Symmetric K+ and Mg2+ Ion-binding Sites in the 5 S rRNA Loop e Inferred from Molecular Dynamics Simulations

Journal of Molecular Biology

Volumn 335, Issue 2, 2004, Pages 555-571

  Auffinger, Pascal ^a   Bielecki, Lukasz ^a,b   Westhof, Eric ^a  

^a INST DE BIOL MOLEC ET CELLULAIRE   (France)

^b Institute of Bioorganic Chemistry Polish Academy   (Poland)

Author keywords

Brownian dynamics simulations; Ion competition; X ray crystallography

Indexed keywords

DIVALENT CATION; DOUBLE STRANDED RNA; GUANINE 7 OXIDE; ION; MAGNESIUM ION; MONOVALENT CATION; POTASSIUM CHLORIDE; POTASSIUM ION; RIBOSOME PROTEIN; RNA 5S; BACTERIAL RNA; GUANINE; MAGNESIUM; POTASSIUM; WATER;

ARTICLE; ATOM; BINDING SITE; CONCENTRATION (PARAMETERS); METAL BINDING; MOLECULAR DYNAMICS; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN MOTIF; RNA ANALYSIS; RNA BINDING; RNA STABILITY; RNA STRUCTURE; SIMULATION; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; CONFORMATION; GENETICS; HYDROGEN BOND; METABOLISM; PROTEIN BINDING;

BINDING SITES; COMPUTER SIMULATION; GUANINE; HYDROGEN BONDING; MAGNESIUM; MODELS, MOLECULAR; MOLECULAR CONFORMATION; NUCLEIC ACID CONFORMATION; POTASSIUM; PROTEIN BINDING; RIBOSOMAL PROTEINS; RNA, BACTERIAL; RNA, RIBOSOMAL, 5S; WATER;

EID: 0346366808     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2003.10.057     Document Type: Article

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