • (1995) Methods Enzymol. , vol.261 , pp. 323-350
    • Puglisi, J.D.1    Wyatt, J.R.2
  • 27
    • 0028858599 scopus 로고
    • Solution structure of a bovine immunodeficiency virus Tat-TAR peptide RNA complex
    • Puglisi J.D., Chen L., Blanchard S., Frankel A.D. Solution structure of a bovine immunodeficiency virus Tat-TAR peptide RNA complex. Science. 270:1995;1200-1203
    • (1995) Science , vol.270 , pp. 1200-1203
    • Puglisi, J.D.1    Chen, L.2    Blanchard, S.3    Frankel, A.D.4
  • 28
    • 1842388479 scopus 로고    scopus 로고
    • RNA sequence determinants for aminoglycoside binding to an a site rRNA model oligonucleotide
    • Recht M.I., Fourmy D., Blanchard S.C., Dahlquist K.D., Puglisi J.D. RNA sequence determinants for aminoglycoside binding to an A site rRNA model oligonucleotide. J. Mol. Biol. 262:1996;421-436
    • (1996) J. Mol. Biol. , vol.262 , pp. 421-436
    • Recht, M.I.1    Fourmy, D.2    Blanchard, S.C.3    Dahlquist, K.D.4    Puglisi, J.D.5
  • 29
    • 0026634020 scopus 로고
    • Solution structure of a trinucleotide A-T-A bulge loop within a DNA duplex
    • Rosen M.A., Lawrence S., Patel D. Solution structure of a trinucleotide A-T-A bulge loop within a DNA duplex. Biochemistry. 31:1992;4015-4026
    • (1992) Biochemistry , vol.31 , pp. 4015-4026
    • Rosen, M.A.1    Lawrence, S.2    Patel, D.3
  • 30
    • 0025744320 scopus 로고
    • Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase
    • Rould M.A., Perona J.J., Steitz T.A. Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase. Nature. 352:1991;213-218
    • (1991) Nature , vol.352 , pp. 213-218
    • Rould, M.A.1    Perona, J.J.2    Steitz, T.A.3
  • 31
    • 44049118414 scopus 로고
    • A constant-time 2D overbodenhausen experiment for inverse correlation of isotopically enriched species
    • Santoro J., King G. A constant-time 2D overbodenhausen experiment for inverse correlation of isotopically enriched species. J. Magn. Reson. 97:1992;202-207
    • (1992) J. Magn. Reson. , vol.97 , pp. 202-207
    • Santoro, J.1    King, G.2
  • 32
    • 0029437489 scopus 로고
    • Triple resonance HNCCCH experiments for correlating exchangeable cytidine and uridine base protons in RNA
    • Simorre J., Zimmermann G.R., Pardi A., Farmer B.T.I., Mueller L. Triple resonance HNCCCH experiments for correlating exchangeable cytidine and uridine base protons in RNA. J. Biomol. NMR. 6:1995;427-432
    • (1995) J. Biomol. NMR , vol.6 , pp. 427-432
    • Simorre, J.1    Zimmermann, G.R.2    Pardi, A.3    Farmer, B.T.I.4    Mueller, L.5
  • 34
    • 0023046345 scopus 로고
    • 1H resonances in oligonucleotides by two-dimensional NMR spectroscopy
    • 1H resonances in oligonucleotides by two-dimensional NMR spectroscopy. FEBS Letters. 208:1986;94-98
    • (1986) FEBS Letters , vol.208 , pp. 94-98
    • Skléenar, V.1    Miyashiro, H.2    Zon, G.3    Bax, A.4
  • 35
    • 12044251259 scopus 로고
    • Solvent suppression with symmetrically-shifted pulses
    • Smallcombe S.H. Solvent suppression with symmetrically-shifted pulses. J. Am. Chem. Soc. 115:1993;4776-4785
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 4776-4785
    • Smallcombe, S.H.1
  • 37
    • 0025799785 scopus 로고
    • Interaction of antibiotics with a and P-site-specific bases in 16 S ribosomal RNA
    • Woodcock J., Moazed D., Cannon M., Davies J., Noller H.F. Interaction of antibiotics with A and P-site-specific bases in 16 S ribosomal RNA. EMBO J. 10:1991;3099-3103
    • (1991) EMBO J. , vol.10 , pp. 3099-3103
    • Woodcock, J.1    Moazed, D.2    Cannon, M.3    Davies, J.4    Noller, H.F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.